Rh6DG147900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
21471246 .. 21473285
2040 bp
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UTR
Exon/CDS
Intron
Rh6DG147900.1

Sequence Viewer

Length: 204 bp
ATGGGGAATTTGGTGTCCGAAATTGGTCAAGGAGAATTGAAGCATTTACCAGGACAATGTGGGAGGATTCATCAGGAAAGTGAGGCGCTTTCTGGTGCTGTCGTGATAAGTGAATATGAGTTGCATGCCGATATGTACCTCCCAAGTATGATTACTGAAAACAAAAATCTCGGCACAATTAATTTCACCGTAGATTTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.32

Weight (kDa)

4.66

Isoelectric Point (pI)

32.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019063)

Species Orthologous Gene IDs
rosa_laevigata RLG00000013937
rosa_multiflora Rmu_sc0001839.1_g000030
rosa_roxburghii Rroxscaffold_7G00200100
rosa_rugosa Rorug06G0038900
rosa_samantha Rh6AG158300 Rh6BG162300 Rh6CG156100 Rh6DG147900
rosa_wichuraiana Rw6G013770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 7
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 1 cut(s) 49
ApoI RAATTY 1 cut(s) 7
AseI ATTAAT 1 cut(s) 180
AspLEI GCGC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 51
Bst2UI CCWGG 1 cut(s) 51
Bst4CI ACNGT 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstNI CCWGG 1 cut(s) 51
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 126
CfoI GCGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 136
CviAII CATG 1 cut(s) 125
CviQI GTAC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 128
FaiI YATR 4 cut(s) 117, 126, 134, 149
FatI CATG 1 cut(s) 124
GlaI GCGC 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 89
HhaI GCGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 128
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HinfI GANTC 1 cut(s) 67
HphI GGTGA 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 2 cut(s) 74, 103
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 124
Hsp92II CATG 1 cut(s) 128
HspAI GCGC 1 cut(s) 86
LpnPI CCDG 4 cut(s) 36, 59, 63, 78
MluCI AATT 5 cut(s) 7, 21, 35, 177, 181
MnlI CCTC 3 cut(s) 57, 76, 149
MseI TTAA 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 51
MvaI CCWGG 1 cut(s) 51
NlaIII CATG 1 cut(s) 128
NmeAIII GCCGAG 1 cut(s) 150
NspI RCATGY 1 cut(s) 128
PaeI GCATGC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 67
PshBI ATTAAT 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 49
PspGI CCWGG 1 cut(s) 49
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 51
SetI ASST 1 cut(s) 141
SgeI CNNG 9 cut(s) 41, 62, 63, 86, 105, 115, 137, 156, 182
SphI GCATGC 1 cut(s) 128
Sse9I AATT 5 cut(s) 7, 21, 35, 177, 181
StyD4I CCNGG 1 cut(s) 49
TaaI ACNGT 1 cut(s) 190
TasI AATT 5 cut(s) 7, 21, 35, 177, 181
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TspDTI ATGAA 1 cut(s) 59
VspI ATTAAT 1 cut(s) 180
XapI RAATTY 1 cut(s) 7
XceI RCATGY 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.