Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0019472

Physical Location & Seq

Genomic Coordinates Reverse (-)

46901446 .. 46902683

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014089

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAAGGAATTATCGTTATGATTTTCAATTACTGTGATTGGAATGATGTCGTGTCGAATCCCAGTGAGTACCAGAGGCTGGCACAATCCGTGGCGGAGCTCGATGAGGCTGAAAGAGGAGGATACAAGACCTATGTGATGGAGATCAAAGGAAAGCGCGTATACAGCAAATTAAAATATGAATCTGGTGTTCACCGGGTTCAACGTGTTCCTCATACGGAAACAATGAGTACGGATTCTGCGCCAGTCAGTTGTCCAACAATGTCTGCAGGACCAAAGTATGAGTACGGATGTGTTGATGGAGTTAACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006996 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0061024 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

105

Amino Acids

11.71

Weight (kDa)

5.31

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	24 - 76	1.8e-16	PCRF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019472)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014089
rosa_multiflora	Rmu_sc0001556.1_g000022 Rmu_sc0015522.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074430 Rroxscaffold_4G00322990
rosa_samantha	Rh4AG408300 Rh4DG027300 Rh7CG279400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	159
AciI	CCGC	1 cut(s)	95
AfaI	GTAC	3 cut(s)	71, 232, 287
AfiI	CCNNNNNNNGG	1 cut(s)	79
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	2 cut(s)	28, 203
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
Alw21I	GWGCWC	1 cut(s)	102
AlwNI	CAGNNNCTG	1 cut(s)	79
AspLEI	GCGC	2 cut(s)	159, 244
AspS9I	GGNCC	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BccI	CCATC	2 cut(s)	133, 293
BciVI	GTATCC	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmrFI	CCNGG	1 cut(s)	197
BmrI	ACTGGG	1 cut(s)	57
BmuI	ACTGGG	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	63, 245
Bse8I	GATNNNNATC	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	296
BseJI	GATNNNNATC	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseNI	ACTGG	2 cut(s)	63, 245
BseRI	GAGGAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	159
BspMAI	CTGCAG	1 cut(s)	271
BsrI	ACTGG	2 cut(s)	63, 245
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	144
BssNAI	GTATAC	1 cut(s)	163
Bst1107I	GTATAC	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	2 cut(s)	159, 244
BstKTI	GATC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	144
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	159
BstZ17I	GTATAC	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	296
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	81
CaiI	CAGNNNCTG	1 cut(s)	79
CfoI	GCGC	2 cut(s)	159, 244
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	3 cut(s)	70, 231, 286
CviJI	RGCY	3 cut(s)	79, 100, 110
CviKI_1	RGCY	3 cut(s)	79, 100, 110
CviQI	GTAC	3 cut(s)	70, 231, 286
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
EciI	GGCGGA	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	100
EcoICRI	GAGCTC	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	102
FaiI	YATR	6 cut(s)	20, 135, 163, 180, 216, 282
FblI	GTMKAC	1 cut(s)	162
FokI	GGATG	1 cut(s)	303
FriOI	GRGCYC	1 cut(s)	102
GlaI	GCGC	2 cut(s)	158, 243
HapII	CCGG	1 cut(s)	196
HhaI	GCGC	2 cut(s)	159, 244
Hin6I	GCGC	2 cut(s)	157, 242
HinP1I	GCGC	2 cut(s)	157, 242
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	3 cut(s)	58, 182, 236
HpaI	GTTAAC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	3 cut(s)	163, 193, 307
Hpy8I	GTNNAC	3 cut(s)	163, 193, 307
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	205
HspAI	GCGC	2 cut(s)	157, 242
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	7 cut(s)	65, 76, 86, 171, 209, 255, 258
MaeII	ACGT	1 cut(s)	205
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	3 cut(s)	9, 28, 170
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	5 cut(s)	69, 100, 110, 113, 222
MseI	TTAA	3 cut(s)	173, 306, 313
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	165
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	58, 182, 236
PflMI	CCANNNNNTGG	1 cut(s)	79
Psp124BI	GAGCTC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	79
RsaI	GTAC	3 cut(s)	71, 232, 287
RsaNI	GTAC	3 cut(s)	70, 231, 286
SacI	GAGCTC	1 cut(s)	102
SaqAI	TTAA	3 cut(s)	173, 306, 313
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	3 cut(s)	102, 134, 208
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	272
Sse9I	AATT	3 cut(s)	9, 28, 170
SsiI	CCGC	1 cut(s)	95
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	2 cut(s)	56, 102
TasI	AATT	3 cut(s)	9, 28, 170
TfiI	GAWTC	3 cut(s)	58, 182, 236
Tru1I	TTAA	3 cut(s)	173, 306, 313
Tru9I	TTAA	3 cut(s)	173, 306, 313
TscAI	CASTG	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	195
TspGWI	ACGGA	4 cut(s)	79, 233, 248, 303
TspRI	CASTG	1 cut(s)	70
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.