Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015522.1

Orthogroup ID

OG0019472

Physical Location & Seq

Genomic Coordinates Forward (+)

420 .. 3560

Gene Structure 3141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015522.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atgaatggttgcaggaacagagccatcagtggatgtgggattaagattcctattatgaagacattaggggatataggagcccctacggtgttcgacgaccgagcagtggctggtgctctcctccgggtcagcaccgcagcgttacagtgcccttctcctccgccgttcgcggagcagaggatcgtgcctctcccggagaaggttaagaagagccgccgcgcttttcttccccacggcggcaatgagtggcctcaccaccacgtcagcaccgctgcgattactcgcaatcccagcacgacaccgtttcaccgacaattcatggacttccatcgccatccccaaacctcatctcggagctccacgaatcatttgcatggcggtcagtccattaagcaattcgcgccgtatttgattacgaagctggaatctgcagagaagacatggaaggaattatcggtcaagctggctgatccagatgtcgagttgaatcccagtgagtcccagaggctggcacaatcggtggtggagctcaatgaggttgtgtcaatctgtaaggaatatgaggactgtgagaagcagttagaagagagtaaaggtattttcttgctaaagtccttgtttataaccaatgtatcagctttagcggatgaagatggcaatgatgaagaaatggcagcaatgatatcatatgaaattgagtctttgtccaatcaaatgaaagaacttgaggagaagcttaaggaccaaagtatgagtacggatgtgttgatggagttaacattcaagaaaccaatagaggctttgatggagatcaaaggaaagcgcgtatacagcaaattaaaatatgaatctggtgttcaccgggttcaacgtgttcctcatacggaaacaatgagtacggattctgcgccagtcagttgtccaacaatgtctgcaggaccaaagtatgagtacggatgtgttgatggagttaacattcaagaaaccaatagaggcttctgctccaaaatttgtggaatatttaatggactggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006996 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0061024 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

345

Amino Acids

38.37

Weight (kDa)

6.28

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019472)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014089
rosa_multiflora	Rmu_sc0001556.1_g000022 Rmu_sc0015522.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074430 Rroxscaffold_4G00322990
rosa_samantha	Rh4AG408300 Rh4DG027300 Rh7CG279400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AccB7I	CCANNNNNTGG	1 cut(s)	508
AccI	GTMKAC	1 cut(s)	828
AccII	CGCG	4 cut(s)	170, 219, 401, 825
AciI	CCGC	9 cut(s)	135, 161, 170, 214, 217, 237, 270, 378, 644
AclWI	GGATC	2 cut(s)	188, 464
AcsI	RAATTY	1 cut(s)	1008
AfaI	GTAC	3 cut(s)	757, 898, 953
AfiI	CCNNNNNNNGG	5 cut(s)	106, 199, 236, 351, 508
AflII	CTTAAG	1 cut(s)	737
AflIII	ACRYGT	1 cut(s)	871
AgsI	TTSAA	4 cut(s)	487, 784, 869, 980
AjiI	CACGTC	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	980, 1012
AluBI	AGCT	6 cut(s)	357, 421, 463, 529, 638, 736
AluI	AGCT	6 cut(s)	357, 421, 463, 529, 638, 736
Alw21I	GWGCWC	3 cut(s)	118, 359, 531
AlwI	GGATC	2 cut(s)	188, 464
AlwNI	CAGNNNCTG	2 cut(s)	110, 508
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	3 cut(s)	137, 272, 674
ApoI	RAATTY	1 cut(s)	1008
AspLEI	GCGC	4 cut(s)	221, 403, 825, 910
AspS9I	GGNCC	2 cut(s)	742, 938
AsuC2I	CCSGG	3 cut(s)	125, 194, 863
AsuHPI	GGTGA	3 cut(s)	245, 299, 851
AvaII	GGWCC	2 cut(s)	742, 938
BaeGI	GKGCMC	1 cut(s)	152
BaeI	ACNNNNGTAYC	2 cut(s)	615, 648
BanII	GRGCYC	3 cut(s)	82, 359, 531
BbsI	GAAGAC	2 cut(s)	65, 443
Bbv12I	GWGCWC	3 cut(s)	118, 359, 531
BbvI	GCAGC	3 cut(s)	149, 259, 686
BccI	CCATC	7 cut(s)	32, 336, 342, 647, 763, 799, 959
BceAI	ACGGC	3 cut(s)	148, 250, 388
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BcnI	CCSGG	3 cut(s)	125, 194, 863
BfmI	CTRYAG	2 cut(s)	429, 933
BfrI	CTTAAG	1 cut(s)	737
BisI	GCNGC	6 cut(s)	138, 214, 217, 238, 273, 675
BlsI	GCNGC	6 cut(s)	139, 215, 218, 239, 274, 676
Bme1390I	CCNGG	3 cut(s)	125, 194, 863
Bme18I	GGWCC	2 cut(s)	742, 938
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	742, 938
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	3 cut(s)	125, 194, 863
BmrI	ACTGGG	1 cut(s)	486
BmuI	ACTGGG	1 cut(s)	486
BpiI	GAAGAC	2 cut(s)	65, 443
BpuEI	CTTGAG	1 cut(s)	746
BpuMI	CCSGG	3 cut(s)	125, 194, 863
BsaBI	GATNNNNATC	1 cut(s)	809
BsaJI	CCNNGG	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	5 cut(s)	106, 199, 236, 351, 508
Bse1I	ACTGG	3 cut(s)	492, 911, 1035
Bse3DI	GCAATG	3 cut(s)	247, 664, 684
Bse8I	GATNNNNATC	1 cut(s)	809
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	5 cut(s)	38, 334, 652, 766, 962
BseJI	GATNNNNATC	1 cut(s)	809
BseLI	CCNNNNNNNGG	5 cut(s)	106, 199, 236, 351, 508
BseMI	GCAATG	3 cut(s)	247, 664, 684
BseNI	ACTGG	3 cut(s)	492, 911, 1035
BseRI	GAGGAG	3 cut(s)	110, 147, 743
BseSI	GKGCMC	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	149, 259, 686
BseYI	CCCAGC	1 cut(s)	290
Bsh1236I	CGCG	4 cut(s)	170, 219, 401, 825
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	250
BsiEI	CGRYCG	1 cut(s)	100
BsiHKAI	GWGCWC	3 cut(s)	118, 359, 531
BsiSI	CCGG	3 cut(s)	124, 194, 862
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	5 cut(s)	106, 199, 236, 351, 508
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	1 cut(s)	250
Bsp1286I	GDGCHC	5 cut(s)	82, 118, 152, 359, 531
Bsp143I	GATC	3 cut(s)	180, 469, 810
BspACI	CCGC	9 cut(s)	135, 161, 170, 214, 217, 237, 270, 378, 644
BspANI	GGCC	1 cut(s)	250
BspFNI	CGCG	4 cut(s)	170, 219, 401, 825
BspLI	GGNNCC	1 cut(s)	79
BspMAI	CTGCAG	2 cut(s)	433, 937
BspPI	GGATC	2 cut(s)	188, 464
BspQI	GCTCTTC	1 cut(s)	203
BspTI	CTTAAG	1 cut(s)	737
BsrDI	GCAATG	3 cut(s)	247, 664, 684
BsrI	ACTGG	3 cut(s)	492, 911, 1035
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	3 cut(s)	180, 469, 810
BssNAI	GTATAC	1 cut(s)	829
Bst1107I	GTATAC	1 cut(s)	829
Bst4CI	ACNGT	4 cut(s)	88, 147, 303, 569
Bst6I	CTCTTC	2 cut(s)	203, 579
BstAFI	CTTAAG	1 cut(s)	737
BstC8I	GCNNGC	2 cut(s)	465, 510
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	5 cut(s)	38, 334, 652, 766, 962
BstFNI	CGCG	4 cut(s)	170, 219, 401, 825
BstHHI	GCGC	4 cut(s)	221, 403, 825, 910
BstKTI	GATC	3 cut(s)	183, 472, 813
BstMBI	GATC	3 cut(s)	180, 469, 810
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 400, 831
BstSCI	CCNGG	3 cut(s)	123, 192, 861
BstSFI	CTRYAG	2 cut(s)	429, 933
BstSLI	GKGCMC	1 cut(s)	152
BstUI	CGCG	4 cut(s)	170, 219, 401, 825
BstV1I	GCAGC	3 cut(s)	149, 259, 686
BstV2I	GAAGAC	2 cut(s)	65, 443
BstZ17I	GTATAC	1 cut(s)	829
BsuRI	GGCC	1 cut(s)	250
BtgI	CCRYGG	1 cut(s)	232
BtgZI	GCGATG	1 cut(s)	314
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	5 cut(s)	38, 334, 652, 766, 962
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	4 cut(s)	34, 111, 152, 499
Cac8I	GCNNGC	2 cut(s)	465, 510
CaiI	CAGNNNCTG	2 cut(s)	110, 508
CfoI	GCGC	4 cut(s)	221, 403, 825, 910
Cfr13I	GGNCC	2 cut(s)	742, 938
Csp6I	GTAC	3 cut(s)	756, 897, 952
CspCI	CAANNNNNGTGG	2 cut(s)	994, 1029
CviAII	CATG	3 cut(s)	319, 374, 441
CviQI	GTAC	3 cut(s)	756, 897, 952
DpnI	GATC	3 cut(s)	182, 471, 812
DpnII	GATC	3 cut(s)	180, 469, 810
Eam1104I	CTCTTC	2 cut(s)	203, 579
EarI	CTCTTC	2 cut(s)	203, 579
EciI	GGCGGA	1 cut(s)	150
Ecl136II	GAGCTC	2 cut(s)	357, 529
Eco24I	GRGCYC	3 cut(s)	82, 359, 531
Eco32I	GATATC	1 cut(s)	684
Eco47I	GGWCC	2 cut(s)	742, 938
Eco53kI	GAGCTC	2 cut(s)	357, 529
EcoICRI	GAGCTC	2 cut(s)	357, 529
EcoRV	GATATC	1 cut(s)	684
EcoT38I	GRGCYC	3 cut(s)	82, 359, 531
FaeI	CATG	3 cut(s)	322, 377, 444
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	3 cut(s)	318, 373, 440
FauNDI	CATATG	1 cut(s)	688
FblI	GTMKAC	1 cut(s)	828
Fnu4HI	GCNGC	6 cut(s)	138, 214, 217, 238, 273, 675
FokI	GGATG	5 cut(s)	45, 321, 659, 773, 969
FriOI	GRGCYC	3 cut(s)	82, 359, 531
Fsp4HI	GCNGC	6 cut(s)	138, 214, 217, 238, 273, 675
GlaI	GCGC	4 cut(s)	220, 402, 824, 909
GluI	GCNGC	6 cut(s)	138, 214, 217, 238, 273, 675
GsaI	CCCAGC	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	3 cut(s)	124, 194, 862
HhaI	GCGC	4 cut(s)	221, 403, 825, 910
Hin1II	CATG	3 cut(s)	322, 377, 444
Hin6I	GCGC	4 cut(s)	219, 401, 823, 908
HinP1I	GCGC	4 cut(s)	219, 401, 823, 908
HincII	GTYRAC	2 cut(s)	777, 973
HindII	GTYRAC	2 cut(s)	777, 973
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	8 cut(s)	46, 364, 425, 487, 497, 698, 848, 902
HpaI	GTTAAC	2 cut(s)	777, 973
HpaII	CCGG	3 cut(s)	124, 194, 862
HphI	GGTGA	3 cut(s)	245, 299, 851
Hpy166II	GTNNAC	4 cut(s)	777, 829, 859, 973
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	3 cut(s)	473, 784, 980
Hpy8I	GTNNAC	4 cut(s)	777, 829, 859, 973
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	162, 193, 439
HpyCH4III	ACNGT	4 cut(s)	88, 147, 303, 569
HpyCH4IV	ACGT	2 cut(s)	261, 871
HpyCH4V	TGCA	4 cut(s)	12, 373, 431, 935
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 400, 831
HpySE526I	ACGT	2 cut(s)	261, 871
Hsp92II	CATG	3 cut(s)	322, 377, 444
HspAI	GCGC	4 cut(s)	219, 401, 823, 908
KspAI	GTTAAC	2 cut(s)	777, 973
Kzo9I	GATC	3 cut(s)	180, 469, 810
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	6 cut(s)	77, 172, 354, 362, 526, 1007
Lsp1109I	GCAGC	3 cut(s)	149, 259, 686
MaeII	ACGT	2 cut(s)	261, 871
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	3 cut(s)	182, 471, 812
MboI	GATC	3 cut(s)	180, 469, 810
MboII	GAAGA	7 cut(s)	70, 218, 220, 448, 596, 662, 677
MhlI	GDGCHC	5 cut(s)	82, 118, 152, 359, 531
MluCI	AATT	6 cut(s)	314, 395, 449, 693, 836, 1008
MlyI	GAGTC	2 cut(s)	506, 707
MmeI	TCCRAC	1 cut(s)	947
MseI	TTAA	8 cut(s)	42, 204, 390, 738, 776, 839, 972, 1023
MslI	CAYNNNNRTG	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	272
MspCI	CTTAAG	1 cut(s)	737
MspI	CCGG	3 cut(s)	124, 194, 862
MspR9I	CCNGG	3 cut(s)	125, 194, 863
MvnI	CGCG	4 cut(s)	170, 219, 401, 825
MwoI	GCNNNNNNNGC	3 cut(s)	291, 400, 831
NciI	CCSGG	3 cut(s)	125, 194, 863
NdeI	CATATG	1 cut(s)	688
NdeII	GATC	3 cut(s)	180, 469, 810
NlaIII	CATG	3 cut(s)	322, 377, 444
NlaIV	GGNNCC	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	203
PfeI	GAWTC	6 cut(s)	46, 364, 425, 487, 848, 902
PflMI	CCANNNNNTGG	1 cut(s)	508
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	6 cut(s)	139, 215, 218, 239, 274, 676
PleI	GAGTC	2 cut(s)	505, 706
PpsI	GAGTC	2 cut(s)	505, 706
PsiI	TTATAA	1 cut(s)	623
Psp124BI	GAGCTC	2 cut(s)	359, 531
PspFI	CCCAGC	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	2 cut(s)	742, 938
PstI	CTGCAG	2 cut(s)	433, 937
PstNI	CAGNNNCTG	2 cut(s)	110, 508
RsaI	GTAC	3 cut(s)	757, 898, 953
RsaNI	GTAC	3 cut(s)	756, 897, 952
RseI	CAYNNNNRTG	1 cut(s)	372
SacI	GAGCTC	2 cut(s)	359, 531
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	8 cut(s)	42, 204, 390, 738, 776, 839, 972, 1023
SatI	GCNGC	6 cut(s)	138, 214, 217, 238, 273, 675
Sau3AI	GATC	3 cut(s)	180, 469, 810
Sau96I	GGNCC	2 cut(s)	742, 938
SchI	GAGTC	2 cut(s)	506, 707
ScrFI	CCNGG	3 cut(s)	125, 194, 863
SduI	GDGCHC	5 cut(s)	82, 118, 152, 359, 531
SfcI	CTRYAG	2 cut(s)	429, 933
SinI	GGWCC	2 cut(s)	742, 938
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	2 cut(s)	725, 737
SmoI	CTYRAG	2 cut(s)	725, 737
Sse9I	AATT	6 cut(s)	314, 395, 449, 693, 836, 1008
SsiI	CCGC	9 cut(s)	135, 161, 170, 214, 217, 237, 270, 378, 644
SspI	AATATT	1 cut(s)	1020
SstI	GAGCTC	2 cut(s)	359, 531
StyD4I	CCNGG	3 cut(s)	123, 192, 861
TaaI	ACNGT	4 cut(s)	88, 147, 303, 569
TaiI	ACGT	2 cut(s)	264, 874
TaqI	TCGA	2 cut(s)	93, 480
TaqII	GACCGA	2 cut(s)	114, 445
TasI	AATT	6 cut(s)	314, 395, 449, 693, 836, 1008
TauI	GCSGC	3 cut(s)	216, 219, 240
TfiI	GAWTC	6 cut(s)	46, 364, 425, 487, 848, 902
Tru1I	TTAA	8 cut(s)	42, 204, 390, 738, 776, 839, 972, 1023
Tru9I	TTAA	8 cut(s)	42, 204, 390, 738, 776, 839, 972, 1023
TscAI	CASTG	4 cut(s)	34, 111, 152, 499
TseI	GCWGC	3 cut(s)	137, 272, 674
TspDTI	ATGAA	8 cut(s)	17, 71, 307, 663, 678, 705, 731, 861
TspGWI	ACGGA	4 cut(s)	773, 899, 914, 969
TspRI	CASTG	4 cut(s)	34, 111, 152, 499
Van91I	CCANNNNNTGG	1 cut(s)	508
Vha464I	CTTAAG	1 cut(s)	737
VpaK11BI	GGWCC	2 cut(s)	742, 938
XapI	RAATTY	1 cut(s)	1008
XmiI	GTMKAC	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.