Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0019472

Physical Location & Seq

Genomic Coordinates Reverse (-)

53598263 .. 53600051

Gene Structure 1789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCGGCGCCGTATTTGATTACGAAGCTGGAATCTGCAGAGAAGACATGGAAGGAATTATCGGTCAAGCTGGCTGATCCAGATGTCGAGTCGAATCCCAGTGAGTCCCAGAGGCTGGCACAATCGGTGGCGGAGCTCGATGAGGTTGTGTCAATCTGTAAGGAATATGAGGACTGTGAGAAGCAGTTAGAAGAGAGTAAAGCTTTAGCGGATGAAGATGGCAATGATGAAGAAATGGCTGCAATGATATCGTATGAAATTGAGTCTTTGTCCAATCAAATGAAAGAACTTGAGGAGAAGCTTAAGGCTGAAAGAGGAGGATACAAGACCTATGTGATGGAGATCAAAGGAAAGCGCGTATACAGCAAATTAAAATATGAATCTGGTGTTCACCGGGTTCAACGTGTTCCTCATACGGAAACAATGAGTACGGATTCTGTGCCAGTCAGTTGTCCAACAATGTCTGCAGGACCAAAGTATGAGTACGGATGTGTTGATGGAGTTAACATTCAAGAAACCAATAGAGGCTTCTGCTCCAAAATTTGTGGAATATTTAATGGACTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006996 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0061024 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

189

Amino Acids

21.16

Weight (kDa)

4.73

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	14 - 102	1.2e-10	PCRF domain
PCRF	PF03462	103 - 142	3.6e-14	PCRF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019472)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014089
rosa_multiflora	Rmu_sc0001556.1_g000022 Rmu_sc0015522.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074430 Rroxscaffold_4G00322990
rosa_samantha	Rh4AG408300 Rh4DG027300 Rh7CG279400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccB7I	CCANNNNNTGG	1 cut(s)	115
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	357
AciI	CCGC	3 cut(s)	5, 131, 209
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	540
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	2 cut(s)	430, 485
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflII	CTTAAG	1 cut(s)	302
AflIII	ACRYGT	1 cut(s)	403
AgsI	TTSAA	2 cut(s)	401, 512
AjuI	GAANNNNNNNTTGG	2 cut(s)	512, 544
AluBI	AGCT	5 cut(s)	28, 70, 136, 203, 301
AluI	AGCT	5 cut(s)	28, 70, 136, 203, 301
Alw21I	GWGCWC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	540
AspLEI	GCGC	2 cut(s)	10, 357
AspS9I	GGNCC	1 cut(s)	470
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	3 cut(s)	212, 331, 491
BcgI	CGANNNNNNTGC	2 cut(s)	231, 265
BciVI	GTATCC	1 cut(s)	314
BcnI	CCSGG	1 cut(s)	395
BfmI	CTRYAG	2 cut(s)	36, 465
BfoI	RGCGCY	1 cut(s)	11
BfrI	CTTAAG	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	314
BisI	GCNGC	2 cut(s)	6, 240
BlsI	GCNGC	2 cut(s)	7, 241
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	470
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	395
BmrI	ACTGGG	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse1I	ACTGG	3 cut(s)	99, 443, 567
Bse3DI	GCAATG	2 cut(s)	229, 249
Bse8I	GATNNNNATC	1 cut(s)	341
BseGI	GGATG	2 cut(s)	217, 494
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	2 cut(s)	229, 249
BseNI	ACTGG	3 cut(s)	99, 443, 567
BseRI	GAGGAG	2 cut(s)	308, 330
BseXI	GCAGC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	357
BshNI	GGYRCC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	76, 342
BspACI	CCGC	3 cut(s)	5, 131, 209
BspFNI	CGCG	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	9
BspMAI	CTGCAG	2 cut(s)	40, 469
BspPI	GGATC	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	7
BspTI	CTTAAG	1 cut(s)	302
BsrDI	GCAATG	2 cut(s)	229, 249
BsrI	ACTGG	3 cut(s)	99, 443, 567
BssMI	GATC	2 cut(s)	76, 342
BssNAI	GTATAC	1 cut(s)	361
BssNI	GRCGYC	1 cut(s)	8
Bst1107I	GTATAC	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	1 cut(s)	186
BstACI	GRCGYC	1 cut(s)	8
BstAFI	CTTAAG	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	72, 117
BstF5I	GGATG	2 cut(s)	217, 494
BstFNI	CGCG	1 cut(s)	357
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	2 cut(s)	10, 357
BstKTI	GATC	2 cut(s)	79, 345
BstMBI	GATC	2 cut(s)	76, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	2 cut(s)	36, 465
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	50
BstZ17I	GTATAC	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	217, 494
BtsIMutI	CAGTG	1 cut(s)	106
Cac8I	GCNNGC	2 cut(s)	72, 117
CaiI	CAGNNNCTG	1 cut(s)	115
CfoI	GCGC	2 cut(s)	10, 357
Cfr13I	GGNCC	1 cut(s)	470
Csp6I	GTAC	2 cut(s)	429, 484
CspCI	CAANNNNNGTGG	2 cut(s)	526, 561
CviAII	CATG	1 cut(s)	48
CviQI	GTAC	2 cut(s)	429, 484
DinI	GGCGCC	1 cut(s)	9
DpnI	GATC	2 cut(s)	78, 344
DpnII	GATC	2 cut(s)	76, 342
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	138
Eco32I	GATATC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	470
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoRV	GATATC	1 cut(s)	249
EcoT38I	GRGCYC	1 cut(s)	138
EgeI	GGCGCC	1 cut(s)	9
EheI	GGCGCC	1 cut(s)	9
FaeI	CATG	1 cut(s)	51
FaiI	YATR	8 cut(s)	49, 168, 255, 333, 361, 378, 414, 480
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	1 cut(s)	47
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	2 cut(s)	6, 240
FokI	GGATG	2 cut(s)	224, 501
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	6, 240
GlaI	GCGC	2 cut(s)	9, 356
GluI	GCNGC	2 cut(s)	6, 240
HaeII	RGCGCY	1 cut(s)	11
HapII	CCGG	1 cut(s)	394
HhaI	GCGC	2 cut(s)	10, 357
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	51
Hin6I	GCGC	2 cut(s)	8, 355
HinP1I	GCGC	2 cut(s)	8, 355
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	2 cut(s)	201, 299
HinfI	GANTC	7 cut(s)	32, 89, 94, 104, 263, 380, 434
HpaI	GTTAAC	1 cut(s)	505
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	3 cut(s)	361, 391, 505
Hpy188III	TCNNGA	2 cut(s)	80, 512
Hpy8I	GTNNAC	3 cut(s)	361, 391, 505
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	3 cut(s)	38, 242, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	403
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	51
HspAI	GCGC	2 cut(s)	8, 355
KasI	GGCGCC	1 cut(s)	7
KspAI	GTTAAC	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	76, 342
LmnI	GCTCC	2 cut(s)	133, 539
Lsp1109I	GCAGC	1 cut(s)	226
MaeII	ACGT	1 cut(s)	403
MalI	GATC	2 cut(s)	78, 344
MboI	GATC	2 cut(s)	76, 342
MboII	GAAGA	4 cut(s)	55, 203, 227, 242
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	4 cut(s)	56, 258, 368, 540
Mly113I	GGCGCC	1 cut(s)	8
MlyI	GAGTC	3 cut(s)	98, 113, 272
MmeI	TCCRAC	1 cut(s)	479
MnlI	CCTC	8 cut(s)	105, 136, 163, 286, 308, 311, 420, 518
MseI	TTAA	4 cut(s)	303, 371, 504, 555
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	1 cut(s)	395
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	363
NarI	GGCGCC	1 cut(s)	8
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	2 cut(s)	76, 342
NlaIII	CATG	1 cut(s)	51
NlaIV	GGNNCC	1 cut(s)	9
PfeI	GAWTC	4 cut(s)	32, 94, 380, 434
PflMI	CCANNNNNTGG	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	7, 241
PleI	GAGTC	3 cut(s)	97, 112, 271
PluTI	GGCGCC	1 cut(s)	11
PpsI	GAGTC	3 cut(s)	97, 112, 271
Psp124BI	GAGCTC	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	470
PstI	CTGCAG	2 cut(s)	40, 469
PstNI	CAGNNNCTG	1 cut(s)	115
RsaI	GTAC	2 cut(s)	430, 485
RsaNI	GTAC	2 cut(s)	429, 484
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	4 cut(s)	303, 371, 504, 555
SatI	GCNGC	2 cut(s)	6, 240
Sau3AI	GATC	2 cut(s)	76, 342
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	3 cut(s)	98, 113, 272
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	8 cut(s)	30, 72, 138, 147, 205, 303, 332, 406
SfcI	CTRYAG	2 cut(s)	36, 465
SfoI	GGCGCC	1 cut(s)	9
SinI	GGWCC	1 cut(s)	470
SmlI	CTYRAG	2 cut(s)	290, 302
SmoI	CTYRAG	2 cut(s)	290, 302
Sse9I	AATT	4 cut(s)	56, 258, 368, 540
SsiI	CCGC	3 cut(s)	5, 131, 209
SspDI	GGCGCC	1 cut(s)	7
SspI	AATATT	1 cut(s)	552
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	3 cut(s)	87, 92, 138
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	4 cut(s)	56, 258, 368, 540
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	4 cut(s)	32, 94, 380, 434
Tru1I	TTAA	4 cut(s)	303, 371, 504, 555
Tru9I	TTAA	4 cut(s)	303, 371, 504, 555
TscAI	CASTG	1 cut(s)	106
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	5 cut(s)	228, 243, 270, 296, 393
TspGWI	ACGGA	3 cut(s)	431, 446, 501
TspRI	CASTG	1 cut(s)	106
Van91I	CCANNNNNTGG	1 cut(s)	115
Vha464I	CTTAAG	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	470
XapI	RAATTY	1 cut(s)	540
XmiI	GTMKAC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.