Rh7CG279400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019472
Physical Location & Seq
Forward (+)
28306243 .. 28307869
1627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG279400.1

Sequence Viewer

Length: 198 bp
ATGAGTGGCCTCACCACCACCTCCGCGATTACTCGCAATCCCAGCACGACACCGTTTCACCGACAATTCATGGACTTCCATCGCCATCCCCAAACCTCATCTCAGAGCTCCACGAATCATTTGCATGGCGGCGCCGTATTTGATTACGAAGCTGGAATCTGCAGAGAAGACATGGAAGGAATTATCGGGGTATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.15

Weight (kDa)

6.14

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019472)

Species Orthologous Gene IDs
rosa_laevigata RLG00000014089
rosa_multiflora Rmu_sc0001556.1_g000022 Rmu_sc0015522.1_g000002
rosa_roxburghii Rroxscaffold_1G00074430 Rroxscaffold_4G00322990
rosa_samantha Rh4AG408300 Rh4DG027300 Rh7CG279400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AccII CGCG 1 cut(s) 26
AciI CCGC 2 cut(s) 24, 129
AcyI GRCGYC 1 cut(s) 132
AluBI AGCT 2 cut(s) 108, 152
AluI AGCT 2 cut(s) 108, 152
Alw21I GWGCWC 1 cut(s) 110
AoxI GGCC 1 cut(s) 7
AspLEI GCGC 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 4, 50
BanI GGYRCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 110
BccI CCATC 2 cut(s) 87, 93
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BfmI CTRYAG 1 cut(s) 160
BfoI RGCGCY 1 cut(s) 135
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 133
BpiI GAAGAC 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 132
BseGI GGATG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 116
BseYI CCCAGC 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 9
BshNI GGYRCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 110
BsnI GGCC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 110
BspACI CCGC 2 cut(s) 24, 129
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 115
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 133
BspMAI CTGCAG 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 131
BssNI GRCGYC 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 85
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstSFI CTRYAG 1 cut(s) 160
BstUI CGCG 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 174
BsuRI GGCC 1 cut(s) 9
BtgZI GCGATG 1 cut(s) 65
BtsCI GGATG 1 cut(s) 85
CfoI GCGC 1 cut(s) 134
CviAII CATG 3 cut(s) 70, 125, 172
CviJI RGCY 3 cut(s) 9, 108, 152
CviKI_1 RGCY 3 cut(s) 9, 108, 152
DdeI CTNAG 1 cut(s) 102
DinI GGCGCC 1 cut(s) 133
Ecl136II GAGCTC 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 110
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
FaeI CATG 3 cut(s) 73, 128, 175
FaiI YATR 3 cut(s) 71, 126, 173
FatI CATG 3 cut(s) 69, 124, 171
Fnu4HI GCNGC 1 cut(s) 130
FokI GGATG 1 cut(s) 72
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 130
GlaI GCGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 130
GsaI CCCAGC 1 cut(s) 45
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 1 cut(s) 9
HhaI GCGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 3 cut(s) 73, 128, 175
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HinfI GANTC 2 cut(s) 115, 156
HphI GGTGA 2 cut(s) 4, 50
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 195
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4V TGCA 2 cut(s) 124, 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 3 cut(s) 73, 128, 175
HspAI GCGC 1 cut(s) 132
KasI GGCGCC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 2 cut(s) 55, 138
MboII GAAGA 1 cut(s) 179
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 2 cut(s) 65, 180
Mly113I GGCGCC 1 cut(s) 132
MnlI CCTC 3 cut(s) 20, 31, 106
MslI CAYNNNNRTG 1 cut(s) 123
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 42
NarI GGCGCC 1 cut(s) 132
NlaIII CATG 3 cut(s) 73, 128, 175
NlaIV GGNNCC 1 cut(s) 133
PfeI GAWTC 2 cut(s) 115, 156
PkrI GCNGC 1 cut(s) 131
PluTI GGCGCC 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 133
PstI CTGCAG 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 123
SacI GAGCTC 1 cut(s) 110
SatI GCNGC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 110
SetI ASST 4 cut(s) 23, 98, 110, 154
SfcI CTRYAG 1 cut(s) 160
SfoI GGCGCC 1 cut(s) 133
SgeI CNNG 9 cut(s) 37, 45, 54, 58, 82, 124, 137, 165, 184
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 2 cut(s) 65, 180
SsiI CCGC 2 cut(s) 24, 129
SspDI GGCGCC 1 cut(s) 131
SstI GAGCTC 1 cut(s) 110
TaaI ACNGT 1 cut(s) 54
TasI AATT 2 cut(s) 65, 180
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 2 cut(s) 115, 156
TspDTI ATGAA 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.