Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0019472

Physical Location & Seq

Genomic Coordinates Forward (+)

95427136 .. 95430602

Gene Structure 3467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00074430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGCCGGAGTCGCCGGAAAAGCCGAGGAACACCGAAAAAGCTTTAAGCTTCCAAGCTTCAAATCTCTCTCCACGCTCTTCCCTACTCAACCCTCTTCCCTCCTCAACCCCAGCCCCTACGGTGTTCGACGACCAAGCAGTGGCTGGGGCTCTCCTCCGGGTCAGCACCGCAGCTTTTTACAGTGCTCCTCCTCCTCCGCCGCTCACGGAGCAGAGGATCGTGCCTCTCCCGGAGAAGGTCAAGAAGAGCCATCGCGCTTTTCTTCCCCACGGCGGCAATGAGTGGCCTCACCACCACCTCCGCACCGCCGCGATTACTCGCAATCCCAGCACGACACCGTTTCACCGACAATTCATGGACTTCCATCGCCATCCCCAAACCTCATCTCAGAGCTCCATGAATCATTTGCATGGCGGTCAGTCCATTAAGCAATTCGCGCCGTATTTGATTACGAAGCTGGAATCTGCAGAGAAGACATGGAAGGAATTATCGGTTAAGCTGGCTGATCCAGATGTCATGTCGAATCCCAGTGAGTACCAGAGGCTGGCACAATCTGTGGCGGAGCTCGATGAGGTTGTGTCAATCTATAAGGAATATAAGGACTGTGAGAAGCTGTTAGAAGAGAGTAAAGCTTTAGAGGATGAAGATGGCAATGATGAAGAAATGGCAGCAATGATATCGTATGAAATTGAGTCTTTGTCCAATCAAATGAAAGAACTTGAGGAGAAGCTTAAGGCTGAAAGAGAGGAGGGATACAAGACCTATGTGATGGAGATCAAAGGAAAGCGCGTATACAGCAAATTAAAATATGAATCTGGTGTTCACCGGGTTCAACGTGTTCCTCATACTGAAACAATGAGTACGGATTCTGCGCCAGTCAGTTGTCCAACAATGTCTGTAGGACCAAAGTATGAGTACGGATGTGTTGATGGAGTTAACATTCAAGAAACCAATAGAGGCTTCTGCTCCAAAATTTGTGGAATATTTAATGGACTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003747 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006412 GO:0006415 GO:0006518 GO:0006807 GO:0006996 GO:0008079 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009668 GO:0009987 GO:0010027 GO:0010467 GO:0016043 GO:0019538 GO:0022411 GO:0032544 GO:0032984 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0061024 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCRF RF-1

Protein Analysis

333

Amino Acids

37.4

Weight (kDa)

5.98

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCRF	PF03462	157 - 245	6.3e-11	PCRF domain
PCRF	PF03462	247 - 286	1.9e-13	PCRF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019472)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000014089
rosa_multiflora	Rmu_sc0001556.1_g000022 Rmu_sc0015522.1_g000002
rosa_roxburghii	Rroxscaffold_1G00074430 Rroxscaffold_4G00322990
rosa_samantha	Rh4AG408300 Rh4DG027300 Rh7CG279400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	139, 544
AccBSI	CCGCTC	1 cut(s)	202
AccI	GTMKAC	1 cut(s)	792
AccII	CGCG	4 cut(s)	255, 311, 437, 789
AciI	CCGC	9 cut(s)	168, 197, 200, 273, 301, 306, 309, 414, 560
AclWI	GGATC	2 cut(s)	224, 500
AcsI	RAATTY	1 cut(s)	972
AfaI	GTAC	3 cut(s)	536, 862, 917
AfiI	CCNNNNNNNGG	4 cut(s)	139, 235, 272, 544
AflII	CTTAAG	1 cut(s)	731
AflIII	ACRYGT	1 cut(s)	835
AgsI	TTSAA	3 cut(s)	60, 833, 944
AjuI	GAANNNNNNNTTGG	2 cut(s)	944, 976
Alw21I	GWGCWC	3 cut(s)	187, 395, 567
AlwI	GGATC	2 cut(s)	224, 500
AlwNI	CAGNNNCTG	2 cut(s)	143, 544
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	2 cut(s)	170, 668
ApoI	RAATTY	1 cut(s)	972
AspLEI	GCGC	4 cut(s)	257, 439, 789, 874
AspS9I	GGNCC	1 cut(s)	902
AsuC2I	CCSGG	3 cut(s)	158, 230, 827
AsuHPI	GGTGA	3 cut(s)	281, 335, 815
AvaII	GGWCC	1 cut(s)	902
BanII	GRGCYC	3 cut(s)	151, 395, 567
BbsI	GAAGAC	1 cut(s)	479
Bbv12I	GWGCWC	3 cut(s)	187, 395, 567
BbvI	GCAGC	2 cut(s)	182, 680
BccI	CCATC	6 cut(s)	258, 372, 378, 641, 763, 923
BceAI	ACGGC	2 cut(s)	286, 424
BcgI	CGANNNNNNTGC	2 cut(s)	660, 694
BciVI	GTATCC	1 cut(s)	746
BcnI	CCSGG	3 cut(s)	158, 230, 827
BfmI	CTRYAG	2 cut(s)	465, 897
BfrI	CTTAAG	1 cut(s)	731
BfuI	GTATCC	1 cut(s)	746
BisI	GCNGC	5 cut(s)	171, 200, 274, 309, 669
BlsI	GCNGC	5 cut(s)	172, 201, 275, 310, 670
Bme1390I	CCNGG	3 cut(s)	158, 230, 827
Bme18I	GGWCC	1 cut(s)	902
BmgT120I	GGNCC	1 cut(s)	902
BmrFI	CCNGG	3 cut(s)	158, 230, 827
BmrI	ACTGGG	1 cut(s)	522
BmuI	ACTGGG	1 cut(s)	522
BpiI	GAAGAC	1 cut(s)	479
BpuEI	CTTGAG	1 cut(s)	740
BpuMI	CCSGG	3 cut(s)	158, 230, 827
BsaBI	GATNNNNATC	1 cut(s)	773
BsaJI	CCNNGG	2 cut(s)	23, 268
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 235, 272, 544
Bse1I	ACTGG	3 cut(s)	528, 875, 999
Bse3DI	GCAATG	3 cut(s)	283, 658, 678
Bse8I	GATNNNNATC	1 cut(s)	773
BseDI	CCNNGG	2 cut(s)	23, 268
BseGI	GGATG	3 cut(s)	370, 646, 926
BseJI	GATNNNNATC	1 cut(s)	773
BseLI	CCNNNNNNNGG	4 cut(s)	139, 235, 272, 544
BseMI	GCAATG	3 cut(s)	283, 658, 678
BseMII	CTCAG	1 cut(s)	401
BseNI	ACTGG	3 cut(s)	528, 875, 999
BseRI	GAGGAG	7 cut(s)	91, 143, 177, 180, 183, 737, 761
BseXI	GCAGC	2 cut(s)	182, 680
BseYI	CCCAGC	3 cut(s)	109, 143, 326
Bsh1236I	CGCG	4 cut(s)	255, 311, 437, 789
BshFI	GGCC	1 cut(s)	286
BsiHKAI	GWGCWC	3 cut(s)	187, 395, 567
BsiSI	CCGG	5 cut(s)	5, 14, 157, 230, 826
BslI	CCNNNNNNNGG	4 cut(s)	139, 235, 272, 544
BsnI	GGCC	1 cut(s)	286
Bsp1286I	GDGCHC	4 cut(s)	151, 187, 395, 567
Bsp143I	GATC	3 cut(s)	216, 505, 774
BspACI	CCGC	9 cut(s)	168, 197, 200, 273, 301, 306, 309, 414, 560
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	400
BspFNI	CGCG	4 cut(s)	255, 311, 437, 789
BspMAI	CTGCAG	1 cut(s)	469
BspPI	GGATC	2 cut(s)	224, 500
BspQI	GCTCTTC	2 cut(s)	82, 239
BspTI	CTTAAG	1 cut(s)	731
BsrBI	CCGCTC	1 cut(s)	202
BsrDI	GCAATG	3 cut(s)	283, 658, 678
BsrI	ACTGG	3 cut(s)	528, 875, 999
BssECI	CCNNGG	2 cut(s)	23, 268
BssMI	GATC	3 cut(s)	216, 505, 774
BssNAI	GTATAC	1 cut(s)	793
Bst1107I	GTATAC	1 cut(s)	793
Bst4CI	ACNGT	4 cut(s)	121, 182, 339, 605
Bst6I	CTCTTC	4 cut(s)	82, 99, 239, 615
BstAFI	CTTAAG	1 cut(s)	731
BstC8I	GCNNGC	2 cut(s)	501, 546
BstDEI	CTNAG	1 cut(s)	387
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	3 cut(s)	370, 646, 926
BstFNI	CGCG	4 cut(s)	255, 311, 437, 789
BstHHI	GCGC	4 cut(s)	257, 439, 789, 874
BstKTI	GATC	3 cut(s)	219, 508, 777
BstMBI	GATC	3 cut(s)	216, 505, 774
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 19, 208, 327, 436, 795
BstSCI	CCNGG	3 cut(s)	156, 228, 825
BstSFI	CTRYAG	2 cut(s)	465, 897
BstUI	CGCG	4 cut(s)	255, 311, 437, 789
BstV1I	GCAGC	2 cut(s)	182, 680
BstV2I	GAAGAC	1 cut(s)	479
BstZ17I	GTATAC	1 cut(s)	793
BsuI	GTATCC	1 cut(s)	746
BsuRI	GGCC	1 cut(s)	286
BtgI	CCRYGG	1 cut(s)	268
BtgZI	GCGATG	2 cut(s)	236, 350
BtsCI	GGATG	3 cut(s)	370, 646, 926
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	3 cut(s)	144, 187, 535
Cac8I	GCNNGC	2 cut(s)	501, 546
CaiI	CAGNNNCTG	2 cut(s)	143, 544
CfoI	GCGC	4 cut(s)	257, 439, 789, 874
Cfr13I	GGNCC	1 cut(s)	902
Csp6I	GTAC	3 cut(s)	535, 861, 916
CspCI	CAANNNNNGTGG	2 cut(s)	958, 993
CviAII	CATG	5 cut(s)	355, 397, 410, 477, 517
CviQI	GTAC	3 cut(s)	535, 861, 916
DdeI	CTNAG	1 cut(s)	387
DpnI	GATC	3 cut(s)	218, 507, 776
DpnII	GATC	3 cut(s)	216, 505, 774
Eam1104I	CTCTTC	4 cut(s)	82, 99, 239, 615
EarI	CTCTTC	4 cut(s)	82, 99, 239, 615
EciI	GGCGGA	2 cut(s)	186, 575
Ecl136II	GAGCTC	2 cut(s)	393, 565
Eco24I	GRGCYC	3 cut(s)	151, 395, 567
Eco32I	GATATC	1 cut(s)	678
Eco47I	GGWCC	1 cut(s)	902
Eco53kI	GAGCTC	2 cut(s)	393, 565
EcoICRI	GAGCTC	2 cut(s)	393, 565
EcoRV	GATATC	1 cut(s)	678
EcoT38I	GRGCYC	3 cut(s)	151, 395, 567
FaeI	CATG	5 cut(s)	358, 400, 413, 480, 520
FatI	CATG	5 cut(s)	354, 396, 409, 476, 516
FblI	GTMKAC	1 cut(s)	792
Fnu4HI	GCNGC	5 cut(s)	171, 200, 274, 309, 669
FokI	GGATG	3 cut(s)	357, 653, 933
FriOI	GRGCYC	3 cut(s)	151, 395, 567
Fsp4HI	GCNGC	5 cut(s)	171, 200, 274, 309, 669
GlaI	GCGC	4 cut(s)	256, 438, 788, 873
GluI	GCNGC	5 cut(s)	171, 200, 274, 309, 669
GsaI	CCCAGC	3 cut(s)	113, 147, 330
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	5 cut(s)	5, 14, 157, 230, 826
HhaI	GCGC	4 cut(s)	257, 439, 789, 874
Hin1II	CATG	5 cut(s)	358, 400, 413, 480, 520
Hin6I	GCGC	4 cut(s)	255, 437, 787, 872
HinP1I	GCGC	4 cut(s)	255, 437, 787, 872
HincII	GTYRAC	1 cut(s)	937
HindII	GTYRAC	1 cut(s)	937
HindIII	AAGCTT	5 cut(s)	39, 46, 54, 630, 728
HinfI	GANTC	7 cut(s)	8, 400, 461, 523, 692, 812, 866
HpaI	GTTAAC	1 cut(s)	937
HpaII	CCGG	5 cut(s)	5, 14, 157, 230, 826
HphI	GGTGA	3 cut(s)	281, 335, 815
Hpy166II	GTNNAC	3 cut(s)	793, 823, 937
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	3 cut(s)	241, 509, 944
Hpy8I	GTNNAC	3 cut(s)	793, 823, 937
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	229, 475
HpyCH4III	ACNGT	4 cut(s)	121, 182, 339, 605
HpyCH4IV	ACGT	1 cut(s)	835
HpyCH4V	TGCA	2 cut(s)	409, 467
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 19, 208, 327, 436, 795
HpyF3I	CTNAG	1 cut(s)	387
HpySE526I	ACGT	1 cut(s)	835
Hsp92II	CATG	5 cut(s)	358, 400, 413, 480, 520
HspAI	GCGC	4 cut(s)	255, 437, 787, 872
KspAI	GTTAAC	1 cut(s)	937
Kzo9I	GATC	3 cut(s)	216, 505, 774
LguI	GCTCTTC	2 cut(s)	82, 239
LmnI	GCTCC	5 cut(s)	190, 208, 398, 562, 971
Lsp1109I	GCAGC	2 cut(s)	182, 680
MaeII	ACGT	1 cut(s)	835
MalI	GATC	3 cut(s)	218, 507, 776
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	3 cut(s)	216, 505, 774
MboII	GAAGA	8 cut(s)	69, 86, 254, 256, 484, 632, 656, 671
MhlI	GDGCHC	4 cut(s)	151, 187, 395, 567
MluCI	AATT	6 cut(s)	350, 431, 485, 687, 800, 972
MlyI	GAGTC	2 cut(s)	17, 701
MmeI	TCCRAC	1 cut(s)	911
MseI	TTAA	7 cut(s)	44, 426, 495, 732, 803, 936, 987
MslI	CAYNNNNRTG	1 cut(s)	408
MspCI	CTTAAG	1 cut(s)	731
MspI	CCGG	5 cut(s)	5, 14, 157, 230, 826
MspR9I	CCNGG	3 cut(s)	158, 230, 827
MvnI	CGCG	4 cut(s)	255, 311, 437, 789
MwoI	GCNNNNNNNGC	6 cut(s)	10, 19, 208, 327, 436, 795
NciI	CCSGG	3 cut(s)	158, 230, 827
NdeII	GATC	3 cut(s)	216, 505, 774
NlaIII	CATG	5 cut(s)	358, 400, 413, 480, 520
NmeAIII	GCCGAG	1 cut(s)	48
PciSI	GCTCTTC	2 cut(s)	82, 239
PfeI	GAWTC	5 cut(s)	400, 461, 523, 812, 866
PflMI	CCANNNNNTGG	2 cut(s)	139, 544
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	5 cut(s)	172, 201, 275, 310, 670
PleI	GAGTC	2 cut(s)	16, 700
PpsI	GAGTC	2 cut(s)	16, 700
Psp124BI	GAGCTC	2 cut(s)	395, 567
PspFI	CCCAGC	3 cut(s)	109, 143, 326
PspPI	GGNCC	1 cut(s)	902
PstI	CTGCAG	1 cut(s)	469
PstNI	CAGNNNCTG	2 cut(s)	143, 544
RsaI	GTAC	3 cut(s)	536, 862, 917
RsaNI	GTAC	3 cut(s)	535, 861, 916
RseI	CAYNNNNRTG	1 cut(s)	408
SacI	GAGCTC	2 cut(s)	395, 567
SapI	GCTCTTC	2 cut(s)	82, 239
SaqAI	TTAA	7 cut(s)	44, 426, 495, 732, 803, 936, 987
SatI	GCNGC	5 cut(s)	171, 200, 274, 309, 669
Sau3AI	GATC	3 cut(s)	216, 505, 774
Sau96I	GGNCC	1 cut(s)	902
SchI	GAGTC	2 cut(s)	17, 701
ScrFI	CCNGG	3 cut(s)	158, 230, 827
SduI	GDGCHC	4 cut(s)	151, 187, 395, 567
SfcI	CTRYAG	2 cut(s)	465, 897
SinI	GGWCC	1 cut(s)	902
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	2 cut(s)	719, 731
SmoI	CTYRAG	2 cut(s)	719, 731
Sse9I	AATT	6 cut(s)	350, 431, 485, 687, 800, 972
SsiI	CCGC	9 cut(s)	168, 197, 200, 273, 301, 306, 309, 414, 560
SspI	AATATT	1 cut(s)	984
SstI	GAGCTC	2 cut(s)	395, 567
StyD4I	CCNGG	3 cut(s)	156, 228, 825
TaaI	ACNGT	4 cut(s)	121, 182, 339, 605
TaiI	ACGT	1 cut(s)	838
TaqI	TCGA	3 cut(s)	126, 521, 567
TasI	AATT	6 cut(s)	350, 431, 485, 687, 800, 972
TauI	GCSGC	3 cut(s)	202, 276, 311
TfiI	GAWTC	5 cut(s)	400, 461, 523, 812, 866
Tru1I	TTAA	7 cut(s)	44, 426, 495, 732, 803, 936, 987
Tru9I	TTAA	7 cut(s)	44, 426, 495, 732, 803, 936, 987
TscAI	CASTG	3 cut(s)	144, 187, 535
TseI	GCWGC	2 cut(s)	170, 668
TspDTI	ATGAA	7 cut(s)	343, 413, 657, 672, 699, 725, 825
TspGWI	ACGGA	3 cut(s)	221, 878, 933
TspRI	CASTG	3 cut(s)	144, 187, 535
Van91I	CCANNNNNTGG	2 cut(s)	139, 544
Vha464I	CTTAAG	1 cut(s)	731
VpaK11BI	GGWCC	1 cut(s)	902
XapI	RAATTY	1 cut(s)	972
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.