Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018230

Physical Location & Seq

Genomic Coordinates Reverse (-)

61047567 .. 61050752

Gene Structure 3186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015051

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCCCAGCAACAACAGAATCTTGGAAGCTCTGAATGTCCGGGTAACCGGGTCAGGCGAGCAGTACCTGGTCCTGGCCCATGGCTTCGGCACTAACCAGTCCACCTGGGGTTGCATTTTTCCTTTCTTCAAACCTTACTATCGCATCGTTCTATACGACCTCATTTGCGCCGGAAGTGTCAACCCCGATTACTTCGATTTCAACCGCAACACCAACCTGGACGCCTTCGTCGACGACTTGCTCAACATTCTCGACGCTGTCGGAGTCAAAAAGTTAGCCTACGTCGGCACTGACCAGTCTGCACAAAACCTAGCTCCCCAAAAACAAGATCAAATCCTGTCCCTCCGTTGCTGCAATTGTCACCGAACCACCCTCCAATCACCGACCCACCCTCGGGGATTTGAGACTTCGCAGAGAGATCCCTTTATGGCTTCGTTGTGTGGTAGTGAGGATGATAGGTCTAGTCCTCATCCCTTTCCTGGTGGCGGCGACGTACGGGGCTCTTGGACCGTGTCTCCTGATTCTCTTCTCCTCGAGGATGTCGTGGATGGCGGCGGGCTTGTGGTGGCCTGGTCTCATCGTGTTTTCATGTTGATGCGGGGTTCGTCGGGTTTTGGTAGTGGTAAACTGTGGCGGACTCAGGGCGGCGGGGACATGATGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010817 GO:0014070 GO:0016106 GO:0016114 GO:0018130 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1901700 GO:1901701 GO:1902347 GO:1902348 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

222

Amino Acids

24.31

Weight (kDa)

5.49

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	23 - 170	6.7e-06	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018230)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015051 RLG00000018209
rosa_multiflora	Rmu_sc0001997.1_g000009 Rmu_sc0006630.1_g000006 Rmu_sc0007380.1_g000007 Rmu_sc0008099.1_g000007 Rmu_sc0013513.1_g000003 Rmu_sc0016262.1_g000004
rosa_rugosa	Rorug06G0494400
rosa_samantha	Rh7BG435900
rosa_wichuraiana	Rw1G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AbsI	CCTCGAGG	1 cut(s)	533
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	8 cut(s)	205, 486, 552, 555, 598, 634, 645, 648
AclWI	GGATC	1 cut(s)	413
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	2 cut(s)	65, 495
AfiI	CCNNNNNNNGG	5 cut(s)	73, 393, 394, 479, 485
AgsI	TTSAA	2 cut(s)	130, 202
AjnI	CCWGG	6 cut(s)	66, 72, 104, 216, 478, 569
AluBI	AGCT	2 cut(s)	29, 314
AluI	AGCT	2 cut(s)	29, 314
Alw26I	GTCTC	3 cut(s)	398, 519, 579
AlwI	GGATC	1 cut(s)	413
AlwNI	CAGNNNCTG	1 cut(s)	67
Ama87I	CYCGRG	2 cut(s)	393, 533
AoxI	GGCC	2 cut(s)	75, 567
ApeKI	GCWGC	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	3 cut(s)	70, 76, 507
AsuC2I	CCSGG	2 cut(s)	41, 49
AsuHPI	GGTGA	2 cut(s)	353, 372
AvaI	CYCGRG	2 cut(s)	393, 533
AvaII	GGWCC	2 cut(s)	70, 507
BanII	GRGCYC	1 cut(s)	503
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	2 cut(s)	542, 652
BciT130I	CCWGG	6 cut(s)	68, 74, 106, 218, 480, 571
BcnI	CCSGG	2 cut(s)	41, 49
BcoDI	GTCTC	3 cut(s)	398, 519, 579
BfaI	CTAG	2 cut(s)	311, 462
BisI	GCNGC	4 cut(s)	352, 487, 553, 646
BlsI	GCNGC	4 cut(s)	353, 488, 554, 647
Bme1390I	CCNGG	8 cut(s)	41, 49, 68, 74, 106, 218, 480, 571
Bme18I	GGWCC	2 cut(s)	70, 507
BmeT110I	CYCGRG	2 cut(s)	393, 533
BmgT120I	GGNCC	3 cut(s)	70, 76, 507
BmrFI	CCNGG	8 cut(s)	41, 49, 68, 74, 106, 218, 480, 571
BmsI	GCATC	2 cut(s)	153, 585
BpuMI	CCSGG	2 cut(s)	41, 49
BsaHI	GRCGYC	1 cut(s)	222
BsaI	GGTCTC	1 cut(s)	579
BsaJI	CCNNGG	3 cut(s)	79, 105, 392
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 393, 394, 479, 485
Bse1I	ACTGG	2 cut(s)	97, 295
BseBI	CCWGG	6 cut(s)	68, 74, 106, 218, 480, 571
BseDI	CCNNGG	3 cut(s)	79, 105, 392
BseGI	GGATG	4 cut(s)	457, 469, 544, 553
BseLI	CCNNNNNNNGG	5 cut(s)	73, 393, 394, 479, 485
BseMII	CTCAG	1 cut(s)	653
BseNI	ACTGG	2 cut(s)	97, 295
BseRI	GAGGAG	1 cut(s)	521
BseXI	GCAGC	1 cut(s)	338
BseYI	CCCAGC	1 cut(s)	5
BsgI	GTGCAG	1 cut(s)	285
BshFI	GGCC	2 cut(s)	77, 569
BsiHKCI	CYCGRG	2 cut(s)	393, 533
BsiSI	CCGG	3 cut(s)	40, 48, 171
BsiWI	CGTACG	1 cut(s)	493
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	5 cut(s)	73, 393, 394, 479, 485
BsmAI	GTCTC	3 cut(s)	398, 519, 579
BsmFI	GGGAC	1 cut(s)	325
BsnI	GGCC	2 cut(s)	77, 569
Bso31I	GGTCTC	1 cut(s)	579
BsoBI	CYCGRG	2 cut(s)	393, 533
Bsp1286I	GDGCHC	1 cut(s)	503
Bsp143I	GATC	2 cut(s)	328, 418
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	8 cut(s)	205, 486, 552, 555, 598, 634, 645, 648
BspANI	GGCC	2 cut(s)	77, 569
BspCNI	CTCAG	1 cut(s)	652
BspPI	GGATC	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	579
BsrI	ACTGG	2 cut(s)	97, 295
BssECI	CCNNGG	3 cut(s)	79, 105, 392
BssMI	GATC	2 cut(s)	328, 418
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	6 cut(s)	68, 74, 106, 218, 480, 571
Bst4CI	ACNGT	2 cut(s)	511, 630
Bst6I	CTCTTC	1 cut(s)	531
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	59, 557
BstDEI	CTNAG	1 cut(s)	639
BstDSI	CCRYGG	1 cut(s)	79
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	4 cut(s)	457, 469, 544, 553
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	331, 421
BstMAI	GTCTC	3 cut(s)	398, 519, 579
BstMBI	GATC	2 cut(s)	328, 418
BstNI	CCWGG	6 cut(s)	68, 74, 106, 218, 480, 571
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	8 cut(s)	39, 47, 66, 72, 104, 216, 478, 569
BstV1I	GCAGC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	2 cut(s)	77, 569
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	4 cut(s)	457, 469, 544, 553
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	59, 557
CaiI	CAGNNNCTG	1 cut(s)	67
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	70, 76, 507
CseI	GACGC	2 cut(s)	230, 263
CsiI	ACCWGGT	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	64, 494
CviAII	CATG	3 cut(s)	80, 589, 655
CviJI	RGCY	9 cut(s)	29, 77, 84, 278, 314, 431, 501, 559, 569
CviKI_1	RGCY	9 cut(s)	29, 77, 84, 278, 314, 431, 501, 559, 569
CviQI	GTAC	2 cut(s)	64, 494
DdeI	CTNAG	1 cut(s)	639
DpnI	GATC	2 cut(s)	330, 420
DpnII	GATC	2 cut(s)	328, 418
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
EciI	GGCGGA	1 cut(s)	649
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	503
Eco31I	GGTCTC	1 cut(s)	579
Eco47I	GGWCC	2 cut(s)	70, 507
Eco88I	CYCGRG	2 cut(s)	393, 533
Eco91I	GGTNACC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	6 cut(s)	66, 72, 104, 216, 478, 569
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	503
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	3 cut(s)	83, 592, 658
FaiI	YATR	5 cut(s)	81, 154, 428, 590, 656
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	3 cut(s)	79, 588, 654
FauI	CCCGC	3 cut(s)	548, 591, 641
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	352, 487, 553, 646
FokI	GGATG	4 cut(s)	456, 464, 551, 560
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	4 cut(s)	352, 487, 553, 646
FspBI	CTAG	2 cut(s)	311, 462
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	4 cut(s)	352, 487, 553, 646
GsaI	CCCAGC	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	77, 569
HapII	CCGG	3 cut(s)	40, 48, 171
HgaI	GACGC	2 cut(s)	230, 263
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	83, 592, 658
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	2 cut(s)	181, 232
HindII	GTYRAC	2 cut(s)	181, 232
HinfI	GANTC	4 cut(s)	18, 264, 521, 637
HpaII	CCGG	3 cut(s)	40, 48, 171
HphI	GGTGA	2 cut(s)	353, 372
Hpy166II	GTNNAC	4 cut(s)	102, 181, 232, 626
Hpy188I	TCNGA	2 cut(s)	33, 263
Hpy188III	TCNNGA	2 cut(s)	251, 518
Hpy8I	GTNNAC	4 cut(s)	102, 181, 232, 626
Hpy99I	CGWCG	6 cut(s)	233, 236, 257, 287, 494, 610
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	2 cut(s)	511, 630
HpyCH4IV	ACGT	2 cut(s)	282, 492
HpyCH4V	TGCA	3 cut(s)	114, 302, 354
HpyF3I	CTNAG	1 cut(s)	639
HpySE526I	ACGT	2 cut(s)	282, 492
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	83, 592, 658
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	328, 418
LmnI	GCTCC	1 cut(s)	319
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	2 cut(s)	153, 585
MabI	ACCWGGT	1 cut(s)	66
MaeI	CTAG	2 cut(s)	311, 462
MaeII	ACGT	2 cut(s)	282, 492
MaeIII	GTNAC	2 cut(s)	43, 359
MalI	GATC	2 cut(s)	330, 420
MboI	GATC	2 cut(s)	328, 418
MboII	GAAGA	2 cut(s)	118, 518
MfeI	CAATTG	1 cut(s)	355
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	503
MluCI	AATT	1 cut(s)	355
MlyI	GAGTC	2 cut(s)	273, 631
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	8 cut(s)	170, 353, 383, 402, 442, 477, 529, 542
MslI	CAYNNNNRTG	1 cut(s)	593
MspI	CCGG	3 cut(s)	40, 48, 171
MspR9I	CCNGG	8 cut(s)	41, 49, 68, 74, 106, 218, 480, 571
MunI	CAATTG	1 cut(s)	355
MvaI	CCWGG	6 cut(s)	68, 74, 106, 218, 480, 571
NciI	CCSGG	2 cut(s)	41, 49
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	2 cut(s)	328, 418
NlaIII	CATG	3 cut(s)	83, 592, 658
NmuCI	GTSAC	1 cut(s)	359
PaeR7I	CTCGAG	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	3 cut(s)	153, 228, 540
PfeI	GAWTC	2 cut(s)	18, 521
Pfl23II	CGTACG	1 cut(s)	493
PflFI	GACNNNGTC	2 cut(s)	257, 511
PkrI	GCNGC	4 cut(s)	353, 488, 554, 647
PleI	GAGTC	2 cut(s)	272, 631
PpsI	GAGTC	2 cut(s)	272, 631
Psp6I	CCWGG	6 cut(s)	66, 72, 104, 216, 478, 569
PspEI	GGTNACC	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	6 cut(s)	66, 72, 104, 216, 478, 569
PspLI	CGTACG	1 cut(s)	493
PspPI	GGNCC	3 cut(s)	70, 76, 507
PspXI	VCTCGAGB	1 cut(s)	533
PstNI	CAGNNNCTG	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	2 cut(s)	257, 511
RsaI	GTAC	2 cut(s)	65, 495
RsaNI	GTAC	2 cut(s)	64, 494
RseI	CAYNNNNRTG	1 cut(s)	593
SalI	GTCGAC	1 cut(s)	230
SatI	GCNGC	4 cut(s)	352, 487, 553, 646
Sau3AI	GATC	2 cut(s)	328, 418
Sau96I	GGNCC	3 cut(s)	70, 76, 507
SchI	GAGTC	2 cut(s)	273, 631
ScrFI	CCNGG	8 cut(s)	41, 49, 68, 74, 106, 218, 480, 571
SduI	GDGCHC	1 cut(s)	503
SexAI	ACCWGGT	1 cut(s)	66
SfaNI	GCATC	2 cut(s)	153, 585
Sfr274I	CTCGAG	1 cut(s)	533
SgrDI	CGTCGACG	1 cut(s)	230
SinI	GGWCC	2 cut(s)	70, 507
SlaI	CTCGAG	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	593
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	1 cut(s)	355
SsiI	CCGC	8 cut(s)	205, 486, 552, 555, 598, 634, 645, 648
SspMI	CTAG	2 cut(s)	311, 462
StyD4I	CCNGG	8 cut(s)	39, 47, 66, 72, 104, 216, 478, 569
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	511, 630
TaiI	ACGT	2 cut(s)	285, 495
TaqI	TCGA	4 cut(s)	195, 231, 252, 534
TasI	AATT	1 cut(s)	355
TauI	GCSGC	3 cut(s)	489, 555, 648
TfiI	GAWTC	2 cut(s)	18, 521
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	1 cut(s)	351
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	577
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	1 cut(s)	295
Tth111I	GACNNNGTC	2 cut(s)	257, 511
VpaK11BI	GGWCC	2 cut(s)	70, 507
XhoI	CTCGAG	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	2 cut(s)	311, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.