Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001997.1

Orthogroup ID

OG0018230

Physical Location & Seq

Genomic Coordinates Forward (+)

31841 .. 33583

Gene Structure 1743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001997.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgcccagtgacaccagaatcttggaagctctgaatgtccgggtaaccgggtcgggcaagcaatatctggtcctggcccatggctttggcactgaccagtctgcctggggtcacattcttcctttcttaaaaccatactattgcatcgttctatacgacctcgtttgcgctggaagcgtcaaccccgattacttcgatttcaaccgcaacaccaacctggacgccttcgtcgacgacttgctcaacattctcaacgctgtgggagtcaaaaagtgcacctacgtcggcactgaccagtccgtgcaaaacatagctccccaaaaacaagatcaaatcctgtccctccgtcaccgcaattgtcaccgaaccaccctccaatcaccgatccaccctcgggaatttgagcgacgttgtagtcggactggcttttatggcaggcgaacatgggatgcaagaggtggtaggagagattgggattgttggggggttggtattcgactcttgcaagctagggttgtggattgggtgggcgacacaggctctgatcaaggtggcggtaggcttggtggtggtgggctcacggatggacgaatttctggtgcgagattgagtgctacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010817 GO:0014070 GO:0016106 GO:0016114 GO:0018130 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1901700 GO:1901701 GO:1902347 GO:1902348 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

206

Amino Acids

22.9

Weight (kDa)

8.98

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018230)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015051 RLG00000018209
rosa_multiflora	Rmu_sc0001997.1_g000009 Rmu_sc0006630.1_g000006 Rmu_sc0007380.1_g000007 Rmu_sc0008099.1_g000007 Rmu_sc0013513.1_g000003 Rmu_sc0016262.1_g000004
rosa_rugosa	Rorug06G0494400
rosa_samantha	Rh7BG435900
rosa_wichuraiana	Rw1G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	227, 414
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	3 cut(s)	205, 352, 555
AclWI	GGATC	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	398, 591
AcyI	GRCGYC	1 cut(s)	222
AfiI	CCNNNNNNNGG	1 cut(s)	394
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	3 cut(s)	72, 104, 216
AluBI	AGCT	3 cut(s)	29, 314, 509
AluI	AGCT	3 cut(s)	29, 314, 509
Alw21I	GWGCWC	1 cut(s)	278
Alw44I	GTGCAC	1 cut(s)	274
AlwI	GGATC	1 cut(s)	379
AlwNI	CAGNNNCTG	1 cut(s)	542
Ama87I	CYCGRG	1 cut(s)	393
AoxI	GGCC	1 cut(s)	75
ApaLI	GTGCAC	1 cut(s)	274
ApoI	RAATTY	2 cut(s)	398, 591
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	70, 76
AsuC2I	CCSGG	2 cut(s)	41, 49
AsuHPI	GGTGA	3 cut(s)	341, 353, 372
AvaI	CYCGRG	1 cut(s)	393
AvaII	GGWCC	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	579
Bbv12I	GWGCWC	1 cut(s)	278
BccI	CCATC	1 cut(s)	578
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	3 cut(s)	74, 106, 218
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	2 cut(s)	41, 49
BfaI	CTAG	1 cut(s)	510
Bme1390I	CCNGG	5 cut(s)	41, 49, 74, 106, 218
Bme18I	GGWCC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	393
BmgT120I	GGNCC	2 cut(s)	70, 76
BmrFI	CCNGG	5 cut(s)	41, 49, 74, 106, 218
BmsI	GCATC	2 cut(s)	153, 439
BpuMI	CCSGG	2 cut(s)	41, 49
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	79, 105, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse1I	ACTGG	4 cut(s)	6, 97, 295, 427
BseBI	CCWGG	3 cut(s)	74, 106, 218
BseDI	CCNNGG	3 cut(s)	79, 105, 392
BseGI	GGATG	2 cut(s)	454, 589
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseNI	ACTGG	4 cut(s)	6, 97, 295, 427
BseSI	GKGCMC	1 cut(s)	278
BshFI	GGCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	393
BsiSI	CCGG	2 cut(s)	40, 48
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	393
Bsp1286I	GDGCHC	2 cut(s)	278, 579
Bsp143I	GATC	3 cut(s)	328, 384, 544
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	3 cut(s)	205, 352, 555
BspANI	GGCC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	379
BsrI	ACTGG	4 cut(s)	6, 97, 295, 427
BssECI	CCNNGG	3 cut(s)	79, 105, 392
BssMI	GATC	3 cut(s)	328, 384, 544
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	3 cut(s)	74, 106, 218
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	3 cut(s)	59, 437, 507
BstDSI	CCRYGG	1 cut(s)	79
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	454, 589
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	3 cut(s)	331, 387, 547
BstMBI	GATC	3 cut(s)	328, 384, 544
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 432, 537
BstNI	CCWGG	3 cut(s)	74, 106, 218
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	5 cut(s)	39, 47, 72, 104, 216
BstSLI	GKGCMC	1 cut(s)	278
BstXI	CCANNNNNNTGG	2 cut(s)	22, 86
BsuRI	GGCC	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	454, 589
BtsIMutI	CAGTG	3 cut(s)	13, 90, 288
Cac8I	GCNNGC	3 cut(s)	59, 437, 507
CaiI	CAGNNNCTG	1 cut(s)	542
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	70, 76
CseI	GACGC	2 cut(s)	166, 230
CviAII	CATG	3 cut(s)	80, 444, 618
CviJI	RGCY	9 cut(s)	29, 77, 84, 314, 426, 509, 540, 562, 577
CviKI_1	RGCY	9 cut(s)	29, 77, 84, 314, 426, 509, 540, 562, 577
DpnI	GATC	3 cut(s)	330, 386, 546
DpnII	GATC	3 cut(s)	328, 384, 544
DrdI	GACNNNNNNGTC	2 cut(s)	227, 414
DseDI	GACNNNNNNGTC	2 cut(s)	227, 414
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	579
Eco47I	GGWCC	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	393
Eco91I	GGTNACC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	72, 104, 216
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	3 cut(s)	83, 447, 621
FaiI	YATR	7 cut(s)	81, 136, 154, 311, 432, 445, 619
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	3 cut(s)	79, 443, 617
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	231
FokI	GGATG	2 cut(s)	461, 596
FriOI	GRGCYC	1 cut(s)	579
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	1 cut(s)	169
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	2 cut(s)	40, 48
HgaI	GACGC	2 cut(s)	166, 230
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	83, 447, 621
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	2 cut(s)	181, 232
HindII	GTYRAC	2 cut(s)	181, 232
HinfI	GANTC	3 cut(s)	18, 264, 498
HpaII	CCGG	2 cut(s)	40, 48
HphI	GGTGA	3 cut(s)	341, 353, 372
Hpy166II	GTNNAC	3 cut(s)	181, 232, 276
Hpy188I	TCNGA	3 cut(s)	33, 420, 544
Hpy188III	TCNNGA	1 cut(s)	395
Hpy8I	GTNNAC	3 cut(s)	181, 232, 276
Hpy99I	CGWCG	4 cut(s)	233, 236, 287, 411
HpyAV	CCTTC	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	282, 409
HpyCH4V	TGCA	5 cut(s)	144, 276, 304, 452, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 432, 537
HpySE526I	ACGT	2 cut(s)	282, 409
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	83, 447, 621
HspAI	GCGC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	328, 384, 544
LmnI	GCTCC	1 cut(s)	319
LweI	GCATC	2 cut(s)	153, 439
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	2 cut(s)	282, 409
MaeIII	GTNAC	5 cut(s)	8, 43, 110, 347, 359
MalI	GATC	3 cut(s)	330, 386, 546
MboI	GATC	3 cut(s)	328, 384, 544
MboII	GAAGA	1 cut(s)	110
MfeI	CAATTG	1 cut(s)	355
MhlI	GDGCHC	2 cut(s)	278, 579
MluCI	AATT	3 cut(s)	355, 398, 591
MlyI	GAGTC	2 cut(s)	273, 492
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	5 cut(s)	170, 353, 383, 402, 449
MseI	TTAA	1 cut(s)	128
MspI	CCGG	2 cut(s)	40, 48
MspR9I	CCNGG	5 cut(s)	41, 49, 74, 106, 218
MunI	CAATTG	1 cut(s)	355
MvaI	CCWGG	3 cut(s)	74, 106, 218
MwoI	GCNNNNNNNGC	3 cut(s)	174, 432, 537
NciI	CCSGG	2 cut(s)	41, 49
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	3 cut(s)	328, 384, 544
NlaIII	CATG	3 cut(s)	83, 447, 621
NmuCI	GTSAC	4 cut(s)	8, 110, 347, 359
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 228
PfeI	GAWTC	1 cut(s)	18
PleI	GAGTC	2 cut(s)	272, 492
PpsI	GAGTC	2 cut(s)	272, 492
Psp6I	CCWGG	3 cut(s)	72, 104, 216
PspEI	GGTNACC	1 cut(s)	43
PspGI	CCWGG	3 cut(s)	72, 104, 216
PspPI	GGNCC	2 cut(s)	70, 76
PstNI	CAGNNNCTG	1 cut(s)	542
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	128
Sau3AI	GATC	3 cut(s)	328, 384, 544
Sau96I	GGNCC	2 cut(s)	70, 76
SchI	GAGTC	2 cut(s)	273, 492
ScrFI	CCNGG	5 cut(s)	41, 49, 74, 106, 218
SduI	GDGCHC	2 cut(s)	278, 579
SfaNI	GCATC	2 cut(s)	153, 439
SgrDI	CGTCGACG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	70
Sse9I	AATT	3 cut(s)	355, 398, 591
SsiI	CCGC	3 cut(s)	205, 352, 555
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	5 cut(s)	39, 47, 72, 104, 216
StyI	CCWWGG	1 cut(s)	79
TaiI	ACGT	2 cut(s)	285, 412
TaqI	TCGA	3 cut(s)	195, 231, 496
TasI	AATT	3 cut(s)	355, 398, 591
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	3 cut(s)	13, 97, 295
TseFI	GTSAC	4 cut(s)	8, 110, 347, 359
Tsp45I	GTSAC	4 cut(s)	8, 110, 347, 359
TspGWI	ACGGA	3 cut(s)	289, 335, 596
TspRI	CASTG	3 cut(s)	13, 97, 295
VneI	GTGCAC	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	2 cut(s)	398, 591
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.