Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0018230

Physical Location & Seq

Genomic Coordinates Reverse (-)

1109841 .. 1110230

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G000770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCCCAGCAACACTAGAATCTTGGAAGCTCTGAATGTCCGGGTAACCGGGTCGGGCGAACAGTACCTGGTCCTGGCCCATGGCTTCAGCACTGACCAGTCCGCCTGGGGTCGCATTCTTCCTTTCTTCAAACCTTACTATCGCATCGTTCTATATGACCTCATTTGCGCCGGAAGTGTCAACCCCGATTACTTCGATTTCAACCGCTACACCAACCTGGACGCCTTCGTCGATGACTTGCTCAACATTCTCGACGCTGTGGGAGTCCAAAAGTGCGCTTACGTCGGCACTGACCAGTCCGCGCAAAACCCAGCTCCCCAACAACAAGATCAAATCTTGTCCCTCTGTCGCCGCAATTGTCACCGACCCACCCTCGAGAATTTGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010817 GO:0014070 GO:0016106 GO:0016114 GO:0018130 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1901700 GO:1901701 GO:1902347 GO:1902348 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

129

Amino Acids

14.63

Weight (kDa)

5.53

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018230)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015051 RLG00000018209
rosa_multiflora	Rmu_sc0001997.1_g000009 Rmu_sc0006630.1_g000006 Rmu_sc0007380.1_g000007 Rmu_sc0008099.1_g000007 Rmu_sc0013513.1_g000003 Rmu_sc0016262.1_g000004
rosa_rugosa	Rorug06G0494400
rosa_samantha	Rh7BG435900
rosa_wichuraiana	Rw1G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccII	CGCG	1 cut(s)	302
AciI	CCGC	4 cut(s)	102, 205, 300, 352
AcsI	RAATTY	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	70
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	130, 202
AjnI	CCWGG	4 cut(s)	66, 72, 104, 216
AluBI	AGCT	2 cut(s)	29, 314
AluI	AGCT	2 cut(s)	29, 314
AlwNI	CAGNNNCTG	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	379
AspLEI	GCGC	3 cut(s)	170, 278, 304
AspS9I	GGNCC	2 cut(s)	70, 76
AsuC2I	CCSGG	2 cut(s)	41, 49
AsuHPI	GGTGA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	70
BciT130I	CCWGG	4 cut(s)	68, 74, 106, 218
BcnI	CCSGG	2 cut(s)	41, 49
BfaI	CTAG	1 cut(s)	15
BisI	GCNGC	1 cut(s)	352
BlsI	GCNGC	1 cut(s)	353
Bme1390I	CCNGG	6 cut(s)	41, 49, 68, 74, 106, 218
Bme18I	GGWCC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	2 cut(s)	70, 76
BmrFI	CCNGG	6 cut(s)	41, 49, 68, 74, 106, 218
BmsI	GCATC	1 cut(s)	153
BpuMI	CCSGG	2 cut(s)	41, 49
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	79, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	2 cut(s)	97, 295
BseBI	CCWGG	4 cut(s)	68, 74, 106, 218
BseDI	CCNNGG	2 cut(s)	79, 105
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseNI	ACTGG	2 cut(s)	97, 295
BseYI	CCCAGC	2 cut(s)	5, 310
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	3 cut(s)	40, 48, 171
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	374
Bsp143I	GATC	1 cut(s)	328
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	4 cut(s)	102, 205, 300, 352
BspANI	GGCC	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	97, 295
BssECI	CCNNGG	2 cut(s)	79, 105
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	4 cut(s)	68, 74, 106, 218
Bst4CI	ACNGT	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	79
BstEII	GGTNACC	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	302
BstHHI	GCGC	3 cut(s)	170, 278, 304
BstKTI	GATC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	328
BstNI	CCWGG	4 cut(s)	68, 74, 106, 218
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	6 cut(s)	39, 47, 66, 72, 104, 216
BstUI	CGCG	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	90, 288
CaiI	CAGNNNCTG	1 cut(s)	67
CfoI	GCGC	3 cut(s)	170, 278, 304
Cfr13I	GGNCC	2 cut(s)	70, 76
CseI	GACGC	2 cut(s)	230, 263
CsiI	ACCWGGT	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	4 cut(s)	29, 77, 84, 314
CviKI_1	RGCY	4 cut(s)	29, 77, 84, 314
CviQI	GTAC	1 cut(s)	64
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EciI	GGCGGA	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	374
Eco91I	GGTNACC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	4 cut(s)	66, 72, 104, 216
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	1 cut(s)	83
FaiI	YATR	3 cut(s)	81, 154, 156
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	352
Fsp4HI	GCNGC	1 cut(s)	352
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	3 cut(s)	169, 277, 303
GluI	GCNGC	1 cut(s)	352
GsaI	CCCAGC	2 cut(s)	9, 314
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	3 cut(s)	40, 48, 171
HgaI	GACGC	2 cut(s)	230, 263
HhaI	GCGC	3 cut(s)	170, 278, 304
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	83
Hin6I	GCGC	3 cut(s)	168, 276, 302
HinP1I	GCGC	3 cut(s)	168, 276, 302
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	18, 264
HpaII	CCGG	3 cut(s)	40, 48, 171
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	2 cut(s)	251, 376
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	3 cut(s)	233, 257, 287
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4IV	ACGT	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	83
HspAI	GCGC	3 cut(s)	168, 276, 302
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	1 cut(s)	319
LweI	GCATC	1 cut(s)	153
MabI	ACCWGGT	1 cut(s)	66
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	2 cut(s)	43, 359
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	2 cut(s)	110, 118
MfeI	CAATTG	1 cut(s)	355
MluCI	AATT	2 cut(s)	355, 379
MlyI	GAGTC	1 cut(s)	273
MnlI	CCTC	4 cut(s)	170, 353, 378, 383
MspI	CCGG	3 cut(s)	40, 48, 171
MspR9I	CCNGG	6 cut(s)	41, 49, 68, 74, 106, 218
MunI	CAATTG	1 cut(s)	355
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	4 cut(s)	68, 74, 106, 218
MvnI	CGCG	1 cut(s)	302
NciI	CCSGG	2 cut(s)	41, 49
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	1 cut(s)	83
NmuCI	GTSAC	1 cut(s)	359
PaeR7I	CTCGAG	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PctI	GAATGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	353
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp6I	CCWGG	4 cut(s)	66, 72, 104, 216
PspEI	GGTNACC	1 cut(s)	43
PspFI	CCCAGC	2 cut(s)	5, 310
PspGI	CCWGG	4 cut(s)	66, 72, 104, 216
PspPI	GGNCC	2 cut(s)	70, 76
PstNI	CAGNNNCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SatI	GCNGC	1 cut(s)	352
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	2 cut(s)	70, 76
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	6 cut(s)	41, 49, 68, 74, 106, 218
SetI	ASST	8 cut(s)	31, 69, 136, 162, 219, 285, 316, 389
SexAI	ACCWGGT	1 cut(s)	66
SfaNI	GCATC	1 cut(s)	153
Sfr274I	CTCGAG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	70
SlaI	CTCGAG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	2 cut(s)	355, 379
SsiI	CCGC	4 cut(s)	102, 205, 300, 352
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	6 cut(s)	39, 47, 66, 72, 104, 216
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	63
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	4 cut(s)	195, 231, 252, 375
TasI	AATT	2 cut(s)	355, 379
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	18
TscAI	CASTG	2 cut(s)	97, 295
TseFI	GTSAC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	359
TspRI	CASTG	2 cut(s)	97, 295
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	1 cut(s)	379
XhoI	CTCGAG	1 cut(s)	374
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.