Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018230

Physical Location & Seq

Genomic Coordinates Reverse (-)

26898276 .. 26898596

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018209

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCCCAGCAACACCAGAATCTTGGAAGCTCTGAATGTCCGGGTAACAGGGTCGGGCGAGCAGTACCTGGTCCTGGCTCATGGCTTCGGCACTGACCAGTCCGCCTGGGGTCGCATTCTTCCTTTCTTCAAACCTTACTATCGCATCGTTCTATACGACCTCGTTTGCGCCGGAAGCGTCAACCCCGATTACTTCGATTTCAACAGCAACACCAACCTGGACACCTTCGTTGACGACTTGCTCAACATTCTCGACGCTGTGGGAGTCAAAAAGTGCGCCTACGTTGGCACTGACCAATCCGTGCAAAACCTAGCTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010817 GO:0014070 GO:0016106 GO:0016114 GO:0018130 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1901700 GO:1901701 GO:1902347 GO:1902348 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

107

Amino Acids

11.74

Weight (kDa)

4.57

Isoelectric Point (pI)

25.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018230)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015051 RLG00000018209
rosa_multiflora	Rmu_sc0001997.1_g000009 Rmu_sc0006630.1_g000006 Rmu_sc0007380.1_g000007 Rmu_sc0008099.1_g000007 Rmu_sc0013513.1_g000003 Rmu_sc0016262.1_g000004
rosa_rugosa	Rorug06G0494400
rosa_samantha	Rh7BG435900
rosa_wichuraiana	Rw1G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	130, 202
AjnI	CCWGG	4 cut(s)	66, 72, 104, 216
AluBI	AGCT	2 cut(s)	29, 314
AluI	AGCT	2 cut(s)	29, 314
AlwNI	CAGNNNCTG	1 cut(s)	67
AspLEI	GCGC	2 cut(s)	170, 278
AspS9I	GGNCC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	70
BciT130I	CCWGG	4 cut(s)	68, 74, 106, 218
BcnI	CCSGG	1 cut(s)	41
BfaI	CTAG	1 cut(s)	311
Bme1390I	CCNGG	5 cut(s)	41, 68, 74, 106, 218
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmrFI	CCNGG	5 cut(s)	41, 68, 74, 106, 218
BmsI	GCATC	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	4 cut(s)	68, 74, 106, 218
BseDI	CCNNGG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	40, 171
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	105
Bst2UI	CCWGG	4 cut(s)	68, 74, 106, 218
BstC8I	GCNNGC	1 cut(s)	59
BstHHI	GCGC	2 cut(s)	170, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	4 cut(s)	68, 74, 106, 218
BstSCI	CCNGG	5 cut(s)	39, 66, 72, 104, 216
BstXI	CCANNNNNNTGG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	90, 288
Cac8I	GCNNGC	1 cut(s)	59
CaiI	CAGNNNCTG	1 cut(s)	67
CfoI	GCGC	2 cut(s)	170, 278
Cfr13I	GGNCC	1 cut(s)	70
CseI	GACGC	2 cut(s)	166, 263
CsiI	ACCWGGT	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	4 cut(s)	29, 77, 84, 314
CviKI_1	RGCY	4 cut(s)	29, 77, 84, 314
CviQI	GTAC	1 cut(s)	64
EciI	GGCGGA	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	70
EcoRII	CCWGG	4 cut(s)	66, 72, 104, 216
FaeI	CATG	1 cut(s)	83
FaiI	YATR	2 cut(s)	81, 154
FatI	CATG	1 cut(s)	79
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	2 cut(s)	169, 277
GsaI	CCCAGC	1 cut(s)	9
HapII	CCGG	2 cut(s)	40, 171
HgaI	GACGC	2 cut(s)	166, 263
HhaI	GCGC	2 cut(s)	170, 278
Hin1II	CATG	1 cut(s)	83
Hin6I	GCGC	2 cut(s)	168, 276
HinP1I	GCGC	2 cut(s)	168, 276
HincII	GTYRAC	2 cut(s)	181, 232
HindII	GTYRAC	2 cut(s)	181, 232
HinfI	GANTC	2 cut(s)	18, 264
HpaII	CCGG	2 cut(s)	40, 171
Hpy166II	GTNNAC	2 cut(s)	181, 232
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	2 cut(s)	181, 232
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	83
HspAI	GCGC	2 cut(s)	168, 276
LmnI	GCTCC	1 cut(s)	319
LweI	GCATC	1 cut(s)	153
MabI	ACCWGGT	1 cut(s)	66
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	43
MboII	GAAGA	2 cut(s)	110, 118
MlyI	GAGTC	1 cut(s)	273
MnlI	CCTC	1 cut(s)	170
MspI	CCGG	2 cut(s)	40, 171
MspR9I	CCNGG	5 cut(s)	41, 68, 74, 106, 218
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	4 cut(s)	68, 74, 106, 218
MwoI	GCNNNNNNNGC	1 cut(s)	174
NciI	CCSGG	1 cut(s)	41
NlaIII	CATG	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	18
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp6I	CCWGG	4 cut(s)	66, 72, 104, 216
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	4 cut(s)	66, 72, 104, 216
PspPI	GGNCC	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	5 cut(s)	41, 68, 74, 106, 218
SetI	ASST	9 cut(s)	31, 69, 136, 162, 219, 227, 285, 312, 316
SexAI	ACCWGGT	1 cut(s)	66
SfaNI	GCATC	1 cut(s)	153
SinI	GGWCC	1 cut(s)	70
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	5 cut(s)	39, 66, 72, 104, 216
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	2 cut(s)	195, 252
TfiI	GAWTC	1 cut(s)	18
TscAI	CASTG	2 cut(s)	97, 295
TspGWI	ACGGA	1 cut(s)	289
TspRI	CASTG	2 cut(s)	97, 295
VpaK11BI	GGWCC	1 cut(s)	70
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.