Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007380.1

Orthogroup ID

OG0018230

Physical Location & Seq

Genomic Coordinates Reverse (-)

22876 .. 24491

Gene Structure 1616 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007380.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgcccagcaacaccagaatcttggaagctctgaatgtccgagtaaccgggtcggtagagcagtacctggtcctggcccatgtcttctgcactgaccagtcctcctggggtcgcattcttcttttcttcaaaccttactatcgcatcgttccatacgacctagtttgcgccggaagcgtcaaccccgattacttcgatttcaaccgcaacaccaacctggacgccttcgtcgatgacttgctcaacattctcgacactgtgggagtcaaaaagtgcgcctacgttggcactgaccagtccacgcaaaacccagctccccaaaaacaagatcaaatcttgtccctccgtcaccgcaattgtcaccaaaccaccctccaatcactaacccatcctcggggatttgagatcggcactgcatttatagggatcgggaccgagactggaaatgaatttcgggtcgggtttcgacttgctaaaatagggacaggcctaaacccaaaccgagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010817 GO:0014070 GO:0016106 GO:0016114 GO:0018130 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1901700 GO:1901701 GO:1902347 GO:1902348 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

169

Amino Acids

18.97

Weight (kDa)

6.89

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018230)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015051 RLG00000018209
rosa_multiflora	Rmu_sc0001997.1_g000009 Rmu_sc0006630.1_g000006 Rmu_sc0007380.1_g000007 Rmu_sc0008099.1_g000007 Rmu_sc0013513.1_g000003 Rmu_sc0016262.1_g000004
rosa_rugosa	Rorug06G0494400
rosa_samantha	Rh7BG435900
rosa_wichuraiana	Rw1G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AciI	CCGC	2 cut(s)	205, 352
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	3 cut(s)	73, 393, 394
AgsI	TTSAA	2 cut(s)	130, 202
AjnI	CCWGG	4 cut(s)	66, 72, 104, 216
AluBI	AGCT	2 cut(s)	29, 314
AluI	AGCT	2 cut(s)	29, 314
Alw26I	GTCTC	2 cut(s)	431, 498
AlwI	GGATC	1 cut(s)	434
AlwNI	CAGNNNCTG	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	393
AoxI	GGCC	2 cut(s)	75, 487
ApoI	RAATTY	1 cut(s)	449
AspLEI	GCGC	2 cut(s)	170, 278
AspS9I	GGNCC	3 cut(s)	70, 76, 432
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	341, 353
AvaI	CYCGRG	1 cut(s)	393
AvaII	GGWCC	2 cut(s)	70, 432
BbsI	GAAGAC	1 cut(s)	76
BccI	CCATC	1 cut(s)	396
BciT130I	CCWGG	4 cut(s)	68, 74, 106, 218
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	2 cut(s)	431, 498
BfaI	CTAG	1 cut(s)	161
Bme1390I	CCNGG	5 cut(s)	49, 68, 74, 106, 218
Bme18I	GGWCC	2 cut(s)	70, 432
BmeT110I	CYCGRG	1 cut(s)	393
BmgT120I	GGNCC	3 cut(s)	70, 76, 432
BmiI	GGNNCC	1 cut(s)	433
BmrFI	CCNGG	5 cut(s)	49, 68, 74, 106, 218
BmsI	GCATC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	49
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	105, 392
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 393, 394
Bse1I	ACTGG	3 cut(s)	97, 295, 445
BseBI	CCWGG	4 cut(s)	68, 74, 106, 218
BseDI	CCNNGG	2 cut(s)	105, 392
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	3 cut(s)	73, 393, 394
BseNI	ACTGG	3 cut(s)	97, 295, 445
BseYI	CCCAGC	2 cut(s)	5, 310
BsgI	GTGCAG	1 cut(s)	73
BshFI	GGCC	2 cut(s)	77, 489
BsiHKCI	CYCGRG	1 cut(s)	393
BsiSI	CCGG	2 cut(s)	48, 171
BslFI	GGGAC	3 cut(s)	325, 445, 496
BslI	CCNNNNNNNGG	3 cut(s)	73, 393, 394
BsmAI	GTCTC	2 cut(s)	431, 498
BsmFI	GGGAC	3 cut(s)	325, 445, 496
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	2 cut(s)	77, 489
BsoBI	CYCGRG	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	328, 405, 426
BspACI	CCGC	2 cut(s)	205, 352
BspANI	GGCC	2 cut(s)	77, 489
BspLI	GGNNCC	1 cut(s)	433
BspPI	GGATC	1 cut(s)	434
BsrI	ACTGG	3 cut(s)	97, 295, 445
BssECI	CCNNGG	2 cut(s)	105, 392
BssMI	GATC	3 cut(s)	328, 405, 426
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	4 cut(s)	68, 74, 106, 218
Bst4CI	ACNGT	1 cut(s)	259
BstACI	GRCGYC	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	388
BstHHI	GCGC	2 cut(s)	170, 278
BstKTI	GATC	3 cut(s)	331, 408, 429
BstMAI	GTCTC	2 cut(s)	431, 498
BstMBI	GATC	3 cut(s)	328, 405, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	174
BstNI	CCWGG	4 cut(s)	68, 74, 106, 218
BstSCI	CCNGG	5 cut(s)	47, 66, 72, 104, 216
BstV2I	GAAGAC	1 cut(s)	76
BstXI	CCANNNNNNTGG	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	77, 489
BtsCI	GGATG	1 cut(s)	388
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	4 cut(s)	90, 255, 288, 411
CaiI	CAGNNNCTG	1 cut(s)	67
CfoI	GCGC	2 cut(s)	170, 278
Cfr13I	GGNCC	3 cut(s)	70, 76, 432
CseI	GACGC	2 cut(s)	166, 230
CsiI	ACCWGGT	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	4 cut(s)	29, 77, 314, 489
CviKI_1	RGCY	4 cut(s)	29, 77, 314, 489
CviQI	GTAC	1 cut(s)	64
DpnI	GATC	3 cut(s)	330, 407, 428
DpnII	GATC	3 cut(s)	328, 405, 426
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eco147I	AGGCCT	1 cut(s)	489
Eco47I	GGWCC	2 cut(s)	70, 432
Eco88I	CYCGRG	1 cut(s)	393
EcoRII	CCWGG	4 cut(s)	66, 72, 104, 216
FaeI	CATG	1 cut(s)	83
FaiI	YATR	3 cut(s)	81, 154, 422
FaqI	GGGAC	3 cut(s)	325, 445, 496
FatI	CATG	1 cut(s)	79
FokI	GGATG	1 cut(s)	375
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	2 cut(s)	169, 277
GsaI	CCCAGC	2 cut(s)	9, 314
HaeIII	GGCC	2 cut(s)	77, 489
HapII	CCGG	2 cut(s)	48, 171
HgaI	GACGC	2 cut(s)	166, 230
HhaI	GCGC	2 cut(s)	170, 278
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	83
Hin6I	GCGC	2 cut(s)	168, 276
HinP1I	GCGC	2 cut(s)	168, 276
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	18, 264
HpaII	CCGG	2 cut(s)	48, 171
HphI	GGTGA	2 cut(s)	341, 353
Hpy166II	GTNNAC	2 cut(s)	181, 300
Hpy188I	TCNGA	2 cut(s)	33, 41
Hpy188III	TCNNGA	2 cut(s)	251, 430
Hpy8I	GTNNAC	2 cut(s)	181, 300
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	2 cut(s)	90, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	83
HspAI	GCGC	2 cut(s)	168, 276
Kzo9I	GATC	3 cut(s)	328, 405, 426
LmnI	GCTCC	1 cut(s)	319
LweI	GCATC	1 cut(s)	153
MabI	ACCWGGT	1 cut(s)	66
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	3 cut(s)	43, 347, 359
MalI	GATC	3 cut(s)	330, 407, 428
MboI	GATC	3 cut(s)	328, 405, 426
MboII	GAAGA	3 cut(s)	76, 110, 118
MfeI	CAATTG	1 cut(s)	355
MluCI	AATT	2 cut(s)	355, 449
MlyI	GAGTC	1 cut(s)	273
MnlI	CCTC	4 cut(s)	112, 353, 383, 402
MspI	CCGG	2 cut(s)	48, 171
MspR9I	CCNGG	5 cut(s)	49, 68, 74, 106, 218
MunI	CAATTG	1 cut(s)	355
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	4 cut(s)	68, 74, 106, 218
MwoI	GCNNNNNNNGC	1 cut(s)	174
NciI	CCSGG	1 cut(s)	49
NdeII	GATC	3 cut(s)	328, 405, 426
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	1 cut(s)	433
NmuCI	GTSAC	2 cut(s)	347, 359
PceI	AGGCCT	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 228
PctI	GAATGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	18
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp6I	CCWGG	4 cut(s)	66, 72, 104, 216
PspFI	CCCAGC	2 cut(s)	5, 310
PspGI	CCWGG	4 cut(s)	66, 72, 104, 216
PspN4I	GGNNCC	1 cut(s)	433
PspPI	GGNCC	3 cut(s)	70, 76, 432
PstNI	CAGNNNCTG	1 cut(s)	67
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
Sau3AI	GATC	3 cut(s)	328, 405, 426
Sau96I	GGNCC	3 cut(s)	70, 76, 432
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	5 cut(s)	49, 68, 74, 106, 218
SetI	ASST	7 cut(s)	31, 69, 136, 162, 219, 285, 316
SexAI	ACCWGGT	1 cut(s)	66
SfaNI	GCATC	1 cut(s)	153
SinI	GGWCC	2 cut(s)	70, 432
Sse9I	AATT	2 cut(s)	355, 449
SseBI	AGGCCT	1 cut(s)	489
SsiI	CCGC	2 cut(s)	205, 352
SspMI	CTAG	1 cut(s)	161
StuI	AGGCCT	1 cut(s)	489
StyD4I	CCNGG	5 cut(s)	47, 66, 72, 104, 216
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	4 cut(s)	195, 231, 252, 466
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	2 cut(s)	355, 449
TfiI	GAWTC	1 cut(s)	18
TscAI	CASTG	4 cut(s)	97, 262, 295, 418
TseFI	GTSAC	2 cut(s)	347, 359
Tsp45I	GTSAC	2 cut(s)	347, 359
TspDTI	ATGAA	1 cut(s)	462
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	4 cut(s)	97, 262, 295, 418
VpaK11BI	GGWCC	2 cut(s)	70, 432
XapI	RAATTY	1 cut(s)	449
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.