Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0018230

Physical Location & Seq

Genomic Coordinates Reverse (-)

50038946 .. 50039942

Gene Structure 997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG435900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCCCAGCAACACCAGAATCTTGGAAGCTTTGAATGTCCGGGTAACCGGGTCGGGCGAGCAGTACTTGGTCCTGGCCCATGGCTTCGGCACTGACCAGTCCGCCTGGGGTCGCATTCTTCCTTTCTTCAAACCTTACTATCGCATCGTTCTATACGACCTCGTTTGCGCCGGAAGCGTCAACCCCGATTACTTCGATTTCAACCGCAACACCAACCTGGACGCCTTCGTCAACGACTTGCTCAACATTCTAGACGTTGTGGGAGTCAAAAAGTGCGCAGTCCGCGCAAAACCCAGCTCCCCAAAAACAAGATCAAATCCTGTCCCTCCGTCGCCGCAATTTTCACCGAACCACCCTCCAATCACCGACCCACCCTCGGGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010817 GO:0014070 GO:0016106 GO:0016114 GO:0018130 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901576 GO:1901600 GO:1901601 GO:1901700 GO:1901701 GO:1902347 GO:1902348 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

128

Amino Acids

14.1

Weight (kDa)

8.64

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018230)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015051 RLG00000018209
rosa_multiflora	Rmu_sc0001997.1_g000009 Rmu_sc0006630.1_g000006 Rmu_sc0007380.1_g000007 Rmu_sc0008099.1_g000007 Rmu_sc0013513.1_g000003 Rmu_sc0016262.1_g000004
rosa_rugosa	Rorug06G0494400
rosa_samantha	Rh7BG435900
rosa_wichuraiana	Rw1G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
Acc16I	TGCGCA	1 cut(s)	277
AccII	CGCG	1 cut(s)	285
AciI	CCGC	4 cut(s)	102, 205, 283, 335
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	376, 377
AgsI	TTSAA	3 cut(s)	34, 130, 202
AjnI	CCWGG	3 cut(s)	72, 104, 216
AluBI	AGCT	2 cut(s)	29, 297
AluI	AGCT	2 cut(s)	29, 297
Ama87I	CYCGRG	1 cut(s)	376
AoxI	GGCC	1 cut(s)	75
AspLEI	GCGC	3 cut(s)	170, 278, 287
AspS9I	GGNCC	2 cut(s)	70, 76
AsuC2I	CCSGG	2 cut(s)	41, 49
AsuHPI	GGTGA	2 cut(s)	336, 355
AvaI	CYCGRG	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	70
BciT130I	CCWGG	3 cut(s)	74, 106, 218
BcnI	CCSGG	2 cut(s)	41, 49
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	336
BmcAI	AGTACT	1 cut(s)	65
Bme1390I	CCNGG	5 cut(s)	41, 49, 74, 106, 218
Bme18I	GGWCC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	376
BmgT120I	GGNCC	2 cut(s)	70, 76
BmrFI	CCNGG	5 cut(s)	41, 49, 74, 106, 218
BmsI	GCATC	1 cut(s)	153
BpuMI	CCSGG	2 cut(s)	41, 49
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	79, 105, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 377
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	3 cut(s)	74, 106, 218
BseDI	CCNNGG	3 cut(s)	79, 105, 375
BseLI	CCNNNNNNNGG	2 cut(s)	376, 377
BseNI	ACTGG	1 cut(s)	97
BseYI	CCCAGC	2 cut(s)	5, 293
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	376
BsiSI	CCGG	3 cut(s)	40, 48, 171
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	376, 377
BsmFI	GGGAC	1 cut(s)	308
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	311
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	4 cut(s)	102, 205, 283, 335
BspANI	GGCC	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	79, 105, 375
BssMI	GATC	1 cut(s)	311
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	3 cut(s)	74, 106, 218
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	79
BstEII	GGTNACC	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	285
BstHHI	GCGC	3 cut(s)	170, 278, 287
BstKTI	GATC	1 cut(s)	314
BstMBI	GATC	1 cut(s)	311
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 282, 284
BstNI	CCWGG	3 cut(s)	74, 106, 218
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	5 cut(s)	39, 47, 72, 104, 216
BstUI	CGCG	1 cut(s)	285
BstXI	CCANNNNNNTGG	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	59
CfoI	GCGC	3 cut(s)	170, 278, 287
Cfr13I	GGNCC	2 cut(s)	70, 76
CseI	GACGC	2 cut(s)	166, 230
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	4 cut(s)	29, 77, 84, 297
CviKI_1	RGCY	4 cut(s)	29, 77, 84, 297
CviQI	GTAC	1 cut(s)	64
DpnI	GATC	1 cut(s)	313
DpnII	GATC	1 cut(s)	311
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EciI	GGCGGA	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	376
Eco91I	GGTNACC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	72, 104, 216
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	1 cut(s)	83
FaiI	YATR	2 cut(s)	81, 154
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	335
Fsp4HI	GCNGC	1 cut(s)	335
FspBI	CTAG	1 cut(s)	251
FspI	TGCGCA	1 cut(s)	277
GlaI	GCGC	3 cut(s)	169, 277, 286
GluI	GCNGC	1 cut(s)	335
GsaI	CCCAGC	2 cut(s)	9, 297
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	3 cut(s)	40, 48, 171
HgaI	GACGC	2 cut(s)	166, 230
HhaI	GCGC	3 cut(s)	170, 278, 287
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	83
Hin6I	GCGC	3 cut(s)	168, 276, 285
HinP1I	GCGC	3 cut(s)	168, 276, 285
HincII	GTYRAC	2 cut(s)	181, 232
HindII	GTYRAC	2 cut(s)	181, 232
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	2 cut(s)	18, 264
HpaII	CCGG	3 cut(s)	40, 48, 171
HphI	GGTGA	2 cut(s)	336, 355
Hpy166II	GTNNAC	2 cut(s)	181, 232
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	2 cut(s)	181, 232
Hpy99I	CGWCG	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 282, 284
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	83
HspAI	GCGC	3 cut(s)	168, 276, 285
Kzo9I	GATC	1 cut(s)	311
LmnI	GCTCC	1 cut(s)	302
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	313
MboI	GATC	1 cut(s)	311
MboII	GAAGA	2 cut(s)	110, 118
MluCI	AATT	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	273
MnlI	CCTC	4 cut(s)	170, 336, 366, 385
MspI	CCGG	3 cut(s)	40, 48, 171
MspR9I	CCNGG	5 cut(s)	41, 49, 74, 106, 218
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	3 cut(s)	74, 106, 218
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	174, 282, 284
NciI	CCSGG	2 cut(s)	41, 49
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	1 cut(s)	311
NlaIII	CATG	1 cut(s)	83
NsbI	TGCGCA	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	336
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp6I	CCWGG	3 cut(s)	72, 104, 216
PspEI	GGTNACC	1 cut(s)	43
PspFI	CCCAGC	2 cut(s)	5, 293
PspGI	CCWGG	3 cut(s)	72, 104, 216
PspPI	GGNCC	2 cut(s)	70, 76
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	1 cut(s)	311
Sau96I	GGNCC	2 cut(s)	70, 76
ScaI	AGTACT	1 cut(s)	65
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	5 cut(s)	41, 49, 74, 106, 218
SetI	ASST	6 cut(s)	31, 136, 162, 219, 258, 299
SfaNI	GCATC	1 cut(s)	153
SinI	GGWCC	1 cut(s)	70
Sse9I	AATT	1 cut(s)	338
SsiI	CCGC	4 cut(s)	102, 205, 283, 335
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	5 cut(s)	39, 47, 72, 104, 216
StyI	CCWWGG	1 cut(s)	79
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	195
TasI	AATT	1 cut(s)	338
TatI	WGTACW	1 cut(s)	63
TauI	GCSGC	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	18
TscAI	CASTG	1 cut(s)	97
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	70
XbaI	TCTAGA	1 cut(s)	250
XspI	CTAG	1 cut(s)	251
ZrmI	AGTACT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.