Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004955

Physical Location & Seq

Genomic Coordinates Forward (+)

1928961 .. 1933296

Gene Structure 4336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015861

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2931 bp

ATGTCGCAACAGGGTGATATGGTGGTGGTTCCGATTTGGTGGCGCTCAGGATGGCTGCTGACAGTCATTGTCGAGGAGACGGCAGTTTGTGTTGGGCCTATGTGGTTGGGCCCCTGTTGGAGGGCTGCTAGGTGTTTGGTGTCAAATTTCTGTCTCTTTCTTATCCCTATTAGTCATCTTTCATCAAACTCATCATCATCATCATCATCTTCTTCTTCTTCCCCCAACCTCTCACACCTGGCCTTTATTTTCTCGCCCCTTTTCGTCCCTCGGTACGCTATTACAGAATCCCTAGAAAACTTTGCTGGTTCAAGTCCCCATTCATTCTATTCTAGGGTTTCAGATTCCCATGGCCTTGATTCTCCCTCATCTTCAAACCTTATAGTCCCTGCAGATTCACCCAAGTTTTCTTCATTCCTGGTTAGTGAAATCCCACATAGAATGGCTAAGAAACTATACCAATTTCCCCCAATACGGATGAAGGGTTTTAGAGATTGGATTCTTTCTCAGTTAGTATCCAAGTCTGTGGTCTCGTCTCGGCCGTTATCAGGGAGTGATAGTTTCTTCAGTGTGGAGCGTTCGACTAATGAAGTGCTTGATGACCAAGGTGCTTCTGATTCTACCACTTTGGTAGCACCCCCCGTCCTTGATGAAACTTCCAACTCGTTGAATAGGGATCAGGAAAATCAGTCTAGTCCTTCCCCGCAGGATGTTGAGGTTGAAAATTCTGATCAATCTCATAGTGGGTCTGATATGAAAAAGAAGGATCCTTTGATGAAAATTGATGATCTGCAAGCCAAGTTCTTGCTACTCCTCCGGCAGCTTGGTCTATCAAAAGATAACCTCATGGTGGCAAAGGTTCTTTATCGAATTCACCTAGCAACTGTGATACGAGCAGAAAAGTCGGATTTGAAAGGAGTTAATCTCAGAGGTGATGGAAACAGAGTGATGACAGCAGAACAAGCTGGCCCGCCTGATTTGGATTTTTCTCTGAGAATCCTTGTCCTTGGGAAAACAGGAGTGGGCAAGAGTGCTACAATTAATTCTATATTTGATCAAACAAAAGCGGTAACCAATGCTTTTCGACCTGGTACAAAGCACGTTCGGGAGGTTGTGGGAACTGTAAATGGGATTAGAGTGACTGTCATTGATACCCCTGGTTTTTTGCCTGGGGTATGTATAGGTAACTTGCGCAGAAATAAGAAGATTATGCTCTCAGTGAAGAGATTTATTAGAAAAAGTCCACCTGACATTGTTTTGTTTTTCGAACGCCTTGATCTCATTGATACAAGCTATAGTGATCTTCCCTTATTGAAGCTAATAACTGAAGTTTTTGGGCGTGCAATTTGGTTTAGCACCATTCTTGTTATGACTCATTCTTCCTCAGCTCTTCCGGATGGACCAGACGGGTACCCTGTCAGCTATGAAGTACATGCGAGGCGAAGCACAGATATGGTGCAGCACTATATACATCAGGCAGTGTTGGACTCCAGACTTGAAAACCCAGTGCTTTTGGTTGAGAATCATTCTCATTGCAAGACAAATATCATGGGGGAAAAGATACTTCCAAATGGTCAGGTTTGGAAATCTCAGTTTTTGTTACTATGCATTTGTACAAAAGTTCTAGGTGATGTAAATTCCCTCTTGAAATTTAACGATAGCATTGAACTGGGGCCCCCACCTGCTACCTACGTGCCGTCTCTTCCCCATCTCCTTTCATCTCTTCTACGCCATCCTATCGTTCCAAGTGGAGTGGAAAATGAAGTTGGTGAGAGCTTGTTTTCAGACATGGAGGAAGAAGATGAGTATGATCAATTACCAGCAATCCGAATCCTGACAAAAGCCCAGTTTGAGAGGCTGACAAAATCACAGAAAACAGACTATCTCAATGAATTGGATTATCGAGAGACCCTTTATCTGAAGAAACAGTTGAAAGAAGAGTACTGTAGGCAGATGGAAAGTAAGCTTTCCAATGAAAAAAATTCAGCAAGTGATGATAACTCTGAGAGTCAGCAGGCCGCCCCAGAGGAGGCTGTTTTATTACCAGATATGGAGATCCCTCTCAGTTTTGGCTCTAATCACCCTGCACACAGATATCGTTGCCTTGTTGCGAGTGATCAGTGGATTGTGAGACCTGTTCTTGATCCCCAGGGATGGGATAATGATGTGGGCTTCGATGGAATAAGCTTGGAATCAGCTGCACATATAAATAGGGAACTCTTTACCTCTGTTATGGGGCAGATAAGCAAGGACAAACAAGATTTTAGCATTCAGTCAGAGTGCGCTGCAGCTTACACAAACTCCAGGGGAACTGTACATTCTGTAGGTCTTGATGTTCAATCTGCCGGTAAAGATACCATCTATACTTTTCACAGCAACAAGAAGCGAGCAAATCAGAAGAAGCTGTGGGAGGATGTTTTTGATGGTGGAATCTCTTTGACATCTTTTGGGAACAAGTATTACTTTGGTGCCAAGCTTGAAGAAACTGTTTCAATTGGGAAGAGGTTGAAGTTTCTGATGAACGCGGGCCAAATGATGAATGCGAGCAAATTGATTGTGGATCGTGAACAAGTTGCATATGGCGGCTCTGTGGAAGCTACTTTACGGGGTAGAGACTACCCTGTGAGAAATGACTTTGTCACCCTGACAATGTCTATCCTTTCTTTCAATAAAGAGATGGTGTTGGGTGGAAACGTACGGTCTGAGTCCCGGCTGGGCAGAAATTTGAAGGTATCGGTCAATGCTAATCTAAATAGCCGCAGGATGGGGAAGTTGAGCATAAAGACAAGCAGCAGTGATCATTTGCCGTTTGGTCTGGTTGCCGCTTTCACAATTTTCTGGACCCTCTTACGGAGAAAGGGCATCGCAAATTCAAGTAATGAATCAGGGGAGACGGAAGTAGGGGAGGCTGAATCAGGGGAGACTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0045036 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

977

Amino Acids

108.25

Weight (kDa)

6.37

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AIG1	PF04548	331 - 464	1.1e-18	AIG1 family
MMR_HSR1	PF01926	332 - 422	8.9e-09	50S ribosome-binding GTPase
TOC159_MAD	PF11886	677 - 952	1.7e-101	Translocase of chloroplast 159/132, membrane anchor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20300 AT5G20300 AT5G20300 AT5G20300 AT5G20300
fragaria_vesca	FvH4_1g02420 FvH4_1g02420 FvH4_1g02420 FvH4_1g02420 FvH4_1g02420 FvH4_1g02420 FvH4_1g02420 FvH4_1g02420
malus_domestica	MD02G1020900.v1.1 MD15G1164100.v1.1
prunus_persica	Prupe.7G250500_v2.0.a1 Prupe.7G250500_v2.0.a1
pyrus_communis	pycom02g01840 pycom15g14720
rosa_chinensis	RchiOBHm_Chr2g0087381
rosa_laevigata	RLG00000015861
rosa_multiflora	Rmu_sc0012811.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153590
rosa_rugosa	Rorug01G0474600 Rorug01G0474700
rosa_samantha	Rh2AG028200 Rh2BG028100 Rh2CG028400 Rh2DG028200
rosa_wichuraiana	Rw2G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1690
Acc16I	TGCGCA	1 cut(s)	1193
Acc36I	ACCTGC	1 cut(s)	1690
Acc65I	GGTACC	1 cut(s)	1410
AccB1I	GGYRCC	2 cut(s)	1410, 2468
AccII	CGCG	1 cut(s)	2525
AccIII	TCCGGA	1 cut(s)	1393
AciI	CCGC	8 cut(s)	704, 971, 1067, 2019, 2525, 2583, 2758, 2823
AclWI	GGATC	6 cut(s)	684, 761, 774, 2050, 2138, 2568
AcoI	YGGCCR	1 cut(s)	539
AcsI	RAATTY	8 cut(s)	145, 724, 870, 1636, 1649, 1981, 2722, 2869
AcuI	CTGAAG	3 cut(s)	550, 1347, 1940
AfaI	GTAC	8 cut(s)	275, 1093, 1412, 1431, 1615, 1943, 2316, 2697
AfiI	CCNNNNNNNGG	9 cut(s)	120, 474, 548, 850, 2029, 2154, 2155, 2764, 2850
AjnI	CCWGG	7 cut(s)	237, 417, 1087, 1156, 1168, 2148, 2303
AjuI	GAANNNNNNNTTGG	2 cut(s)	1749, 1781
AlwI	GGATC	6 cut(s)	684, 761, 774, 2050, 2138, 2568
Aor13HI	TCCGGA	1 cut(s)	1393
AoxI	GGCC	9 cut(s)	95, 109, 240, 352, 539, 967, 1673, 2016, 2527
ApaI	GGGCCC	2 cut(s)	113, 1677
ApeKI	GCWGC	8 cut(s)	55, 125, 820, 1459, 2198, 2285, 2288, 2790
ApoI	RAATTY	8 cut(s)	145, 724, 870, 1636, 1649, 1981, 2722, 2869
AseI	ATTAAT	1 cut(s)	1041
Asp718I	GGTACC	1 cut(s)	1410
AspLEI	GCGC	3 cut(s)	45, 1194, 2285
AspS9I	GGNCC	9 cut(s)	95, 109, 110, 968, 1400, 1673, 1674, 2527, 2841
AsuC2I	CCSGG	1 cut(s)	2710
AsuHPI	GGTGA	8 cut(s)	26, 390, 866, 944, 1640, 1781, 2072, 2632
AsuII	TTCGAA	1 cut(s)	1266
AvaII	GGWCC	2 cut(s)	1400, 2841
BaeGI	GKGCMC	2 cut(s)	113, 1677
BamHI	GGATCC	1 cut(s)	766
BanI	GGYRCC	2 cut(s)	1410, 2468
BanII	GRGCYC	2 cut(s)	113, 1677
BarI	GAAGNNNNNNTAC	2 cut(s)	2586, 2618
BbvCI	CCTCAGC	1 cut(s)	1384
BbvI	GCAGC	8 cut(s)	42, 112, 832, 1471, 2185, 2272, 2300, 2802
BceAI	ACGGC	4 cut(s)	96, 526, 1681, 2791
BcgI	CGANNNNNNTGC	2 cut(s)	885, 919
BciT130I	CCWGG	7 cut(s)	239, 419, 1089, 1158, 1170, 2150, 2305
BciVI	GTATCC	1 cut(s)	526
BclI	TGATCA	5 cut(s)	730, 1054, 1810, 2116, 2797
BcnI	CCSGG	1 cut(s)	2710
BfaI	CTAG	6 cut(s)	129, 293, 333, 693, 878, 1625
BfmI	CTRYAG	5 cut(s)	390, 1294, 1945, 2286, 2322
BfoI	RGCGCY	1 cut(s)	46
BfuAI	ACCTGC	1 cut(s)	1690
BfuI	GTATCC	1 cut(s)	526
BmcAI	AGTACT	1 cut(s)	1943
Bme1390I	CCNGG	8 cut(s)	239, 419, 1089, 1158, 1170, 2150, 2305, 2710
Bme18I	GGWCC	2 cut(s)	1400, 2841
BmgT120I	GGNCC	9 cut(s)	95, 109, 110, 968, 1400, 1673, 1674, 2527, 2841
BmrFI	CCNGG	8 cut(s)	239, 419, 1089, 1158, 1170, 2150, 2305, 2710
BmrI	ACTGGG	3 cut(s)	1499, 1679, 1840
BmsI	GCATC	1 cut(s)	2871
BmuI	ACTGGG	3 cut(s)	1499, 1679, 1840
BplI	GAGNNNNNCTC	2 cut(s)	909, 941
BpmI	CTGGAG	2 cut(s)	1474, 2287
Bpu10I	CCTNAGC	2 cut(s)	46, 1384
Bpu14I	TTCGAA	1 cut(s)	1266
BpuMI	CCSGG	1 cut(s)	2710
BsaAI	YACGTR	1 cut(s)	1693
BsaI	GGTCTC	3 cut(s)	535, 1901, 2125
BsaJI	CCNNGG	9 cut(s)	269, 349, 604, 1006, 1156, 1169, 2148, 2149, 2304
BsaWI	WCCGGW	1 cut(s)	1393
BsaXI	ACNNNNNCTCC	4 cut(s)	544, 574, 2285, 2315
Bsc4I	CCNNNNNNNGG	9 cut(s)	120, 474, 548, 850, 2029, 2154, 2155, 2764, 2850
Bse118I	RCCGGY	1 cut(s)	2345
Bse1I	ACTGG	4 cut(s)	1505, 1674, 1846, 2929
Bse3DI	GCAATG	1 cut(s)	1531
BseAI	TCCGGA	1 cut(s)	1393
BseBI	CCWGG	7 cut(s)	239, 419, 1089, 1158, 1170, 2150, 2305
BseDI	CCNNGG	9 cut(s)	269, 349, 604, 1006, 1156, 1169, 2148, 2149, 2304
BseGI	GGATG	8 cut(s)	56, 483, 715, 1402, 1732, 2159, 2419, 2769
BseLI	CCNNNNNNNGG	9 cut(s)	120, 474, 548, 850, 2029, 2154, 2155, 2764, 2850
BseMI	GCAATG	1 cut(s)	1531
BseNI	ACTGG	4 cut(s)	1505, 1674, 1846, 2929
BseRI	GAGGAG	3 cut(s)	89, 803, 2042
BseSI	GKGCMC	2 cut(s)	113, 1677
BseX3I	CGGCCG	1 cut(s)	539
BseXI	GCAGC	8 cut(s)	42, 112, 832, 1471, 2185, 2272, 2300, 2802
BseYI	CCCAGC	1 cut(s)	2713
BsgI	GTGCAG	3 cut(s)	1478, 2070, 2184
Bsh1236I	CGCG	1 cut(s)	2525
Bsh1285I	CGRYCG	1 cut(s)	542
BshFI	GGCC	9 cut(s)	97, 111, 242, 354, 541, 969, 1675, 2018, 2529
BshNI	GGYRCC	2 cut(s)	1410, 2468
BsiEI	CGRYCG	1 cut(s)	542
BsiSI	CCGG	4 cut(s)	817, 1394, 2346, 2710
BsiWI	CGTACG	1 cut(s)	2695
BslFI	GGGAC	4 cut(s)	251, 300, 371, 2692
BslI	CCNNNNNNNGG	9 cut(s)	120, 474, 548, 850, 2029, 2154, 2155, 2764, 2850
BsmBI	CGTCTC	4 cut(s)	71, 540, 1704, 2885
BsmFI	GGGAC	4 cut(s)	251, 300, 371, 2692
BsmI	GAATGC	2 cut(s)	2268, 2545
BsnI	GGCC	9 cut(s)	97, 111, 242, 354, 541, 969, 1675, 2018, 2529
Bso31I	GGTCTC	3 cut(s)	535, 1901, 2125
Bsp119I	TTCGAA	1 cut(s)	1266
Bsp120I	GGGCCC	2 cut(s)	109, 1673
Bsp1286I	GDGCHC	2 cut(s)	113, 1677
Bsp13I	TCCGGA	1 cut(s)	1393
Bsp1407I	TGTACA	2 cut(s)	1613, 2314
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	8 cut(s)	704, 971, 1067, 2019, 2525, 2583, 2758, 2823
BspANI	GGCC	9 cut(s)	97, 111, 242, 354, 541, 969, 1675, 2018, 2529
BspEI	TCCGGA	1 cut(s)	1393
BspFNI	CGCG	1 cut(s)	2525
BspMAI	CTGCAG	2 cut(s)	394, 2290
BspMI	ACCTGC	1 cut(s)	1690
BspPI	GGATC	6 cut(s)	684, 761, 774, 2050, 2138, 2568
BspQI	GCTCTTC	1 cut(s)	1395
BspT104I	TTCGAA	1 cut(s)	1266
BspT107I	GGYRCC	2 cut(s)	1410, 2468
BspTNI	GGTCTC	3 cut(s)	535, 1901, 2125
BsrDI	GCAATG	1 cut(s)	1531
BsrFI	RCCGGY	1 cut(s)	2345
BsrGI	TGTACA	2 cut(s)	1613, 2314
BsrI	ACTGG	4 cut(s)	1505, 1674, 1846, 2929
BssAI	RCCGGY	1 cut(s)	2345
BssECI	CCNNGG	9 cut(s)	269, 349, 604, 1006, 1156, 1169, 2148, 2149, 2304
BssT1I	CCWWGG	3 cut(s)	349, 604, 1006
Bst2UI	CCWGG	7 cut(s)	239, 419, 1089, 1158, 1170, 2150, 2305
Bst4CI	ACNGT	9 cut(s)	64, 886, 1123, 1144, 1929, 1946, 2314, 2488, 2700
Bst6I	CTCTTC	6 cut(s)	1217, 1395, 1707, 1728, 1932, 2495
BstAUI	TGTACA	2 cut(s)	1613, 2314
BstBAI	YACGTR	1 cut(s)	1693
BstBI	TTCGAA	1 cut(s)	1266
BstC8I	GCNNGC	8 cut(s)	795, 967, 971, 1341, 2016, 2388, 2527, 2545
BstDSI	CCRYGG	1 cut(s)	349
BstEII	GGTNACC	1 cut(s)	1069
BstENI	CCTNNNNNAGG	1 cut(s)	118
BstF5I	GGATG	8 cut(s)	56, 483, 715, 1402, 1732, 2159, 2419, 2769
BstFNI	CGCG	1 cut(s)	2525
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	3 cut(s)	45, 1194, 2285
BstMCI	CGRYCG	1 cut(s)	542
BstMWI	GCNNNNNNNGC	1 cut(s)	962
BstNI	CCWGG	7 cut(s)	239, 419, 1089, 1158, 1170, 2150, 2305
BstNSI	RCATGY	1 cut(s)	1436
BstPI	GGTNACC	1 cut(s)	1069
BstSCI	CCNGG	8 cut(s)	237, 417, 1087, 1156, 1168, 2148, 2303, 2708
BstSFI	CTRYAG	5 cut(s)	390, 1294, 1945, 2286, 2322
BstSLI	GKGCMC	2 cut(s)	113, 1677
BstUI	CGCG	1 cut(s)	2525
BstV1I	GCAGC	8 cut(s)	42, 112, 832, 1471, 2185, 2272, 2300, 2802
BstX2I	RGATCY	2 cut(s)	766, 2055
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	2 cut(s)	766, 2055
BstZI	CGGCCG	1 cut(s)	539
BsuI	GTATCC	1 cut(s)	526
BsuRI	GGCC	9 cut(s)	97, 111, 242, 354, 541, 969, 1675, 2018, 2529
BtgI	CCRYGG	1 cut(s)	349
BtgZI	GCGATG	1 cut(s)	2848
BtsCI	GGATG	8 cut(s)	56, 483, 715, 1402, 1732, 2159, 2419, 2769
BtsI	GCAGTG	2 cut(s)	1485, 2800
BtsIMutI	CAGTG	6 cut(s)	574, 1224, 1485, 1512, 2126, 2800
BveI	ACCTGC	1 cut(s)	1690
Cac8I	GCNNGC	8 cut(s)	795, 967, 971, 1341, 2016, 2388, 2527, 2545
CfoI	GCGC	3 cut(s)	45, 1194, 2285
Cfr10I	RCCGGY	1 cut(s)	2345
Cfr13I	GGNCC	9 cut(s)	95, 109, 110, 968, 1400, 1673, 1674, 2527, 2841
CsiI	ACCWGGT	1 cut(s)	1087
Csp6I	GTAC	8 cut(s)	274, 1092, 1411, 1430, 1614, 1942, 2315, 2696
CspCI	CAANNNNNGTGG	2 cut(s)	1734, 1769
CviAII	CATG	5 cut(s)	350, 847, 1433, 1549, 1789
CviQI	GTAC	8 cut(s)	274, 1092, 1411, 1430, 1614, 1942, 2315, 2696
EaeI	YGGCCR	1 cut(s)	539
EagI	CGGCCG	1 cut(s)	539
Eam1104I	CTCTTC	6 cut(s)	1217, 1395, 1707, 1728, 1932, 2495
EarI	CTCTTC	6 cut(s)	1217, 1395, 1707, 1728, 1932, 2495
EclXI	CGGCCG	1 cut(s)	539
Eco130I	CCWWGG	3 cut(s)	349, 604, 1006
Eco24I	GRGCYC	2 cut(s)	113, 1677
Eco31I	GGTCTC	3 cut(s)	535, 1901, 2125
Eco32I	GATATC	1 cut(s)	2096
Eco47I	GGWCC	2 cut(s)	1400, 2841
Eco52I	CGGCCG	1 cut(s)	539
Eco57I	CTGAAG	3 cut(s)	550, 1347, 1940
Eco91I	GGTNACC	1 cut(s)	1069
EcoNI	CCTNNNNNAGG	1 cut(s)	118
EcoO109I	RGGNCCY	3 cut(s)	110, 1673, 1674
EcoO65I	GGTNACC	1 cut(s)	1069
EcoRI	GAATTC	1 cut(s)	870
EcoRII	CCWGG	7 cut(s)	237, 417, 1087, 1156, 1168, 2148, 2303
EcoRV	GATATC	1 cut(s)	2096
EcoT14I	CCWWGG	3 cut(s)	349, 604, 1006
EcoT22I	ATGCAT	1 cut(s)	1610
EcoT38I	GRGCYC	2 cut(s)	113, 1677
ErhI	CCWWGG	3 cut(s)	349, 604, 1006
Esp3I	CGTCTC	4 cut(s)	71, 540, 1704, 2885
FaeI	CATG	5 cut(s)	353, 850, 1436, 1552, 1792
FalI	AAGNNNNNCTT	2 cut(s)	2447, 2479
FaqI	GGGAC	4 cut(s)	251, 300, 371, 2692
FatI	CATG	5 cut(s)	349, 846, 1432, 1548, 1788
FauI	CCCGC	3 cut(s)	711, 978, 2518
FauNDI	CATATG	1 cut(s)	2578
FbaI	TGATCA	5 cut(s)	730, 1054, 1810, 2116, 2797
FokI	GGATG	8 cut(s)	63, 490, 722, 1409, 1719, 2166, 2426, 2776
FriOI	GRGCYC	2 cut(s)	113, 1677
FspBI	CTAG	6 cut(s)	129, 293, 333, 693, 878, 1625
FspI	TGCGCA	1 cut(s)	1193
GlaI	GCGC	3 cut(s)	44, 1193, 2284
GsaI	CCCAGC	1 cut(s)	2717
GsuI	CTGGAG	2 cut(s)	1474, 2287
HaeII	RGCGCY	1 cut(s)	46
HaeIII	GGCC	9 cut(s)	97, 111, 242, 354, 541, 969, 1675, 2018, 2529
HapII	CCGG	4 cut(s)	817, 1394, 2346, 2710
HhaI	GCGC	3 cut(s)	45, 1194, 2285
Hin1II	CATG	5 cut(s)	353, 850, 1436, 1552, 1792
Hin6I	GCGC	3 cut(s)	43, 1192, 2283
HinP1I	GCGC	3 cut(s)	43, 1192, 2283
HindIII	AAGCTT	3 cut(s)	1964, 2185, 2474
HpaII	CCGG	4 cut(s)	817, 1394, 2346, 2710
HphI	GGTGA	8 cut(s)	26, 390, 866, 944, 1640, 1781, 2072, 2632
Hpy166II	GTNNAC	2 cut(s)	1244, 2567
Hpy8I	GTNNAC	2 cut(s)	1244, 2567
HpyAV	CCTTC	4 cut(s)	475, 708, 757, 2722
HpyCH4III	ACNGT	9 cut(s)	64, 886, 1123, 1144, 1929, 1946, 2314, 2488, 2700
HpyCH4IV	ACGT	3 cut(s)	1101, 1692, 2694
HpyF10VI	GCNNNNNNNGC	1 cut(s)	962
HpySE526I	ACGT	3 cut(s)	1101, 1692, 2694
Hsp92II	CATG	5 cut(s)	353, 850, 1436, 1552, 1792
HspAI	GCGC	3 cut(s)	43, 1192, 2283
Kpn2I	TCCGGA	1 cut(s)	1393
KpnI	GGTACC	1 cut(s)	1414
Ksp22I	TGATCA	5 cut(s)	730, 1054, 1810, 2116, 2797
LguI	GCTCTTC	1 cut(s)	1395
LmnI	GCTCC	1 cut(s)	574
Lsp1109I	GCAGC	8 cut(s)	42, 112, 832, 1471, 2185, 2272, 2300, 2802
LweI	GCATC	1 cut(s)	2871
MabI	ACCWGGT	1 cut(s)	1087
MaeI	CTAG	6 cut(s)	129, 293, 333, 693, 878, 1625
MaeII	ACGT	3 cut(s)	1101, 1692, 2694
MaeIII	GTNAC	5 cut(s)	1069, 1138, 1184, 1599, 2638
MfeI	CAATTG	1 cut(s)	2493
MflI	RGATCY	2 cut(s)	766, 2055
MhlI	GDGCHC	2 cut(s)	113, 1677
MlyI	GAGTC	4 cut(s)	1366, 1481, 2017, 2714
MmeI	TCCRAC	4 cut(s)	98, 684, 885, 1464
Mph1103I	ATGCAT	1 cut(s)	1610
MroI	TCCGGA	1 cut(s)	1393
MseI	TTAA	3 cut(s)	921, 1041, 1653
MslI	CAYNNNNRTG	1 cut(s)	1451
MspA1I	CMGCKG	1 cut(s)	2198
MspI	CCGG	4 cut(s)	817, 1394, 2346, 2710
MspR9I	CCNGG	8 cut(s)	239, 419, 1089, 1158, 1170, 2150, 2305, 2710
MunI	CAATTG	1 cut(s)	2493
Mva1269I	GAATGC	2 cut(s)	2268, 2545
MvaI	CCWGG	7 cut(s)	239, 419, 1089, 1158, 1170, 2150, 2305
MvnI	CGCG	1 cut(s)	2525
MwoI	GCNNNNNNNGC	1 cut(s)	962
NciI	CCSGG	1 cut(s)	2710
NcoI	CCATGG	1 cut(s)	349
NdeI	CATATG	1 cut(s)	2578
NlaIII	CATG	5 cut(s)	353, 850, 1436, 1552, 1792
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	2 cut(s)	1138, 2638
NsbI	TGCGCA	1 cut(s)	1193
NsiI	ATGCAT	1 cut(s)	1610
NspI	RCATGY	1 cut(s)	1436
NspV	TTCGAA	1 cut(s)	1266
PaqCI	CACCTGC	1 cut(s)	1690
PasI	CCCWGGG	1 cut(s)	2149
PciSI	GCTCTTC	1 cut(s)	1395
PcsI	WCGNNNNNNNCGW	1 cut(s)	539
PctI	GAATGC	2 cut(s)	2268, 2545
Pfl23II	CGTACG	1 cut(s)	2695
PflFI	GACNNNGTC	2 cut(s)	2636, 2650
PleI	GAGTC	4 cut(s)	1366, 1481, 2016, 2713
PpsI	GAGTC	4 cut(s)	1366, 1481, 2016, 2713
Ppu21I	YACGTR	1 cut(s)	1693
PshBI	ATTAAT	1 cut(s)	1041
Psp6I	CCWGG	7 cut(s)	237, 417, 1087, 1156, 1168, 2148, 2303
PspEI	GGTNACC	1 cut(s)	1069
PspFI	CCCAGC	1 cut(s)	2713
PspGI	CCWGG	7 cut(s)	237, 417, 1087, 1156, 1168, 2148, 2303
PspLI	CGTACG	1 cut(s)	2695
PspOMI	GGGCCC	2 cut(s)	109, 1673
PspPI	GGNCC	9 cut(s)	95, 109, 110, 968, 1400, 1673, 1674, 2527, 2841
PsrI	GAACNNNNNNTAC	2 cut(s)	2444, 2476
PstI	CTGCAG	2 cut(s)	394, 2290
PsuI	RGATCY	2 cut(s)	766, 2055
PsyI	GACNNNGTC	2 cut(s)	2636, 2650
PvuII	CAGCTG	1 cut(s)	2198
RsaI	GTAC	8 cut(s)	275, 1093, 1412, 1431, 1615, 1943, 2316, 2697
RsaNI	GTAC	8 cut(s)	274, 1092, 1411, 1430, 1614, 1942, 2315, 2696
RseI	CAYNNNNRTG	1 cut(s)	1451
SapI	GCTCTTC	1 cut(s)	1395
SaqAI	TTAA	3 cut(s)	921, 1041, 1653
Sau96I	GGNCC	9 cut(s)	95, 109, 110, 968, 1400, 1673, 1674, 2527, 2841
ScaI	AGTACT	1 cut(s)	1943
SchI	GAGTC	4 cut(s)	1366, 1481, 2017, 2714
ScrFI	CCNGG	8 cut(s)	239, 419, 1089, 1158, 1170, 2150, 2305, 2710
SduI	GDGCHC	2 cut(s)	113, 1677
SexAI	ACCWGGT	1 cut(s)	1087
SfaNI	GCATC	1 cut(s)	2871
SfcI	CTRYAG	5 cut(s)	390, 1294, 1945, 2286, 2322
SfuI	TTCGAA	1 cut(s)	1266
SinI	GGWCC	2 cut(s)	1400, 2841
SmiMI	CAYNNNNRTG	1 cut(s)	1451
SsiI	CCGC	8 cut(s)	704, 971, 1067, 2019, 2525, 2583, 2758, 2823
SspMI	CTAG	6 cut(s)	129, 293, 333, 693, 878, 1625
StyD4I	CCNGG	8 cut(s)	237, 417, 1087, 1156, 1168, 2148, 2303, 2708
StyI	CCWWGG	3 cut(s)	349, 604, 1006
TaaI	ACNGT	9 cut(s)	64, 886, 1123, 1144, 1929, 1946, 2314, 2488, 2700
TaiI	ACGT	3 cut(s)	1104, 1695, 2697
TaqI	TCGA	7 cut(s)	72, 581, 868, 1084, 1266, 1903, 2175
TaqII	GACCGA	1 cut(s)	2725
TatI	WGTACW	4 cut(s)	1429, 1613, 1941, 2314
TauI	GCSGC	4 cut(s)	2021, 2586, 2760, 2825
Tru1I	TTAA	3 cut(s)	921, 1041, 1653
Tru9I	TTAA	3 cut(s)	921, 1041, 1653
TscAI	CASTG	6 cut(s)	574, 1224, 1485, 1512, 2126, 2800
TseFI	GTSAC	2 cut(s)	1138, 2638
TseI	GCWGC	8 cut(s)	55, 125, 820, 1459, 2198, 2285, 2288, 2790
Tsp45I	GTSAC	2 cut(s)	1138, 2638
TspGWI	ACGGA	3 cut(s)	490, 2866, 2909
TspRI	CASTG	6 cut(s)	574, 1224, 1485, 1512, 2126, 2800
Tth111I	GACNNNGTC	2 cut(s)	2636, 2650
VpaK11BI	GGWCC	2 cut(s)	1400, 2841
VspI	ATTAAT	1 cut(s)	1041
XagI	CCTNNNNNAGG	1 cut(s)	118
XapI	RAATTY	8 cut(s)	145, 724, 870, 1636, 1649, 1981, 2722, 2869
XceI	RCATGY	1 cut(s)	1436
XspI	CTAG	6 cut(s)	129, 293, 333, 693, 878, 1625
ZrmI	AGTACT	1 cut(s)	1943
Zsp2I	ATGCAT	1 cut(s)	1610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.