Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004955

Physical Location & Seq

Genomic Coordinates Reverse (-)

56498659 .. 56499316

Gene Structure 658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0474600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGCTTAATCAAGAAACCGGGACAGGATGGAGTTGCGGTGAATCGAGGAGATGGTCGTGATGGGGTAGTCTCTGCTGGTCAAGAAGAATGTGTTCAGCCAGCTCCTTTTGGACCCTTACCAAAGGGATATGTATGGGATCGCCTATATGTCTCTACCAAAGGTGTTGGACGTCCTCTCTGTGCAGTTCCTATGTGTTGTGTTATTTGCAGCAAGTTTTTAGAGCACATGACTGAAGACTGCCCTCATTTGCATGATGAGAGTTACAGCGATCGCCGTTGGAAGGTTTTTCATGCCCCTCTTGTTGTTAAAACCGCCGCTGAGATTTTAGAAGAGAGGAGATTCATTGATGAAATAGATCCAGAAGATGCTCCTTTCCCCACTGATACATTGGTTGCAGAATTTTCTTCATTCTCCACTAATGCATTGGGAGCTGCGTGCAGACCAAAGCCTTCGATGGCTGAAAAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0045036 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

157

Amino Acids

17.31

Weight (kDa)

5.37

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20300 AT5G20300 AT5G20300 AT5G20300 AT5G20300
fragaria_vesca	FvH4_1g02420 FvH4_1g02420 FvH4_1g02420 FvH4_1g02420 FvH4_1g02420 FvH4_1g02420 FvH4_1g02420 FvH4_1g02420
malus_domestica	MD02G1020900.v1.1 MD15G1164100.v1.1
prunus_persica	Prupe.7G250500_v2.0.a1 Prupe.7G250500_v2.0.a1
pyrus_communis	pycom02g01840 pycom15g14720
rosa_chinensis	RchiOBHm_Chr2g0087381
rosa_laevigata	RLG00000015861
rosa_multiflora	Rmu_sc0012811.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153590
rosa_rugosa	Rorug01G0474600 Rorug01G0474700
rosa_samantha	Rh2AG028200 Rh2BG028100 Rh2CG028400 Rh2DG028200
rosa_wichuraiana	Rw2G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	175
AciI	CCGC	3 cut(s)	38, 315, 318
AclWI	GGATC	2 cut(s)	147, 353
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	283
AluBI	AGCT	3 cut(s)	6, 104, 434
AluI	AGCT	3 cut(s)	6, 104, 434
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	76, 157
AlwI	GGATC	2 cut(s)	147, 353
ApeKI	GCWGC	2 cut(s)	210, 434
ApoI	RAATTY	1 cut(s)	401
AsiSI	GCGATCGC	1 cut(s)	274
Asp700I	GAANNNNTTC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	113
BaeI	ACNNNNGTAYC	2 cut(s)	378, 411
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	222, 421
BccI	CCATC	4 cut(s)	23, 47, 56, 451
BceAI	ACGGC	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	2 cut(s)	76, 157
BisI	GCNGC	3 cut(s)	211, 318, 435
BlsI	GCNGC	3 cut(s)	212, 319, 436
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	312
BseRI	GAGGAG	2 cut(s)	63, 352
BseXI	GCAGC	2 cut(s)	222, 421
BsgI	GTGCAG	2 cut(s)	204, 460
Bsh1285I	CGRYCG	1 cut(s)	274
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	2 cut(s)	76, 157
BsmFI	GGGAC	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	139, 271, 358
BspACI	CCGC	3 cut(s)	38, 315, 318
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	2 cut(s)	147, 353
BssMI	GATC	3 cut(s)	139, 271, 358
BssNI	GRCGYC	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	102, 439
BstDEI	CTNAG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	3 cut(s)	142, 274, 361
BstMAI	GTCTC	2 cut(s)	76, 157
BstMBI	GATC	3 cut(s)	139, 271, 358
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	19
BstV1I	GCAGC	2 cut(s)	222, 421
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	2 cut(s)	102, 439
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	3 cut(s)	229, 254, 293
CviJI	RGCY	6 cut(s)	6, 100, 104, 434, 451, 461
CviKI_1	RGCY	6 cut(s)	6, 100, 104, 434, 451, 461
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	3 cut(s)	141, 273, 360
DpnII	GATC	3 cut(s)	139, 271, 358
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	427
FaeI	CATG	3 cut(s)	232, 257, 296
FaiI	YATR	8 cut(s)	132, 136, 148, 150, 194, 230, 255, 294
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	3 cut(s)	228, 253, 292
Fnu4HI	GCNGC	3 cut(s)	211, 318, 435
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	3 cut(s)	211, 318, 435
GluI	GCNGC	3 cut(s)	211, 318, 435
HapII	CCGG	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	172
Hin1II	CATG	3 cut(s)	232, 257, 296
HinfI	GANTC	2 cut(s)	43, 342
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	52
Hpy188III	TCNNGA	4 cut(s)	13, 59, 83, 362
HpyAV	CCTTC	2 cut(s)	277, 462
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	6 cut(s)	185, 210, 253, 398, 425, 441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	172
Hsp92I	GRCGYC	1 cut(s)	172
Hsp92II	CATG	3 cut(s)	232, 257, 296
Kzo9I	GATC	3 cut(s)	139, 271, 358
LmnI	GCTCC	3 cut(s)	109, 376, 431
LpnPI	CCDG	5 cut(s)	11, 33, 63, 114, 375
Lsp1109I	GCAGC	2 cut(s)	222, 421
LweI	GCATC	1 cut(s)	358
MaeII	ACGT	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	3 cut(s)	141, 273, 360
MboI	GATC	3 cut(s)	139, 271, 358
MboII	GAAGA	5 cut(s)	98, 248, 344, 377, 399
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	1 cut(s)	401
MmeI	TCCRAC	2 cut(s)	148, 260
MnlI	CCTC	5 cut(s)	41, 186, 255, 309, 330
Mph1103I	ATGCAT	1 cut(s)	427
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	2 cut(s)	8, 309
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	431
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	3 cut(s)	139, 271, 358
NlaIII	CATG	3 cut(s)	232, 257, 296
NlaIV	GGNNCC	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	43, 342
PkrI	GCNGC	3 cut(s)	212, 319, 436
Ple19I	CGATCG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	358
PvuI	CGATCG	1 cut(s)	274
RgaI	GCGATCGC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	8, 309
SatI	GCNGC	3 cut(s)	211, 318, 435
Sau3AI	GATC	3 cut(s)	139, 271, 358
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	6 cut(s)	8, 106, 166, 175, 288, 436
SfaAI	GCGATCGC	1 cut(s)	274
SfaNI	GCATC	1 cut(s)	358
SgfI	GCGATCGC	1 cut(s)	274
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	1 cut(s)	401
SsiI	CCGC	3 cut(s)	38, 315, 318
StyD4I	CCNGG	1 cut(s)	19
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	2 cut(s)	46, 455
TasI	AATT	1 cut(s)	401
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	43, 342
Tru1I	TTAA	2 cut(s)	8, 309
Tru9I	TTAA	2 cut(s)	8, 309
TscAI	CASTG	1 cut(s)	388
TseI	GCWGC	2 cut(s)	210, 434
TspDTI	ATGAA	4 cut(s)	281, 334, 366, 399
TspRI	CASTG	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	401
XcmI	CCANNNNNNNNNTGG	2 cut(s)	388, 424
XmnI	GAANNNNTTC	1 cut(s)	93
ZraI	GACGTC	1 cut(s)	173
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.