Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012811.1

Orthogroup ID

OG0004955

Physical Location & Seq

Genomic Coordinates Reverse (-)

924 .. 1436

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012811.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ctgtgggaggatgtttttgatggtggagtctctttgacatcttttgggaacaagtattactttggtgccaagcttgaagaaactgtttcaattgggaagaggttgaagtttctgatgaacgcaggccaaatgatgaatgcaagcaaattgattgtggatcgtgaacaagtcgcatatggtggctctgtggaagctactttacggggtagagactaccctgtgagaaatgactttgtcaccctgacaatgtctatcctttctttcaataaagagatggtgttgggtggaaacgtacggtccgagtcccggctgggcagaaatttgaaggtatcggtcaatgctaatctaaatagccgcaggatggggaagttgagcataaagacaagcagcagtgatcatttgccgtttggtctggttgccgctttcacaattttctggaccctcttacggagaaagggcatcgcaaattcaagtaatgaattaggggaggctgaatcaggggagactggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0045036 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1 TOC159_MAD

Protein Analysis

170

Amino Acids

18.71

Weight (kDa)

9.6

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20300 AT5G20300 AT5G20300 AT5G20300 AT5G20300
fragaria_vesca	FvH4_1g02420 FvH4_1g02420 FvH4_1g02420 FvH4_1g02420 FvH4_1g02420 FvH4_1g02420 FvH4_1g02420 FvH4_1g02420
malus_domestica	MD02G1020900.v1.1 MD15G1164100.v1.1
prunus_persica	Prupe.7G250500_v2.0.a1 Prupe.7G250500_v2.0.a1
pyrus_communis	pycom02g01840 pycom15g14720
rosa_chinensis	RchiOBHm_Chr2g0087381
rosa_laevigata	RLG00000015861
rosa_multiflora	Rmu_sc0012811.1_g000001
rosa_roxburghii	Rroxscaffold_2G00153590
rosa_rugosa	Rorug01G0474600 Rorug01G0474700
rosa_samantha	Rh2AG028200 Rh2BG028100 Rh2CG028400 Rh2DG028200
rosa_wichuraiana	Rw2G002240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AciI	CCGC	2 cut(s)	355, 420
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	2 cut(s)	319, 466
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	3 cut(s)	306, 361, 447
AgsI	TTSAA	6 cut(s)	77, 90, 106, 265, 325, 471
AluBI	AGCT	2 cut(s)	73, 194
AluI	AGCT	2 cut(s)	73, 194
Alw26I	GTCTC	3 cut(s)	34, 204, 497
AlwI	GGATC	1 cut(s)	165
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	387
ApoI	RAATTY	2 cut(s)	319, 466
AspS9I	GGNCC	2 cut(s)	297, 438
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	2 cut(s)	297, 438
BanI	GGYRCC	1 cut(s)	65
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	3 cut(s)	14, 268, 355
BceAI	ACGGC	1 cut(s)	388
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	3 cut(s)	34, 204, 497
BisI	GCNGC	3 cut(s)	355, 388, 420
BlsI	GCNGC	3 cut(s)	356, 389, 421
Bme1390I	CCNGG	1 cut(s)	307
Bme18I	GGWCC	2 cut(s)	297, 438
BmgT120I	GGNCC	2 cut(s)	297, 438
BmiI	GGNNCC	2 cut(s)	67, 440
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	3 cut(s)	306, 361, 447
Bse1I	ACTGG	1 cut(s)	511
BseGI	GGATG	2 cut(s)	16, 366
BseLI	CCNNNNNNNGG	3 cut(s)	306, 361, 447
BseNI	ACTGG	1 cut(s)	511
BseXI	GCAGC	1 cut(s)	399
BseYI	CCCAGC	1 cut(s)	310
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	307
BsiWI	CGTACG	1 cut(s)	292
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	3 cut(s)	306, 361, 447
BsmAI	GTCTC	3 cut(s)	34, 204, 497
BsmFI	GGGAC	1 cut(s)	289
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	157, 394
BspACI	CCGC	2 cut(s)	355, 420
BspANI	GGCC	1 cut(s)	126
BspLI	GGNNCC	2 cut(s)	67, 440
BspPI	GGATC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	511
BssMI	GATC	2 cut(s)	157, 394
Bst4CI	ACNGT	2 cut(s)	85, 297
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	124, 142
BstF5I	GGATG	2 cut(s)	16, 366
BstKTI	GATC	2 cut(s)	160, 397
BstMAI	GTCTC	3 cut(s)	34, 204, 497
BstMBI	GATC	2 cut(s)	157, 394
BstSCI	CCNGG	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	445
BtsCI	GGATG	2 cut(s)	16, 366
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	124, 142
Cfr13I	GGNCC	2 cut(s)	297, 438
CpoI	CGGWCCG	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	293
CspI	CGGWCCG	1 cut(s)	297
CviJI	RGCY	7 cut(s)	73, 126, 183, 194, 310, 354, 491
CviKI_1	RGCY	7 cut(s)	73, 126, 183, 194, 310, 354, 491
CviQI	GTAC	1 cut(s)	293
DpnI	GATC	2 cut(s)	159, 396
DpnII	GATC	2 cut(s)	157, 394
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco47I	GGWCC	2 cut(s)	297, 438
FaiI	YATR	3 cut(s)	175, 177, 377
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	1 cut(s)	289
FauNDI	CATATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	3 cut(s)	355, 388, 420
FokI	GGATG	2 cut(s)	23, 373
Fsp4HI	GCNGC	3 cut(s)	355, 388, 420
GluI	GCNGC	3 cut(s)	355, 388, 420
GsaI	CCCAGC	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	3 cut(s)	27, 302, 494
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	114, 301
Hpy188III	TCNNGA	2 cut(s)	161, 436
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	319
HpyCH4III	ACNGT	2 cut(s)	85, 297
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	291
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	157, 394
Lsp1109I	GCAGC	1 cut(s)	399
LweI	GCATC	1 cut(s)	468
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	2 cut(s)	159, 396
MboI	GATC	2 cut(s)	157, 394
MboII	GAAGA	2 cut(s)	89, 109
MfeI	CAATTG	1 cut(s)	90
MluCI	AATT	6 cut(s)	90, 146, 319, 429, 466, 479
MlyI	GAGTC	2 cut(s)	36, 311
MnlI	CCTC	3 cut(s)	93, 452, 481
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	307
MunI	CAATTG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	307
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	2 cut(s)	157, 394
NlaIV	GGNNCC	2 cut(s)	67, 440
NmuCI	GTSAC	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PctI	GAATGC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	494
Pfl23II	CGTACG	1 cut(s)	292
PflFI	GACNNNGTC	2 cut(s)	233, 247
PkrI	GCNGC	3 cut(s)	356, 389, 421
PleI	GAGTC	2 cut(s)	35, 310
PpsI	GAGTC	2 cut(s)	35, 310
PspFI	CCCAGC	1 cut(s)	310
PspLI	CGTACG	1 cut(s)	292
PspN4I	GGNNCC	2 cut(s)	67, 440
PspPI	GGNCC	2 cut(s)	297, 438
PsrI	GAACNNNNNNTAC	2 cut(s)	41, 73
PsyI	GACNNNGTC	2 cut(s)	233, 247
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
Rsr2I	CGGWCCG	1 cut(s)	297
RsrII	CGGWCCG	1 cut(s)	297
SatI	GCNGC	3 cut(s)	355, 388, 420
Sau3AI	GATC	2 cut(s)	157, 394
Sau96I	GGNCC	2 cut(s)	297, 438
SchI	GAGTC	2 cut(s)	36, 311
ScrFI	CCNGG	1 cut(s)	307
SetI	ASST	5 cut(s)	75, 104, 196, 294, 330
SfaNI	GCATC	1 cut(s)	468
SinI	GGWCC	2 cut(s)	297, 438
Sse9I	AATT	6 cut(s)	90, 146, 319, 429, 466, 479
SsiI	CCGC	2 cut(s)	355, 420
StyD4I	CCNGG	1 cut(s)	305
TaaI	ACNGT	2 cut(s)	85, 297
TaiI	ACGT	1 cut(s)	294
TaqII	GACCGA	1 cut(s)	322
TasI	AATT	6 cut(s)	90, 146, 319, 429, 466, 479
TauI	GCSGC	2 cut(s)	357, 422
TfiI	GAWTC	1 cut(s)	494
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	387
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	131, 149, 492
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	1 cut(s)	397
Tth111I	GACNNNGTC	2 cut(s)	233, 247
VpaK11BI	GGWCC	2 cut(s)	297, 438
XapI	RAATTY	2 cut(s)	319, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.