RLG00000016649

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0019067
Physical Location & Seq
Forward (+)
8573076 .. 8573813
738 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016649

Sequence Viewer

Length: 738 bp
ATGTCTACGGCTCAAGACTCCACAGTAGTGATTGGATATCCAGCTGGGGCGTATCAAGTCGACACCGGCTACCCTTACGACCATCCATCCCCTGCCAGCTCATCCCCTGCCCGCTCAAACTACGACCAACCCACAAGGTCGGACCGGTACCTCCAGCGCACTAAGTCCAGCGACCGAGCAGTAGCTATATTACTAGGCGTCACTCTTGGAACCATCATCATAGTGACGGCGGCTCTTCTGGCCGTGAGACGGAAAGACCCCGAGTTCAAGCTCGAGTCGGCAACAGTGTCTCGACTCAACGCCACTGGCCCCGAGTTAACGGCCACGTGGAACATCACTCTCCTCATCACCAACCCCGACCACAGATACAGAGTCTCCTTCAAAACCCTCCAGGCATGGCTCCTCTACCGGGACCACAGCCGTCCCATGCTGCAGGCTGCGACGCCGCTGCCTCCCTTAGTTGTGAACAAGAGGAACGAGACAAGTCTCGATATGAAGCTCGCGGCGGTGAGCCAGTGGGTAGGCCGTGACGTGGGAAAGGAAATCTACGACGACAGGAGTCGGGGGTTTTTGAGTTTCCGACTTAGGGTGAGGGCTTGTTCTGGACATGATGTCCACAACTTTTTAACCGGCTGGTGTTTTCTGTTCGACTGTGATCGGGTTTATTTCGGGTTTTACCATAATGAGACGGGCACGTTGATCGAACCAAGAAAATGCGATTTATTAATTCACCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

246

Amino Acids

27.61

Weight (kDa)

9.04

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019067)

Species Orthologous Gene IDs
rosa_laevigata RLG00000016649 RLG00000025794
rosa_multiflora Rmu_sc0004096.1_g000005
rosa_rugosa Rorug02G0058400
rosa_samantha Rh2AG105700 Rh2BG108200 Rh2CG110000 Rh2DG108800
rosa_wichuraiana Rw2G008180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 147
AccBSI CCGCTC 1 cut(s) 114
AccI GTMKAC 2 cut(s) 5, 60
AccII CGCG 1 cut(s) 503
AciI CCGC 5 cut(s) 112, 230, 446, 503, 506
AcoI YGGCCR 2 cut(s) 240, 321
AcvI CACGTG 1 cut(s) 327
AcyI GRCGYC 2 cut(s) 198, 443
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 4 cut(s) 249, 409, 532, 586
AgeI ACCGGT 1 cut(s) 144
AgsI TTSAA 2 cut(s) 268, 382
AhdI GACNNNNNGTC 1 cut(s) 611
AjiI CACGTC 1 cut(s) 532
AjnI CCWGG 1 cut(s) 390
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 5 cut(s) 44, 99, 185, 271, 499
AluI AGCT 5 cut(s) 44, 99, 185, 271, 499
Alw26I GTCTC 6 cut(s) 241, 294, 379, 473, 491, 680
Ama87I CYCGRG 3 cut(s) 260, 272, 311
AoxI GGCC 4 cut(s) 240, 307, 321, 523
ApeKI GCWGC 3 cut(s) 430, 437, 448
AseI ATTAAT 1 cut(s) 725
AsiGI ACCGGT 1 cut(s) 144
Asp718I GGTACC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 3 cut(s) 142, 308, 412
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 4 cut(s) 340, 520, 601, 722
AvaI CYCGRG 3 cut(s) 260, 272, 311
AvaII GGWCC 2 cut(s) 142, 412
BaeGI GKGCMC 1 cut(s) 695
BanI GGYRCC 1 cut(s) 147
BbrPI CACGTG 1 cut(s) 327
BbvI GCAGC 3 cut(s) 417, 424, 435
BccI CCATC 3 cut(s) 90, 94, 221
BceAI ACGGC 6 cut(s) 24, 227, 243, 336, 405, 510
BcgI CGANNNNNNTGC 4 cut(s) 430, 464, 682, 716
BciT130I CCWGG 1 cut(s) 392
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 6 cut(s) 241, 294, 379, 473, 491, 680
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 431
BisI GCNGC 6 cut(s) 231, 431, 438, 446, 449, 504
BlsI GCNGC 6 cut(s) 232, 432, 439, 447, 450, 505
Bme1390I CCNGG 2 cut(s) 392, 410
Bme18I GGWCC 2 cut(s) 142, 412
BmeRI GACNNNNNGTC 1 cut(s) 611
BmeT110I CYCGRG 3 cut(s) 260, 272, 311
BmgBI CACGTC 1 cut(s) 532
BmgT120I GGNCC 3 cut(s) 142, 308, 412
BmiI GGNNCC 5 cut(s) 149, 211, 310, 401, 413
BmrFI CCNGG 2 cut(s) 392, 410
BoxI GACNNNNGTC 1 cut(s) 558
BpmI CTGGAG 2 cut(s) 137, 374
BpuMI CCSGG 1 cut(s) 410
BsaAI YACGTR 1 cut(s) 327
BsaHI GRCGYC 2 cut(s) 198, 443
BsaWI WCCGGW 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 4 cut(s) 249, 409, 532, 586
Bse118I RCCGGY 3 cut(s) 65, 144, 629
Bse1I ACTGG 2 cut(s) 310, 514
BseBI CCWGG 1 cut(s) 392
BseGI GGATG 3 cut(s) 82, 86, 101
BseLI CCNNNNNNNGG 4 cut(s) 249, 409, 532, 586
BseNI ACTGG 2 cut(s) 310, 514
BseRI GAGGAG 2 cut(s) 332, 392
BseSI GKGCMC 1 cut(s) 695
BseXI GCAGC 3 cut(s) 417, 424, 435
BseYI CCCAGC 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 503
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 4 cut(s) 242, 309, 323, 525
BshNI GGYRCC 1 cut(s) 147
BshTI ACCGGT 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 175
BsiHKCI CYCGRG 3 cut(s) 260, 272, 311
BsiSI CCGG 4 cut(s) 66, 145, 409, 630
BslFI GGGAC 2 cut(s) 408, 425
BslI CCNNNNNNNGG 4 cut(s) 249, 409, 532, 586
BsmAI GTCTC 6 cut(s) 241, 294, 379, 473, 491, 680
BsmBI CGTCTC 2 cut(s) 241, 680
BsmFI GGGAC 2 cut(s) 408, 425
BsnI GGCC 4 cut(s) 242, 309, 323, 525
BsoBI CYCGRG 3 cut(s) 260, 272, 311
Bsp1286I GDGCHC 1 cut(s) 695
Bsp143I GATC 2 cut(s) 655, 699
BspACI CCGC 5 cut(s) 112, 230, 446, 503, 506
BspANI GGCC 4 cut(s) 242, 309, 323, 525
BspFNI CGCG 1 cut(s) 503
BspLI GGNNCC 5 cut(s) 149, 211, 310, 401, 413
BspMAI CTGCAG 1 cut(s) 435
BspQI GCTCTTC 1 cut(s) 240
BspT107I GGYRCC 1 cut(s) 147
BsrBI CCGCTC 1 cut(s) 114
BsrFI RCCGGY 3 cut(s) 65, 144, 629
BsrI ACTGG 2 cut(s) 310, 514
BssAI RCCGGY 3 cut(s) 65, 144, 629
BssMI GATC 2 cut(s) 655, 699
BssNI GRCGYC 2 cut(s) 198, 443
Bst2UI CCWGG 1 cut(s) 392
Bst4CI ACNGT 3 cut(s) 25, 286, 653
Bst6I CTCTTC 1 cut(s) 240
BstACI GRCGYC 2 cut(s) 198, 443
BstBAI YACGTR 1 cut(s) 327
BstC8I GCNNGC 4 cut(s) 97, 112, 435, 501
BstDEI CTNAG 3 cut(s) 162, 457, 584
BstF5I GGATG 3 cut(s) 82, 86, 101
BstFNI CGCG 1 cut(s) 503
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 2 cut(s) 658, 702
BstMAI GTCTC 6 cut(s) 241, 294, 379, 473, 491, 680
BstMBI GATC 2 cut(s) 655, 699
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 392
BstPAI GACNNNNGTC 1 cut(s) 558
BstSCI CCNGG 2 cut(s) 390, 408
BstSFI CTRYAG 1 cut(s) 431
BstSLI GKGCMC 1 cut(s) 695
BstUI CGCG 1 cut(s) 503
BstV1I GCAGC 3 cut(s) 417, 424, 435
BsuRI GGCC 4 cut(s) 242, 309, 323, 525
BtrI CACGTC 1 cut(s) 532
BtsCI GGATG 3 cut(s) 82, 86, 101
BtsIMutI CAGTG 3 cut(s) 291, 303, 521
Cac8I GCNNGC 4 cut(s) 97, 112, 435, 501
CfoI GCGC 1 cut(s) 159
Cfr10I RCCGGY 3 cut(s) 65, 144, 629
Cfr13I GGNCC 3 cut(s) 142, 308, 412
CpoI CGGWCCG 1 cut(s) 142
CseI GACGC 2 cut(s) 187, 451
Csp6I GTAC 1 cut(s) 148
CspAI ACCGGT 1 cut(s) 144
CspI CGGWCCG 1 cut(s) 142
CviAII CATG 3 cut(s) 396, 427, 608
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 3 cut(s) 162, 457, 584
DpnI GATC 2 cut(s) 657, 701
DpnII GATC 2 cut(s) 655, 699
DriI GACNNNNNGTC 1 cut(s) 611
EaeI YGGCCR 2 cut(s) 240, 321
Eam1104I CTCTTC 1 cut(s) 240
Eam1105I GACNNNNNGTC 1 cut(s) 611
EarI CTCTTC 1 cut(s) 240
Eco32I GATATC 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 142, 412
Eco72I CACGTG 1 cut(s) 327
Eco88I CYCGRG 3 cut(s) 260, 272, 311
EcoRII CCWGG 1 cut(s) 390
EcoRV GATATC 1 cut(s) 38
Esp3I CGTCTC 2 cut(s) 241, 680
FaeI CATG 3 cut(s) 399, 430, 611
FaiI YATR 8 cut(s) 188, 221, 397, 428, 494, 609, 681, 736
FaqI GGGAC 2 cut(s) 408, 425
FatI CATG 3 cut(s) 395, 426, 607
FauI CCCGC 1 cut(s) 119
FblI GTMKAC 2 cut(s) 5, 60
Fnu4HI GCNGC 6 cut(s) 231, 431, 438, 446, 449, 504
FokI GGATG 3 cut(s) 69, 73, 88
Fsp4HI GCNGC 6 cut(s) 231, 431, 438, 446, 449, 504
FspBI CTAG 1 cut(s) 194
GlaI GCGC 1 cut(s) 158
GluI GCNGC 6 cut(s) 231, 431, 438, 446, 449, 504
GsaI CCCAGC 1 cut(s) 48
GsuI CTGGAG 2 cut(s) 137, 374
HaeIII GGCC 4 cut(s) 242, 309, 323, 525
HapII CCGG 4 cut(s) 66, 145, 409, 630
HgaI GACGC 2 cut(s) 187, 451
HhaI GCGC 1 cut(s) 159
Hin1I GRCGYC 2 cut(s) 198, 443
Hin1II CATG 3 cut(s) 399, 430, 611
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HincII GTYRAC 2 cut(s) 61, 318
HindII GTYRAC 2 cut(s) 61, 318
HinfI GANTC 5 cut(s) 17, 275, 294, 372, 559
HpaI GTTAAC 1 cut(s) 318
HpaII CCGG 4 cut(s) 66, 145, 409, 630
HphI GGTGA 4 cut(s) 340, 520, 601, 722
Hpy166II GTNNAC 5 cut(s) 6, 61, 318, 466, 616
Hpy188I TCNGA 2 cut(s) 142, 581
Hpy188III TCNNGA 4 cut(s) 14, 291, 488, 603
Hpy8I GTNNAC 5 cut(s) 6, 61, 318, 466, 616
Hpy99I CGWCG 2 cut(s) 445, 554
HpyAV CCTTC 1 cut(s) 388
HpyCH4III ACNGT 3 cut(s) 25, 286, 653
HpyCH4IV ACGT 3 cut(s) 326, 531, 695
HpyCH4V TGCA 1 cut(s) 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 3 cut(s) 162, 457, 584
HpySE526I ACGT 3 cut(s) 326, 531, 695
Hsp92I GRCGYC 2 cut(s) 198, 443
Hsp92II CATG 3 cut(s) 399, 430, 611
HspAI GCGC 1 cut(s) 157
KpnI GGTACC 1 cut(s) 151
KspAI GTTAAC 1 cut(s) 318
Kzo9I GATC 2 cut(s) 655, 699
LguI GCTCTTC 1 cut(s) 240
LmnI GCTCC 1 cut(s) 405
Lsp1109I GCAGC 3 cut(s) 417, 424, 435
MaeI CTAG 1 cut(s) 194
MaeII ACGT 3 cut(s) 326, 531, 695
MaeIII GTNAC 3 cut(s) 199, 223, 527
MalI GATC 2 cut(s) 657, 701
MbiI CCGCTC 1 cut(s) 114
MboI GATC 2 cut(s) 655, 699
MboII GAAGA 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 695
MluCI AATT 1 cut(s) 726
MlyI GAGTC 5 cut(s) 11, 284, 288, 381, 568
MmeI TCCRAC 2 cut(s) 120, 604
MnlI CCTC 7 cut(s) 161, 353, 398, 413, 462, 465, 585
MseI TTAA 3 cut(s) 317, 626, 725
MslI CAYNNNNRTG 2 cut(s) 26, 221
MspA1I CMGCKG 2 cut(s) 44, 448
MspI CCGG 4 cut(s) 66, 145, 409, 630
MspR9I CCNGG 2 cut(s) 392, 410
MvaI CCWGG 1 cut(s) 392
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 1 cut(s) 239
NciI CCSGG 1 cut(s) 410
NdeII GATC 2 cut(s) 655, 699
NlaIII CATG 3 cut(s) 399, 430, 611
NlaIV GGNNCC 5 cut(s) 149, 211, 310, 401, 413
NmuCI GTSAC 3 cut(s) 199, 223, 527
OliI CACNNNNGTG 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 272
PciSI GCTCTTC 1 cut(s) 240
PinAI ACCGGT 1 cut(s) 144
PkrI GCNGC 6 cut(s) 232, 432, 439, 447, 450, 505
PleI GAGTC 5 cut(s) 11, 283, 288, 380, 567
PmaCI CACGTG 1 cut(s) 327
PmlI CACGTG 1 cut(s) 327
PpsI GAGTC 5 cut(s) 11, 283, 288, 380, 567
Ppu21I YACGTR 1 cut(s) 327
PshAI GACNNNNGTC 1 cut(s) 558
PshBI ATTAAT 1 cut(s) 725
Psp6I CCWGG 1 cut(s) 390
PspCI CACGTG 1 cut(s) 327
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 1 cut(s) 390
PspN4I GGNNCC 5 cut(s) 149, 211, 310, 401, 413
PspPI GGNCC 3 cut(s) 142, 308, 412
PspXI VCTCGAGB 1 cut(s) 272
PstI CTGCAG 1 cut(s) 435
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 2 cut(s) 26, 221
Rsr2I CGGWCCG 1 cut(s) 142
RsrII CGGWCCG 1 cut(s) 142
SalI GTCGAC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 240
SaqAI TTAA 3 cut(s) 317, 626, 725
SatI GCNGC 6 cut(s) 231, 431, 438, 446, 449, 504
Sau3AI GATC 2 cut(s) 655, 699
Sau96I GGNCC 3 cut(s) 142, 308, 412
SchI GAGTC 5 cut(s) 11, 284, 288, 381, 568
ScrFI CCNGG 2 cut(s) 392, 410
SduI GDGCHC 1 cut(s) 695
SfcI CTRYAG 1 cut(s) 431
Sfr274I CTCGAG 1 cut(s) 272
SinI GGWCC 2 cut(s) 142, 412
SlaI CTCGAG 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 26, 221
SmlI CTYRAG 2 cut(s) 12, 272
SmoI CTYRAG 2 cut(s) 12, 272
Sse9I AATT 1 cut(s) 726
SsiI CCGC 5 cut(s) 112, 230, 446, 503, 506
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 390, 408
TaaI ACNGT 3 cut(s) 25, 286, 653
TaiI ACGT 3 cut(s) 329, 534, 698
TaqI TCGA 6 cut(s) 60, 273, 292, 489, 648, 702
TaqII GACCGA 1 cut(s) 189
TasI AATT 1 cut(s) 726
TauI GCSGC 3 cut(s) 233, 448, 506
Tru1I TTAA 3 cut(s) 317, 626, 725
Tru9I TTAA 3 cut(s) 317, 626, 725
TscAI CASTG 3 cut(s) 291, 310, 521
TseFI GTSAC 3 cut(s) 199, 223, 527
TseI GCWGC 3 cut(s) 430, 437, 448
Tsp45I GTSAC 3 cut(s) 199, 223, 527
TspDTI ATGAA 1 cut(s) 509
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 3 cut(s) 291, 310, 521
VpaK11BI GGWCC 2 cut(s) 142, 412
VspI ATTAAT 1 cut(s) 725
XhoI CTCGAG 1 cut(s) 272
XmiI GTMKAC 2 cut(s) 5, 60
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.