Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007956

Physical Location & Seq

Genomic Coordinates Forward (+)

4518932 .. 4521021

Gene Structure 2090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0058400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGGGAGCAGTTATTTTGGGGAGCCAAACATGGGAAACGAAAGAGGAGGCGGATCGTCTTCTAGTTCTTCAAGGAAAGGGAAGAAGAGTAATTCGGACAAGCCGAAGCAACCGCAGAGAGGGCTTGGAGTTGCTCAATTAGAGAAGATCAGATTACATGGCCAAATGGGATTCATCAATCCTTACCCTACTAATAATTTCATCAATAACCAGGTGGAGGATAACAGAGTGCAAGCAGCAGCTTATTCATCGTCTTTCGCTTCTTCGCAGTCTTCTTCATCTCCCTCAGTCTCTTATGGCTTCCACCCTAACATCATGATGGGGCTCGGTGAATATGATCAAAGAGCAAGCATCATATATGGTGATCCTTCCCAACGAAACAGTACAACACCAAGATGGGAACCCAGCAATGCCATGTTAGAGCCGACCCAACAGTTTGTGCAACCAGGCATCACTACTAGACACCTCCTAAATCCACCTGCAGAAGTACTAGAGGAGTTTCATCACAAGAAGAGCAAAAAACATAGAAGTAATTCAATGGGCTCAAGCAGTCAGAATTCTGAATCAAGTGACTCTCAAGAAGTAGATTTGGAACTCAGACTCTCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 FYVE

Protein Analysis

203

Amino Acids

22.31

Weight (kDa)

8.83

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210
fragaria_vesca	FvH4_1g09680 FvH4_1g09680
malus_domestica	MD02G1105800.v1.1 MD15G1225700.v1.1
prunus_persica	Prupe.7G189300_v2.0.a1
pyrus_communis	pycom02g08370 pycom15g20060
rosa_chinensis	RchiOBHm_Chr2g0096541
rosa_laevigata	RLG00000016647
rosa_multiflora	Rmu_sc0004096.1_g000009
rosa_roxburghii	Rroxscaffold_2G00145550
rosa_rugosa	Rorug02G0058400
rosa_samantha	Rh2AG105500 Rh2BG107800 Rh2CG109600 Rh2DG108600
rosa_wichuraiana	Rw2G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	487
Acc36I	ACCTGC	1 cut(s)	487
AciI	CCGC	2 cut(s)	51, 113
AclWI	GGATC	2 cut(s)	61, 359
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	1 cut(s)	556
AfaI	GTAC	2 cut(s)	385, 489
AfiI	CCNNNNNNNGG	3 cut(s)	32, 119, 217
AgsI	TTSAA	2 cut(s)	72, 537
AjnI	CCWGG	2 cut(s)	210, 445
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	2 cut(s)	61, 359
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	236, 239
ApoI	RAATTY	1 cut(s)	556
Asp700I	GAANNNNTTC	1 cut(s)	532
AsuHPI	GGTGA	2 cut(s)	341, 374
BalI	TGGCCA	1 cut(s)	162
BanII	GRGCYC	2 cut(s)	327, 545
BbsI	GAAGAC	2 cut(s)	51, 264
BbvI	GCAGC	2 cut(s)	248, 251
BccI	CCATC	2 cut(s)	313, 390
BciT130I	CCWGG	2 cut(s)	212, 447
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	3 cut(s)	63, 459, 491
BfmI	CTRYAG	1 cut(s)	480
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	2 cut(s)	237, 240
BlsI	GCNGC	2 cut(s)	238, 241
BmcAI	AGTACT	1 cut(s)	489
Bme1390I	CCNGG	2 cut(s)	212, 447
BmiI	GGNNCC	2 cut(s)	24, 402
BmrFI	CCNGG	2 cut(s)	212, 447
BmsI	GCATC	2 cut(s)	360, 459
BpiI	GAAGAC	2 cut(s)	51, 264
BpuEI	CTTGAG	2 cut(s)	529, 561
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 119, 217
Bse3DI	GCAATG	1 cut(s)	415
BseBI	CCWGG	2 cut(s)	212, 447
BseLI	CCNNNNNNNGG	3 cut(s)	32, 119, 217
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	300, 610
BseRI	GAGGAG	2 cut(s)	60, 509
BseXI	GCAGC	2 cut(s)	248, 251
BseYI	CCCAGC	1 cut(s)	404
BshFI	GGCC	1 cut(s)	162
BslI	CCNNNNNNNGG	3 cut(s)	32, 119, 217
BsmAI	GTCTC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	2 cut(s)	327, 545
Bsp143I	GATC	4 cut(s)	53, 147, 337, 364
BspACI	CCGC	2 cut(s)	51, 113
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	2 cut(s)	299, 609
BspHI	TCATGA	1 cut(s)	315
BspLI	GGNNCC	2 cut(s)	24, 402
BspMAI	CTGCAG	1 cut(s)	484
BspMI	ACCTGC	1 cut(s)	487
BspPI	GGATC	2 cut(s)	61, 359
BspQI	GCTCTTC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	415
BssMI	GATC	4 cut(s)	53, 147, 337, 364
Bst2UI	CCWGG	2 cut(s)	212, 447
Bst4CI	ACNGT	2 cut(s)	383, 435
Bst6I	CTCTTC	2 cut(s)	80, 506
BstC8I	GCNNGC	2 cut(s)	234, 349
BstDEI	CTNAG	2 cut(s)	286, 596
BstKTI	GATC	4 cut(s)	56, 150, 340, 367
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	4 cut(s)	53, 147, 337, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	2 cut(s)	212, 447
BstSCI	CCNGG	2 cut(s)	210, 445
BstSFI	CTRYAG	1 cut(s)	480
BstV1I	GCAGC	2 cut(s)	248, 251
BstV2I	GAAGAC	2 cut(s)	51, 264
BsuRI	GGCC	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	2 cut(s)	234, 349
CciI	TCATGA	1 cut(s)	315
CsiI	ACCWGGT	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	384, 488
CviAII	CATG	4 cut(s)	31, 158, 316, 415
CviJI	RGCY	9 cut(s)	25, 103, 124, 162, 242, 300, 325, 424, 543
CviKI_1	RGCY	9 cut(s)	25, 103, 124, 162, 242, 300, 325, 424, 543
CviQI	GTAC	2 cut(s)	384, 488
DdeI	CTNAG	2 cut(s)	286, 596
DpnI	GATC	4 cut(s)	55, 149, 339, 366
DpnII	GATC	4 cut(s)	53, 147, 337, 364
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	80, 506
EarI	CTCTTC	2 cut(s)	80, 506
EciI	GGCGGA	1 cut(s)	66
Eco24I	GRGCYC	2 cut(s)	327, 545
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	2 cut(s)	210, 445
EcoT38I	GRGCYC	2 cut(s)	327, 545
FaeI	CATG	4 cut(s)	34, 161, 319, 418
FatI	CATG	4 cut(s)	30, 157, 315, 414
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	237, 240
FriOI	GRGCYC	2 cut(s)	327, 545
Fsp4HI	GCNGC	2 cut(s)	237, 240
FspBI	CTAG	3 cut(s)	63, 459, 491
GluI	GCNGC	2 cut(s)	237, 240
GsaI	CCCAGC	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	162
Hin1II	CATG	4 cut(s)	34, 161, 319, 418
HinfI	GANTC	4 cut(s)	171, 563, 572, 600
HphI	GGTGA	2 cut(s)	341, 374
Hpy188I	TCNGA	5 cut(s)	97, 152, 555, 562, 599
Hpy188III	TCNNGA	2 cut(s)	316, 578
HpyAV	CCTTC	1 cut(s)	378
HpyCH4III	ACNGT	2 cut(s)	383, 435
HpyCH4V	TGCA	3 cut(s)	232, 442, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	2 cut(s)	286, 596
Hsp92II	CATG	4 cut(s)	34, 161, 319, 418
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	4 cut(s)	53, 147, 337, 364
LguI	GCTCTTC	1 cut(s)	506
LmnI	GCTCC	2 cut(s)	6, 22
LpnPI	CCDG	6 cut(s)	197, 224, 418, 432, 459, 492
Lsp1109I	GCAGC	2 cut(s)	248, 251
LweI	GCATC	2 cut(s)	360, 459
MabI	ACCWGGT	1 cut(s)	210
MaeI	CTAG	3 cut(s)	63, 459, 491
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	4 cut(s)	55, 149, 339, 366
MboI	GATC	4 cut(s)	53, 147, 337, 364
MboII	GAAGA	9 cut(s)	51, 60, 94, 97, 157, 255, 264, 267, 523
MhlI	GDGCHC	2 cut(s)	327, 545
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	5 cut(s)	91, 137, 196, 532, 556
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	2 cut(s)	566, 594
MnlI	CCTC	7 cut(s)	38, 41, 113, 211, 295, 476, 487
Mox20I	TGGCCA	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	532
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	1 cut(s)	610
MslI	CAYNNNNRTG	2 cut(s)	317, 394
Msp20I	TGGCCA	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	212, 447
MvaI	CCWGG	2 cut(s)	212, 447
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeII	GATC	4 cut(s)	53, 147, 337, 364
NlaIII	CATG	4 cut(s)	34, 161, 319, 418
NlaIV	GGNNCC	2 cut(s)	24, 402
NmuCI	GTSAC	1 cut(s)	569
PagI	TCATGA	1 cut(s)	315
PaqCI	CACCTGC	1 cut(s)	487
PciSI	GCTCTTC	1 cut(s)	506
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	171, 563
PkrI	GCNGC	2 cut(s)	238, 241
PleI	GAGTC	2 cut(s)	566, 594
PpsI	GAGTC	2 cut(s)	566, 594
Psp6I	CCWGG	2 cut(s)	210, 445
PspFI	CCCAGC	1 cut(s)	404
PspGI	CCWGG	2 cut(s)	210, 445
PspN4I	GGNNCC	2 cut(s)	24, 402
PstI	CTGCAG	1 cut(s)	484
RsaI	GTAC	2 cut(s)	385, 489
RsaNI	GTAC	2 cut(s)	384, 488
RseI	CAYNNNNRTG	2 cut(s)	317, 394
SapI	GCTCTTC	1 cut(s)	506
SaqAI	TTAA	1 cut(s)	610
SatI	GCNGC	2 cut(s)	237, 240
Sau3AI	GATC	4 cut(s)	53, 147, 337, 364
ScaI	AGTACT	1 cut(s)	489
SchI	GAGTC	2 cut(s)	566, 594
ScrFI	CCNGG	2 cut(s)	212, 447
SduI	GDGCHC	2 cut(s)	327, 545
SetI	ASST	4 cut(s)	216, 244, 468, 481
SexAI	ACCWGGT	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	360, 459
SfcI	CTRYAG	1 cut(s)	480
SmiMI	CAYNNNNRTG	2 cut(s)	317, 394
SmlI	CTYRAG	2 cut(s)	544, 576
SmoI	CTYRAG	2 cut(s)	544, 576
Sse9I	AATT	5 cut(s)	91, 137, 196, 532, 556
SsiI	CCGC	2 cut(s)	51, 113
SspMI	CTAG	3 cut(s)	63, 459, 491
StyD4I	CCNGG	2 cut(s)	210, 445
TaaI	ACNGT	2 cut(s)	383, 435
TasI	AATT	5 cut(s)	91, 137, 196, 532, 556
TatI	WGTACW	2 cut(s)	383, 487
TfiI	GAWTC	2 cut(s)	171, 563
Tru1I	TTAA	1 cut(s)	610
Tru9I	TTAA	1 cut(s)	610
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	2 cut(s)	236, 239
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	5 cut(s)	163, 190, 237, 267, 491
XapI	RAATTY	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	532
XspI	CTAG	3 cut(s)	63, 459, 491
ZrmI	AGTACT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.