Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004096.1

Orthogroup ID

OG0007956

Physical Location & Seq

Genomic Coordinates Forward (+)

31381 .. 36818

Gene Structure 5438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004096.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atggagcctcctactttccaagaagctccgcgctgtgacgtctgcaaatgcagcttcaacgctttcaggcgacggcatcattgccgatcctgtgggcggacattgtgccacgaacattcagcaagccaaatggctctaccgcagtttggcatttactcaccggttagagtttgcagtgattgttttaacggctcctctcgacctgccaaaggtgatatacaagcttcttcagatggaactgattctgtaacagctgcagtttctagattggatattggtggggattcagattcaaagactaaaccaactatacagtctcagcctgtgtcagcagttatagagtgtaagtgtggaatgcccttatgtatttgtgaagctcctgccccatctgtagttgcagctcctatacagagcaaaaccacatccgcccctgcccctcattgtccaagaccaaagaaaacagaaaccgctgtaaaaaccaaaccttcaacttcaaacagcaagcacagttctgtcttcaatctcggtcaagcgaacaacggggtttctgataaaaagatggattacgaagtcaatggggagggtatgagagaagctataaagaatggtgatattgatgctgtgaagaagcttctgagtgagggtgttaatgctaattaccacgacaaacaaggactttctttgctacatttaggtatgagagaagctataaagaatggtgatattgatgctgtgaagaagcttctgagtgagggtgttaatgctaattaccacgacaaacaaggactttctttgctacatttagcagcagtctttaatcaaactgagatagtttttgccctcatggactccggaggaagcctggactacaagaatgcacagggggaaacgccactggattgtgctcctgtaacattgcaatacaagatgcggcagaagatggaagaagatagacgagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 FYVE

Protein Analysis

320

Amino Acids

34.58

Weight (kDa)

8.15

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210
fragaria_vesca	FvH4_1g09680 FvH4_1g09680
malus_domestica	MD02G1105800.v1.1 MD15G1225700.v1.1
prunus_persica	Prupe.7G189300_v2.0.a1
pyrus_communis	pycom02g08370 pycom15g20060
rosa_chinensis	RchiOBHm_Chr2g0096541
rosa_laevigata	RLG00000016647
rosa_multiflora	Rmu_sc0004096.1_g000009
rosa_roxburghii	Rroxscaffold_2G00145550
rosa_rugosa	Rorug02G0058400
rosa_samantha	Rh2AG105500 Rh2BG107800 Rh2CG109600 Rh2DG108600
rosa_wichuraiana	Rw2G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
Acc36I	ACCTGC	1 cut(s)	211
AccII	CGCG	1 cut(s)	31
AccIII	TCCGGA	1 cut(s)	851
AciI	CCGC	6 cut(s)	29, 97, 140, 426, 468, 931
AclWI	GGATC	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	39
AfiI	CCNNNNNNNGG	3 cut(s)	96, 146, 209
AgeI	ACCGGT	1 cut(s)	160
AgsI	TTSAA	5 cut(s)	58, 294, 489, 495, 520
AjnI	CCWGG	1 cut(s)	861
Alw21I	GWGCWC	1 cut(s)	907
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	81
Aor13HI	TCCGGA	1 cut(s)	851
ApeKI	GCWGC	4 cut(s)	51, 254, 398, 806
AsiGI	ACCGGT	1 cut(s)	160
Asp700I	GAANNNNTTC	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	33
AsuHPI	GGTGA	4 cut(s)	150, 224, 620, 731
BbsI	GAAGAC	1 cut(s)	508
Bbv12I	GWGCWC	1 cut(s)	907
BbvI	GCAGC	4 cut(s)	63, 241, 410, 818
BccI	CCATC	4 cut(s)	227, 394, 553, 934
BceAI	ACGGC	2 cut(s)	89, 205
BciT130I	CCWGG	1 cut(s)	863
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	2 cut(s)	255, 390
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	5 cut(s)	52, 255, 399, 807, 932
BlsI	GCNGC	5 cut(s)	53, 256, 400, 808, 933
Bme1390I	CCNGG	1 cut(s)	863
BmiI	GGNNCC	2 cut(s)	6, 193
BmrFI	CCNGG	1 cut(s)	863
BmsI	GCATC	4 cut(s)	85, 607, 718, 918
BpiI	GAAGAC	1 cut(s)	508
BsaHI	GRCGYC	1 cut(s)	39
BsaWI	WCCGGW	2 cut(s)	160, 851
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 146, 209
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	900
Bse3DI	GCAATG	2 cut(s)	79, 914
BseAI	TCCGGA	1 cut(s)	851
BseBI	CCWGG	1 cut(s)	863
BseGI	GGATG	1 cut(s)	422
BseLI	CCNNNNNNNGG	3 cut(s)	96, 146, 209
BseMI	GCAATG	2 cut(s)	79, 914
BseMII	CTCAG	4 cut(s)	332, 626, 737, 816
BseNI	ACTGG	1 cut(s)	900
BseRI	GAGGAG	1 cut(s)	184
BseXI	GCAGC	4 cut(s)	63, 241, 410, 818
Bsh1236I	CGCG	1 cut(s)	31
BshTI	ACCGGT	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	907
BsiSI	CCGG	2 cut(s)	161, 852
BslI	CCNNNNNNNGG	3 cut(s)	96, 146, 209
BsmAI	GTCTC	1 cut(s)	321
BsmI	GAATGC	2 cut(s)	360, 880
Bsp1286I	GDGCHC	1 cut(s)	907
Bsp13I	TCCGGA	1 cut(s)	851
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	6 cut(s)	29, 97, 140, 426, 468, 931
BspCNI	CTCAG	4 cut(s)	331, 627, 738, 817
BspEI	TCCGGA	1 cut(s)	851
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	6, 193
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	81
BsrDI	GCAATG	2 cut(s)	79, 914
BsrFI	RCCGGY	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	900
BssAI	RCCGGY	1 cut(s)	160
BssMI	GATC	1 cut(s)	86
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	863
Bst4CI	ACNGT	2 cut(s)	315, 509
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	124, 503
BstDEI	CTNAG	4 cut(s)	318, 635, 746, 825
BstENI	CCTNNNNNAGG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	422
BstFNI	CGCG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	861
BstSFI	CTRYAG	2 cut(s)	255, 390
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	4 cut(s)	63, 241, 410, 818
BstV2I	GAAGAC	1 cut(s)	508
BtsCI	GGATG	1 cut(s)	422
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	181, 893
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	124, 503
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	160
CspAI	ACCGGT	1 cut(s)	160
CviAII	CATG	1 cut(s)	844
DdeI	CTNAG	4 cut(s)	318, 635, 746, 825
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
EciI	GGCGGA	2 cut(s)	112, 415
Eco57I	CTGAAG	1 cut(s)	213
EcoNI	CCTNNNNNAGG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	861
FaeI	CATG	1 cut(s)	847
FatI	CATG	1 cut(s)	843
Fnu4HI	GCNGC	5 cut(s)	52, 255, 399, 807, 932
FokI	GGATG	1 cut(s)	409
Fsp4HI	GCNGC	5 cut(s)	52, 255, 399, 807, 932
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	5 cut(s)	52, 255, 399, 807, 932
HapII	CCGG	2 cut(s)	161, 852
HhaI	GCGC	1 cut(s)	33
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	847
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	3 cut(s)	222, 629, 740
HinfI	GANTC	4 cut(s)	242, 284, 290, 848
HpaII	CCGG	2 cut(s)	161, 852
HphI	GGTGA	4 cut(s)	150, 224, 620, 731
Hpy188I	TCNGA	5 cut(s)	232, 289, 550, 636, 747
Hpy188III	TCNNGA	3 cut(s)	198, 264, 852
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	495
HpyCH4III	ACNGT	2 cut(s)	315, 509
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	7 cut(s)	45, 51, 174, 257, 398, 878, 919
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	4 cut(s)	318, 635, 746, 825
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	847
HspAI	GCGC	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	851
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	6 cut(s)	4, 31, 197, 382, 406, 910
Lsp1109I	GCAGC	4 cut(s)	63, 241, 410, 818
LweI	GCATC	4 cut(s)	85, 607, 718, 918
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	3 cut(s)	35, 247, 910
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	7 cut(s)	219, 508, 637, 748, 949, 956, 959
MhlI	GDGCHC	1 cut(s)	907
MluCI	AATT	2 cut(s)	655, 766
MlyI	GAGTC	1 cut(s)	842
MnlI	CCTC	8 cut(s)	18, 205, 447, 574, 634, 745, 848, 851
MroI	TCCGGA	1 cut(s)	851
MroXI	GAANNNNTTC	1 cut(s)	241
MseI	TTAA	4 cut(s)	186, 648, 759, 816
MspA1I	CMGCKG	2 cut(s)	254, 470
MspI	CCGG	2 cut(s)	161, 852
MspR9I	CCNGG	1 cut(s)	863
Mva1269I	GAATGC	2 cut(s)	360, 880
MvaI	CCWGG	1 cut(s)	863
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	847
NlaIV	GGNNCC	2 cut(s)	6, 193
NmuCI	GTSAC	1 cut(s)	35
PctI	GAATGC	2 cut(s)	360, 880
PdmI	GAANNNNTTC	1 cut(s)	241
PfeI	GAWTC	3 cut(s)	242, 284, 290
PinAI	ACCGGT	1 cut(s)	160
PkrI	GCNGC	5 cut(s)	53, 256, 400, 808, 933
PleI	GAGTC	1 cut(s)	842
PpsI	GAGTC	1 cut(s)	842
Psp6I	CCWGG	1 cut(s)	861
PspGI	CCWGG	1 cut(s)	861
PspN4I	GGNNCC	2 cut(s)	6, 193
PstI	CTGCAG	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	254
SaqAI	TTAA	4 cut(s)	186, 648, 759, 816
SatI	GCNGC	5 cut(s)	52, 255, 399, 807, 932
Sau3AI	GATC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	842
ScrFI	CCNGG	1 cut(s)	863
SduI	GDGCHC	1 cut(s)	907
SfaNI	GCATC	4 cut(s)	85, 607, 718, 918
SfcI	CTRYAG	2 cut(s)	255, 390
Sse9I	AATT	2 cut(s)	655, 766
SsiI	CCGC	6 cut(s)	29, 97, 140, 426, 468, 931
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	861
TaaI	ACNGT	2 cut(s)	315, 509
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	199
TaqII	GACCGA	1 cut(s)	515
TasI	AATT	2 cut(s)	655, 766
TauI	GCSGC	1 cut(s)	934
TfiI	GAWTC	3 cut(s)	242, 284, 290
Tru1I	TTAA	4 cut(s)	186, 648, 759, 816
Tru9I	TTAA	4 cut(s)	186, 648, 759, 816
TscAI	CASTG	2 cut(s)	181, 900
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	4 cut(s)	51, 254, 398, 806
Tsp45I	GTSAC	1 cut(s)	35
TspRI	CASTG	2 cut(s)	181, 900
XagI	CCTNNNNNAGG	1 cut(s)	207
XbaI	TCTAGA	1 cut(s)	263
XmnI	GAANNNNTTC	1 cut(s)	241
XspI	CTAG	1 cut(s)	264
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.