Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007956

Physical Location & Seq

Genomic Coordinates Reverse (-)

5846584 .. 5850192

Gene Structure 3609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08370.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAGCCTCCTTCTTTCCAAGAAGCTCCGCGCTGCGACGTCTGCAAATGCAGCTTCAACGCTTTCAGGCGACGGCATCATTGCCGGTCATGTGGGCGGACATTGTGCCATGAACACTCGGCAAACCAAATGGCTTTACCACAGTTTGGCGTTTATTCACCCGTTAGAGTTTGCAGTGAATGTTTCAATGACTCCTCTCGAACTACCAAAGGTGACGGACAAGCTTCTTCAGATGGAGTTGATGGTGTAACAGCTTCAGTTTCTAGATTGGACATTGATGCAGATGTAGATTCAAAGGCTGAACCAACTGTACAGTATCAGCCTGTGTCAGCCAATTCAGACTGCAAGTGTGGAATGCCTTTATGTATTTGTGAAGCGCCAGCGCCATCCGTGGATGCGGCTCCCTTGCAGAGCAAAACCATATCCACCTCTGCCCCTCGGCCGACTCCAAAACCGAAGAAGACAGAAACCGCTTTAAAACCCAAAGCTTCCACGTCTAATAGCAAGCAGAGGTTGGTTGCCTCTAGTTCTGTCTTCAATCTTGGCCAAGCGAACAACGGAATTTCTGATAAAACCCAGACAGATTATGAAGCCAGTGGGGAGGGCATGAGAGAAGCTATAAAGAATAGTGACGTTGCTGCCGTCAAGAAGCTTCTGAGTGAGGGTGTTGATGCGAATTACCATGACAAGCAAGGACTTTCTTTGCTACATTTAGCAGCAGTCTTTAATCAGACTGAGATAGTTTTTGCCCTCATGGACGGTGGAGCACGCCTGGACTACAAGAATGCACAGGGGGAAACACCATTGGACTGTGCTCCCGCCACGCTCCAATACAAAATGCGACAGAAGATGGAAGAAGATAAAAGAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045732 GO:0048518 GO:0050789 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 FYVE

Protein Analysis

291

Amino Acids

31.29

Weight (kDa)

6.97

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210
fragaria_vesca	FvH4_1g09680 FvH4_1g09680
malus_domestica	MD02G1105800.v1.1 MD15G1225700.v1.1
prunus_persica	Prupe.7G189300_v2.0.a1
pyrus_communis	pycom02g08370 pycom15g20060
rosa_chinensis	RchiOBHm_Chr2g0096541
rosa_laevigata	RLG00000016647
rosa_multiflora	Rmu_sc0004096.1_g000009
rosa_roxburghii	Rroxscaffold_2G00145550
rosa_rugosa	Rorug02G0058400
rosa_samantha	Rh2AG105500 Rh2BG107800 Rh2CG109600 Rh2DG108600
rosa_wichuraiana	Rw2G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccII	CGCG	1 cut(s)	31
AciI	CCGC	5 cut(s)	29, 97, 398, 471, 819
AcoI	YGGCCR	2 cut(s)	440, 544
AcsI	RAATTY	1 cut(s)	561
AcuI	CTGAAG	2 cut(s)	213, 240
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	58, 187, 294, 538
AjiI	CACGTC	1 cut(s)	495
AjnI	CCWGG	1 cut(s)	771
AluBI	AGCT	7 cut(s)	26, 54, 224, 254, 488, 617, 652
AluI	AGCT	7 cut(s)	26, 54, 224, 254, 488, 617, 652
Alw21I	GWGCWC	2 cut(s)	769, 817
AoxI	GGCC	2 cut(s)	440, 544
ApeKI	GCWGC	4 cut(s)	33, 51, 638, 716
ApoI	RAATTY	1 cut(s)	561
AspLEI	GCGC	3 cut(s)	33, 379, 385
AsuHPI	GGTGA	2 cut(s)	150, 224
BalI	TGGCCA	1 cut(s)	546
BbsI	GAAGAC	2 cut(s)	467, 526
Bbv12I	GWGCWC	2 cut(s)	769, 817
BbvI	GCAGC	4 cut(s)	20, 63, 625, 728
BccI	CCATC	4 cut(s)	227, 236, 394, 844
BceAI	ACGGC	2 cut(s)	89, 626
BciT130I	CCWGG	1 cut(s)	773
BfaI	CTAG	2 cut(s)	264, 525
BfoI	RGCGCY	2 cut(s)	380, 386
BisI	GCNGC	5 cut(s)	34, 52, 399, 639, 717
BlsI	GCNGC	5 cut(s)	35, 53, 400, 640, 718
Bme1390I	CCNGG	1 cut(s)	773
BmgBI	CACGTC	1 cut(s)	495
BmiI	GGNNCC	2 cut(s)	6, 402
BmrFI	CCNGG	1 cut(s)	773
BmsI	GCATC	4 cut(s)	85, 268, 385, 661
BpiI	GAAGAC	2 cut(s)	467, 526
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	390, 437
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	594
Bse3DI	GCAATG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	773
BseDI	CCNNGG	2 cut(s)	390, 437
BseGI	GGATG	2 cut(s)	386, 400
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	647, 726
BseNI	ACTGG	1 cut(s)	594
BseRI	GAGGAG	1 cut(s)	184
BseX3I	CGGCCG	1 cut(s)	440
BseXI	GCAGC	4 cut(s)	20, 63, 625, 728
Bsh1236I	CGCG	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	443
BshFI	GGCC	2 cut(s)	442, 546
BsiEI	CGRYCG	1 cut(s)	443
BsiHKAI	GWGCWC	2 cut(s)	769, 817
BsiSI	CCGG	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmI	GAATGC	2 cut(s)	360, 790
BsnI	GGCC	2 cut(s)	442, 546
Bsp1286I	GDGCHC	2 cut(s)	769, 817
Bsp1407I	TGTACA	1 cut(s)	310
BspACI	CCGC	5 cut(s)	29, 97, 398, 471, 819
BspANI	GGCC	2 cut(s)	442, 546
BspCNI	CTCAG	2 cut(s)	648, 727
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	6, 402
BsrDI	GCAATG	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	594
BssAI	RCCGGY	1 cut(s)	84
BssECI	CCNNGG	2 cut(s)	390, 437
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	773
Bst4CI	ACNGT	5 cut(s)	144, 310, 315, 761, 812
BstACI	GRCGYC	1 cut(s)	39
BstAUI	TGTACA	1 cut(s)	310
BstC8I	GCNNGC	3 cut(s)	381, 506, 769
BstDEI	CTNAG	2 cut(s)	656, 735
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	386, 400
BstFNI	CGCG	1 cut(s)	31
BstH2I	RGCGCY	2 cut(s)	380, 386
BstHHI	GCGC	3 cut(s)	33, 379, 385
BstMCI	CGRYCG	1 cut(s)	443
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 51
BstNI	CCWGG	1 cut(s)	773
BstSCI	CCNGG	1 cut(s)	771
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	4 cut(s)	20, 63, 625, 728
BstV2I	GAAGAC	2 cut(s)	467, 526
BstZI	CGGCCG	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	442, 546
BtgI	CCRYGG	1 cut(s)	390
BtrI	CACGTC	1 cut(s)	495
BtsCI	GGATG	2 cut(s)	386, 400
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	181, 601
Cac8I	GCNNGC	3 cut(s)	381, 506, 769
CfoI	GCGC	3 cut(s)	33, 379, 385
Cfr10I	RCCGGY	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	5 cut(s)	90, 110, 607, 683, 754
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	2 cut(s)	656, 735
DraI	TTTAAA	1 cut(s)	477
EaeI	YGGCCR	2 cut(s)	440, 544
EagI	CGGCCG	1 cut(s)	440
EciI	GGCGGA	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	440
Eco52I	CGGCCG	1 cut(s)	440
Eco57I	CTGAAG	2 cut(s)	213, 240
EcoRII	CCWGG	1 cut(s)	771
FaeI	CATG	5 cut(s)	93, 113, 610, 686, 757
FaiI	YATR	9 cut(s)	91, 111, 364, 422, 588, 608, 620, 684, 755
FatI	CATG	5 cut(s)	89, 109, 606, 682, 753
FauI	CCCGC	1 cut(s)	826
Fnu4HI	GCNGC	5 cut(s)	34, 52, 399, 639, 717
FokI	GGATG	2 cut(s)	373, 407
Fsp4HI	GCNGC	5 cut(s)	34, 52, 399, 639, 717
FspBI	CTAG	2 cut(s)	264, 525
GlaI	GCGC	3 cut(s)	32, 378, 384
GluI	GCNGC	5 cut(s)	34, 52, 399, 639, 717
HaeII	RGCGCY	2 cut(s)	380, 386
HaeIII	GGCC	2 cut(s)	442, 546
HapII	CCGG	1 cut(s)	85
HhaI	GCGC	3 cut(s)	33, 379, 385
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	5 cut(s)	93, 113, 610, 686, 757
Hin6I	GCGC	3 cut(s)	31, 377, 383
HinP1I	GCGC	3 cut(s)	31, 377, 383
HindIII	AAGCTT	3 cut(s)	222, 486, 650
HinfI	GANTC	3 cut(s)	191, 290, 445
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	2 cut(s)	150, 224
Hpy188I	TCNGA	5 cut(s)	232, 340, 568, 657, 732
Hpy188III	TCNNGA	3 cut(s)	198, 264, 646
Hpy99I	CGWCG	2 cut(s)	41, 75
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	5 cut(s)	144, 310, 315, 761, 812
HpyCH4IV	ACGT	3 cut(s)	39, 494, 633
HpyCH4V	TGCA	7 cut(s)	45, 51, 174, 281, 345, 409, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 51
HpyF3I	CTNAG	2 cut(s)	656, 735
HpySE526I	ACGT	3 cut(s)	39, 494, 633
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	93, 113, 610, 686, 757
HspAI	GCGC	3 cut(s)	31, 377, 383
LmnI	GCTCC	6 cut(s)	4, 31, 406, 764, 820, 831
LpnPI	CCDG	9 cut(s)	52, 98, 336, 393, 590, 607, 758, 776, 785
Lsp1109I	GCAGC	4 cut(s)	20, 63, 625, 728
LweI	GCATC	4 cut(s)	85, 268, 385, 661
MaeI	CTAG	2 cut(s)	264, 525
MaeII	ACGT	3 cut(s)	39, 494, 633
MaeIII	GTNAC	3 cut(s)	212, 247, 629
MboII	GAAGA	7 cut(s)	219, 469, 472, 526, 859, 866, 869
MhlI	GDGCHC	2 cut(s)	769, 817
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	3 cut(s)	334, 561, 676
MluNI	TGGCCA	1 cut(s)	546
MlyI	GAGTC	2 cut(s)	185, 439
MnlI	CCTC	9 cut(s)	18, 205, 439, 447, 504, 532, 595, 655, 761
Mox20I	TGGCCA	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	2 cut(s)	476, 726
Msp20I	TGGCCA	1 cut(s)	546
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	773
Mva1269I	GAATGC	2 cut(s)	360, 790
MvaI	CCWGG	1 cut(s)	773
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	42, 51
NlaIII	CATG	5 cut(s)	93, 113, 610, 686, 757
NlaIV	GGNNCC	2 cut(s)	6, 402
NmeAIII	GCCGAG	2 cut(s)	98, 418
NmuCI	GTSAC	2 cut(s)	212, 629
PcsI	WCGNNNNNNNCGW	1 cut(s)	639
PctI	GAATGC	2 cut(s)	360, 790
PfeI	GAWTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	5 cut(s)	35, 53, 400, 640, 718
PleI	GAGTC	2 cut(s)	185, 439
PpsI	GAGTC	2 cut(s)	185, 439
Psp6I	CCWGG	1 cut(s)	771
PspGI	CCWGG	1 cut(s)	771
PspN4I	GGNNCC	2 cut(s)	6, 402
PsrI	GAACNNNNNNTAC	2 cut(s)	294, 326
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	476, 726
SatI	GCNGC	5 cut(s)	34, 52, 399, 639, 717
SchI	GAGTC	2 cut(s)	185, 439
ScrFI	CCNGG	1 cut(s)	773
SduI	GDGCHC	2 cut(s)	769, 817
SfaNI	GCATC	4 cut(s)	85, 268, 385, 661
Sse9I	AATT	3 cut(s)	334, 561, 676
SsiI	CCGC	5 cut(s)	29, 97, 398, 471, 819
SspMI	CTAG	2 cut(s)	264, 525
StyD4I	CCNGG	1 cut(s)	771
TaaI	ACNGT	5 cut(s)	144, 310, 315, 761, 812
TaiI	ACGT	3 cut(s)	42, 497, 636
TaqI	TCGA	1 cut(s)	199
TasI	AATT	3 cut(s)	334, 561, 676
TatI	WGTACW	1 cut(s)	310
TauI	GCSGC	1 cut(s)	401
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	476, 726
Tru9I	TTAA	2 cut(s)	476, 726
TscAI	CASTG	2 cut(s)	181, 601
TseFI	GTSAC	2 cut(s)	212, 629
TseI	GCWGC	4 cut(s)	33, 51, 638, 716
Tsp45I	GTSAC	2 cut(s)	212, 629
TspDTI	ATGAA	2 cut(s)	126, 603
TspGWI	ACGGA	3 cut(s)	231, 379, 573
TspRI	CASTG	2 cut(s)	181, 601
Van91I	CCANNNNNTGG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	561
XbaI	TCTAGA	1 cut(s)	263
XspI	CTAG	2 cut(s)	264, 525
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.