Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007956

Physical Location & Seq

Genomic Coordinates Reverse (-)

9669592 .. 9674553

Gene Structure 4962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG109600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGAGCCTCCTACTTTCCAAGAAGCTCCGCGCTGTGACGTCTGCAAATGCAGCTTCAACGCTTTCAGGCGACGGCATCATTGCCGATCCTGTGGGCGGACATTGTGCCACGAACATTCAGCAGGCCAAATGGCTCTACCGCAGTTTGGCATTTACTCACCGGTTAGAGTTTGCAGTGATTGTTTTAACGGCTCCTCTCGACCTGCCAAAGGTGATGTACAAGCTTCTTCAGATGGAACTGATTCTGTAACAGCTGCAGTTTCTAGATTAGATATTGGTGGGGATTCAGATTCAAAGACTAAACCAACTATACAGTCTCAGCCTGTGTCAGCAGTTATAGAGTGTAAGTGTGGAATGCCCTTATGTATTTGTGAAGCTCCTGCCCCATCTGTAGTTGCAGCTCCTATACAGAGCAAAACCACATCTGCCCCTGTCCCTCATTGTCCAAGACCAAAGAAAACAGAAACCGCTGTAAAAACCAAACCTTCAACTTCAAACAGCAAGTACAGTTCTGTCTTCAATCTCGGTCAAGCGAACAACGGGGTTTCTGATAAAAAGATGGATTACGAAGTCAATGGGGAGGGTATGAGAGAAGCTATAAAGAATGGTGATATTGATGCTGTGAAGAAGCTTCTGAGTGAGGGTGTTAATGCTAATTACCACGACAAACAAGGACTTTCTTTGCTACATTTAGCAGCAGTCTTTAATCAAACTGAGATAGTTTTTGCCCTCATGGACTCCGGAGGAAGCCTGGACTACAAGAATGCACAGGGTAATTTTCTTGGCCCTCTTAATATGTACATTTTAGTTGAATGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 FYVE

Protein Analysis

273

Amino Acids

29.25

Weight (kDa)

7.89

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FYVE	PF01363	7 - 63	2.4e-15	FYVE zinc finger
Ank_2	PF12796	199 - 252	2.1e-07	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210
fragaria_vesca	FvH4_1g09680 FvH4_1g09680
malus_domestica	MD02G1105800.v1.1 MD15G1225700.v1.1
prunus_persica	Prupe.7G189300_v2.0.a1
pyrus_communis	pycom02g08370 pycom15g20060
rosa_chinensis	RchiOBHm_Chr2g0096541
rosa_laevigata	RLG00000016647
rosa_multiflora	Rmu_sc0004096.1_g000009
rosa_roxburghii	Rroxscaffold_2G00145550
rosa_rugosa	Rorug02G0058400
rosa_samantha	Rh2AG105500 Rh2BG107800 Rh2CG109600 Rh2DG108600
rosa_wichuraiana	Rw2G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
Acc36I	ACCTGC	1 cut(s)	211
AccII	CGCG	1 cut(s)	31
AccIII	TCCGGA	1 cut(s)	740
AciI	CCGC	4 cut(s)	29, 97, 140, 468
AclWI	GGATC	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	4 cut(s)	219, 506, 800, 817
AfiI	CCNNNNNNNGG	3 cut(s)	96, 146, 209
AgeI	ACCGGT	1 cut(s)	160
AgsI	TTSAA	6 cut(s)	58, 294, 489, 495, 520, 812
AjnI	CCWGG	1 cut(s)	750
AluBI	AGCT	8 cut(s)	26, 54, 224, 254, 377, 401, 596, 631
AluI	AGCT	8 cut(s)	26, 54, 224, 254, 377, 401, 596, 631
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	81
Aor13HI	TCCGGA	1 cut(s)	740
AoxI	GGCC	2 cut(s)	124, 784
ApeKI	GCWGC	4 cut(s)	51, 254, 398, 695
AsiGI	ACCGGT	1 cut(s)	160
Asp700I	GAANNNNTTC	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	785
AsuHPI	GGTGA	3 cut(s)	150, 224, 620
BbsI	GAAGAC	1 cut(s)	508
BbvI	GCAGC	4 cut(s)	63, 241, 410, 707
BccI	CCATC	3 cut(s)	227, 394, 553
BceAI	ACGGC	2 cut(s)	89, 205
BciT130I	CCWGG	1 cut(s)	752
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	2 cut(s)	255, 390
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	4 cut(s)	52, 255, 399, 696
BlsI	GCNGC	4 cut(s)	53, 256, 400, 697
Bme1390I	CCNGG	1 cut(s)	752
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	2 cut(s)	6, 193
BmrFI	CCNGG	1 cut(s)	752
BmsI	GCATC	2 cut(s)	85, 607
BpiI	GAAGAC	1 cut(s)	508
BsaHI	GRCGYC	1 cut(s)	39
BsaWI	WCCGGW	2 cut(s)	160, 740
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 146, 209
Bse118I	RCCGGY	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	79
BseAI	TCCGGA	1 cut(s)	740
BseBI	CCWGG	1 cut(s)	752
BseLI	CCNNNNNNNGG	3 cut(s)	96, 146, 209
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	3 cut(s)	332, 626, 705
BseRI	GAGGAG	1 cut(s)	184
BseXI	GCAGC	4 cut(s)	63, 241, 410, 707
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	126, 786
BshTI	ACCGGT	1 cut(s)	160
BsiSI	CCGG	2 cut(s)	161, 741
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	3 cut(s)	96, 146, 209
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	419
BsmI	GAATGC	2 cut(s)	360, 769
BsnI	GGCC	2 cut(s)	126, 786
Bsp13I	TCCGGA	1 cut(s)	740
Bsp1407I	TGTACA	3 cut(s)	217, 798, 815
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	4 cut(s)	29, 97, 140, 468
BspANI	GGCC	2 cut(s)	126, 786
BspCNI	CTCAG	3 cut(s)	331, 627, 706
BspEI	TCCGGA	1 cut(s)	740
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	6, 193
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	160
BsrGI	TGTACA	3 cut(s)	217, 798, 815
BssAI	RCCGGY	1 cut(s)	160
BssMI	GATC	1 cut(s)	86
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	752
Bst4CI	ACNGT	2 cut(s)	315, 509
BstACI	GRCGYC	1 cut(s)	39
BstAUI	TGTACA	3 cut(s)	217, 798, 815
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	3 cut(s)	318, 635, 714
BstENI	CCTNNNNNAGG	1 cut(s)	207
BstFNI	CGCG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	750
BstSFI	CTRYAG	2 cut(s)	255, 390
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	4 cut(s)	63, 241, 410, 707
BstV2I	GAAGAC	1 cut(s)	508
BsuRI	GGCC	2 cut(s)	126, 786
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	124
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	785
Csp6I	GTAC	4 cut(s)	218, 505, 799, 816
CspAI	ACCGGT	1 cut(s)	160
CviAII	CATG	1 cut(s)	733
CviQI	GTAC	4 cut(s)	218, 505, 799, 816
DdeI	CTNAG	3 cut(s)	318, 635, 714
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
EciI	GGCGGA	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	213
EcoNI	CCTNNNNNAGG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	750
FaeI	CATG	1 cut(s)	736
FaiI	YATR	9 cut(s)	311, 338, 364, 407, 587, 599, 734, 797, 820
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	1 cut(s)	732
Fnu4HI	GCNGC	4 cut(s)	52, 255, 399, 696
Fsp4HI	GCNGC	4 cut(s)	52, 255, 399, 696
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	4 cut(s)	52, 255, 399, 696
HaeIII	GGCC	2 cut(s)	126, 786
HapII	CCGG	2 cut(s)	161, 741
HhaI	GCGC	1 cut(s)	33
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	736
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	2 cut(s)	222, 629
HinfI	GANTC	4 cut(s)	242, 284, 290, 737
HpaII	CCGG	2 cut(s)	161, 741
HphI	GGTGA	3 cut(s)	150, 224, 620
Hpy188I	TCNGA	4 cut(s)	232, 289, 550, 636
Hpy188III	TCNNGA	3 cut(s)	198, 264, 741
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	495
HpyCH4III	ACNGT	2 cut(s)	315, 509
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	6 cut(s)	45, 51, 174, 257, 398, 767
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	3 cut(s)	318, 635, 714
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	736
HspAI	GCGC	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	740
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	5 cut(s)	4, 31, 197, 382, 406
Lsp1109I	GCAGC	4 cut(s)	63, 241, 410, 707
LweI	GCATC	2 cut(s)	85, 607
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	35, 247
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	3 cut(s)	219, 508, 637
MluCI	AATT	2 cut(s)	655, 775
MlyI	GAGTC	1 cut(s)	731
MnlI	CCTC	8 cut(s)	18, 205, 447, 574, 634, 737, 740, 798
MroI	TCCGGA	1 cut(s)	740
MroXI	GAANNNNTTC	1 cut(s)	241
MseI	TTAA	4 cut(s)	186, 648, 705, 792
MspA1I	CMGCKG	2 cut(s)	254, 470
MspI	CCGG	2 cut(s)	161, 741
MspR9I	CCNGG	1 cut(s)	752
Mva1269I	GAATGC	2 cut(s)	360, 769
MvaI	CCWGG	1 cut(s)	752
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	736
NlaIV	GGNNCC	2 cut(s)	6, 193
NmuCI	GTSAC	1 cut(s)	35
PctI	GAATGC	2 cut(s)	360, 769
PdmI	GAANNNNTTC	1 cut(s)	241
PfeI	GAWTC	3 cut(s)	242, 284, 290
PinAI	ACCGGT	1 cut(s)	160
PkrI	GCNGC	4 cut(s)	53, 256, 400, 697
PleI	GAGTC	1 cut(s)	731
PpsI	GAGTC	1 cut(s)	731
Psp6I	CCWGG	1 cut(s)	750
PspGI	CCWGG	1 cut(s)	750
PspN4I	GGNNCC	2 cut(s)	6, 193
PspPI	GGNCC	1 cut(s)	785
PstI	CTGCAG	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	4 cut(s)	219, 506, 800, 817
RsaNI	GTAC	4 cut(s)	218, 505, 799, 816
SaqAI	TTAA	4 cut(s)	186, 648, 705, 792
SatI	GCNGC	4 cut(s)	52, 255, 399, 696
Sau3AI	GATC	1 cut(s)	86
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	1 cut(s)	752
SfaNI	GCATC	2 cut(s)	85, 607
SfcI	CTRYAG	2 cut(s)	255, 390
Sse9I	AATT	2 cut(s)	655, 775
SsiI	CCGC	4 cut(s)	29, 97, 140, 468
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	750
TaaI	ACNGT	2 cut(s)	315, 509
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	199
TaqII	GACCGA	1 cut(s)	515
TasI	AATT	2 cut(s)	655, 775
TatI	WGTACW	4 cut(s)	217, 504, 798, 815
TfiI	GAWTC	3 cut(s)	242, 284, 290
Tru1I	TTAA	4 cut(s)	186, 648, 705, 792
Tru9I	TTAA	4 cut(s)	186, 648, 705, 792
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	4 cut(s)	51, 254, 398, 695
Tsp45I	GTSAC	1 cut(s)	35
TspRI	CASTG	1 cut(s)	181
XagI	CCTNNNNNAGG	1 cut(s)	207
XbaI	TCTAGA	1 cut(s)	263
XmnI	GAANNNNTTC	1 cut(s)	241
XspI	CTAG	1 cut(s)	264
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.