Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007956

Physical Location & Seq

Genomic Coordinates Reverse (-)

8576542 .. 8580601

Gene Structure 4060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1105800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGAGCCTCCTTCTTTCCAAGAAGCTCCGCGCTGCGACGTCTGCAAATGCAGCTTCAACGCTTTCAGGCGACGGCATCATTGCCGATCATGTGGGCGGACATTGTGCCACGAACACTCGGCAAACCAAACGGCTTTGCCACAGTTTGGCATTTATTCACCCGTTAGAGTTTGCAGTGAATGTTTCAATGACTGCTCTCGAACTACCAAAGGTGACGGACAAGCTTCTTCAGATGGAGTTGATGGTGTAACAGCTTCAGTTTCTAGATTGGACATTGATGCAGATGTAGATTCAAAGGCTGAACCAACTGTACAGTATCAGCCTGTGTCAGCCAATTCAGACTGCAAGTGTGGAATGCCTTTATGTATTTGTGAAGCGCCAGCGCCATCCGTGGATGCAGCTCCCTTACAGAGCAAAACCATATCCACCTCTGCCCCTCGGCCGACTCCAAAACCGAAGAAGACAGAAACTACTTTAAAACCCAAAGCTTCCACGTCTAATAGCAAGCAGAGTTCTGTCTTCAATCTTGGCCAAGCAAACAATGGAATTTCTGATAAAACCCAGACAGATTATGAAGCCAGTGGGGAGGGTATGAGAGAAGCTATAAAGAATAGTGACGTTGCTGCCGTCAAGAAGCTTCTGAGTGAGGGTGTTGATGCGAATTACCATGACAAGCAAGGACTTTCTTTGCTACATTTAGCTGCAGTCTTTAATCAGACTGAGATAGTTTTTGCCCTCATGGACGGTGGAGCACGCCTGGACTACAAGAATGCACAGGGGGAAACACCATTGGACTGTGCTCCCGCCACGCTCCAGTACAAAATGCGACAGAAGATGGAAGAAGATAAAAGAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045732 GO:0048518 GO:0050789 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 FYVE

Protein Analysis

286

Amino Acids

30.79

Weight (kDa)

6.59

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FYVE	PF01363	7 - 66	5.3e-15	FYVE zinc finger
Ank_2	PF12796	201 - 267	3.3e-09	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210
fragaria_vesca	FvH4_1g09680 FvH4_1g09680
malus_domestica	MD02G1105800.v1.1 MD15G1225700.v1.1
prunus_persica	Prupe.7G189300_v2.0.a1
pyrus_communis	pycom02g08370 pycom15g20060
rosa_chinensis	RchiOBHm_Chr2g0096541
rosa_laevigata	RLG00000016647
rosa_multiflora	Rmu_sc0004096.1_g000009
rosa_roxburghii	Rroxscaffold_2G00145550
rosa_rugosa	Rorug02G0058400
rosa_samantha	Rh2AG105500 Rh2BG107800 Rh2CG109600 Rh2DG108600
rosa_wichuraiana	Rw2G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccII	CGCG	1 cut(s)	31
AciI	CCGC	3 cut(s)	29, 97, 804
AcoI	YGGCCR	2 cut(s)	440, 529
AcsI	RAATTY	1 cut(s)	546
AcuI	CTGAAG	2 cut(s)	213, 240
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	312, 818
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	58, 187, 294, 523
AjiI	CACGTC	1 cut(s)	495
AjnI	CCWGG	1 cut(s)	756
AluBI	AGCT	9 cut(s)	26, 54, 224, 254, 401, 488, 602, 637, 701
AluI	AGCT	9 cut(s)	26, 54, 224, 254, 401, 488, 602, 637, 701
Alw21I	GWGCWC	2 cut(s)	754, 802
AoxI	GGCC	2 cut(s)	440, 529
ApeKI	GCWGC	5 cut(s)	33, 51, 398, 623, 701
ApoI	RAATTY	1 cut(s)	546
AspLEI	GCGC	3 cut(s)	33, 379, 385
AsuHPI	GGTGA	2 cut(s)	150, 224
BalI	TGGCCA	1 cut(s)	531
BbsI	GAAGAC	2 cut(s)	467, 511
Bbv12I	GWGCWC	2 cut(s)	754, 802
BbvI	GCAGC	5 cut(s)	20, 63, 410, 610, 688
BccI	CCATC	4 cut(s)	227, 236, 394, 829
BceAI	ACGGC	3 cut(s)	89, 147, 611
BciT130I	CCWGG	1 cut(s)	758
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	702
BfoI	RGCGCY	2 cut(s)	380, 386
BisI	GCNGC	5 cut(s)	34, 52, 399, 624, 702
BlsI	GCNGC	5 cut(s)	35, 53, 400, 625, 703
Bme1390I	CCNGG	1 cut(s)	758
BmgBI	CACGTC	1 cut(s)	495
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	758
BmsI	GCATC	4 cut(s)	85, 268, 385, 646
BpiI	GAAGAC	2 cut(s)	467, 511
BpmI	CTGGAG	1 cut(s)	797
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	390, 437
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	579, 814
Bse3DI	GCAATG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	758
BseDI	CCNNGG	2 cut(s)	390, 437
BseGI	GGATG	2 cut(s)	386, 400
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	632, 711
BseNI	ACTGG	2 cut(s)	579, 814
BseX3I	CGGCCG	1 cut(s)	440
BseXI	GCAGC	5 cut(s)	20, 63, 410, 610, 688
Bsh1236I	CGCG	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	443
BshFI	GGCC	2 cut(s)	442, 531
BsiEI	CGRYCG	1 cut(s)	443
BsiHKAI	GWGCWC	2 cut(s)	754, 802
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmI	GAATGC	2 cut(s)	360, 775
BsnI	GGCC	2 cut(s)	442, 531
Bsp1286I	GDGCHC	2 cut(s)	754, 802
Bsp1407I	TGTACA	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	3 cut(s)	29, 97, 804
BspANI	GGCC	2 cut(s)	442, 531
BspCNI	CTCAG	2 cut(s)	633, 712
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	706
BsrDI	GCAATG	1 cut(s)	79
BsrGI	TGTACA	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	579, 814
BssECI	CCNNGG	2 cut(s)	390, 437
BssMI	GATC	1 cut(s)	86
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	758
Bst4CI	ACNGT	5 cut(s)	144, 310, 315, 746, 797
BstACI	GRCGYC	1 cut(s)	39
BstAUI	TGTACA	1 cut(s)	310
BstC8I	GCNNGC	3 cut(s)	381, 506, 754
BstDEI	CTNAG	2 cut(s)	641, 720
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	386, 400
BstFNI	CGCG	1 cut(s)	31
BstH2I	RGCGCY	2 cut(s)	380, 386
BstHHI	GCGC	3 cut(s)	33, 379, 385
BstKTI	GATC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	86
BstMCI	CGRYCG	1 cut(s)	443
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 51
BstNI	CCWGG	1 cut(s)	758
BstSCI	CCNGG	1 cut(s)	756
BstSFI	CTRYAG	1 cut(s)	702
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	5 cut(s)	20, 63, 410, 610, 688
BstV2I	GAAGAC	2 cut(s)	467, 511
BstZI	CGGCCG	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	442, 531
BtgI	CCRYGG	1 cut(s)	390
BtrI	CACGTC	1 cut(s)	495
BtsCI	GGATG	2 cut(s)	386, 400
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	181, 586
Cac8I	GCNNGC	3 cut(s)	381, 506, 754
CfoI	GCGC	3 cut(s)	33, 379, 385
Csp6I	GTAC	2 cut(s)	311, 817
CviAII	CATG	3 cut(s)	90, 668, 739
CviQI	GTAC	2 cut(s)	311, 817
DdeI	CTNAG	2 cut(s)	641, 720
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
DraI	TTTAAA	1 cut(s)	477
EaeI	YGGCCR	2 cut(s)	440, 529
EagI	CGGCCG	1 cut(s)	440
EciI	GGCGGA	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	440
Eco52I	CGGCCG	1 cut(s)	440
Eco57I	CTGAAG	2 cut(s)	213, 240
EcoRII	CCWGG	1 cut(s)	756
FaeI	CATG	3 cut(s)	93, 671, 742
FaiI	YATR	8 cut(s)	91, 364, 422, 573, 593, 605, 669, 740
FatI	CATG	3 cut(s)	89, 667, 738
FauI	CCCGC	1 cut(s)	811
Fnu4HI	GCNGC	5 cut(s)	34, 52, 399, 624, 702
FokI	GGATG	2 cut(s)	373, 407
Fsp4HI	GCNGC	5 cut(s)	34, 52, 399, 624, 702
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	3 cut(s)	32, 378, 384
GluI	GCNGC	5 cut(s)	34, 52, 399, 624, 702
GsuI	CTGGAG	1 cut(s)	797
HaeII	RGCGCY	2 cut(s)	380, 386
HaeIII	GGCC	2 cut(s)	442, 531
HhaI	GCGC	3 cut(s)	33, 379, 385
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	93, 671, 742
Hin6I	GCGC	3 cut(s)	31, 377, 383
HinP1I	GCGC	3 cut(s)	31, 377, 383
HindIII	AAGCTT	3 cut(s)	222, 486, 635
HinfI	GANTC	2 cut(s)	290, 445
HphI	GGTGA	2 cut(s)	150, 224
Hpy188I	TCNGA	5 cut(s)	232, 340, 553, 642, 717
Hpy188III	TCNNGA	3 cut(s)	198, 264, 631
Hpy99I	CGWCG	2 cut(s)	41, 75
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	5 cut(s)	144, 310, 315, 746, 797
HpyCH4IV	ACGT	3 cut(s)	39, 494, 618
HpyCH4V	TGCA	8 cut(s)	45, 51, 174, 281, 345, 398, 704, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 51
HpyF3I	CTNAG	2 cut(s)	641, 720
HpySE526I	ACGT	3 cut(s)	39, 494, 618
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	93, 671, 742
HspAI	GCGC	3 cut(s)	31, 377, 383
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	6 cut(s)	4, 31, 406, 749, 805, 816
LpnPI	CCDG	9 cut(s)	52, 336, 393, 575, 592, 743, 761, 770, 827
Lsp1109I	GCAGC	5 cut(s)	20, 63, 410, 610, 688
LweI	GCATC	4 cut(s)	85, 268, 385, 646
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	3 cut(s)	39, 494, 618
MaeIII	GTNAC	3 cut(s)	212, 247, 614
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	7 cut(s)	219, 469, 472, 511, 844, 851, 854
MhlI	GDGCHC	2 cut(s)	754, 802
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	3 cut(s)	334, 546, 661
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	6 cut(s)	18, 439, 447, 580, 640, 746
Mox20I	TGGCCA	1 cut(s)	531
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	2 cut(s)	476, 711
Msp20I	TGGCCA	1 cut(s)	531
MspR9I	CCNGG	1 cut(s)	758
Mva1269I	GAATGC	2 cut(s)	360, 775
MvaI	CCWGG	1 cut(s)	758
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	42, 51
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	3 cut(s)	93, 671, 742
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	2 cut(s)	98, 418
NmuCI	GTSAC	2 cut(s)	212, 614
PcsI	WCGNNNNNNNCGW	1 cut(s)	624
PctI	GAATGC	2 cut(s)	360, 775
PfeI	GAWTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	5 cut(s)	35, 53, 400, 625, 703
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	756
PspGI	CCWGG	1 cut(s)	756
PspN4I	GGNNCC	1 cut(s)	6
PsrI	GAACNNNNNNTAC	2 cut(s)	294, 326
PstI	CTGCAG	1 cut(s)	706
RsaI	GTAC	2 cut(s)	312, 818
RsaNI	GTAC	2 cut(s)	311, 817
SaqAI	TTAA	2 cut(s)	476, 711
SatI	GCNGC	5 cut(s)	34, 52, 399, 624, 702
Sau3AI	GATC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	758
SduI	GDGCHC	2 cut(s)	754, 802
SfaNI	GCATC	4 cut(s)	85, 268, 385, 646
SfcI	CTRYAG	1 cut(s)	702
Sse9I	AATT	3 cut(s)	334, 546, 661
SsiI	CCGC	3 cut(s)	29, 97, 804
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	756
TaaI	ACNGT	5 cut(s)	144, 310, 315, 746, 797
TaiI	ACGT	3 cut(s)	42, 497, 621
TaqI	TCGA	1 cut(s)	199
TasI	AATT	3 cut(s)	334, 546, 661
TatI	WGTACW	2 cut(s)	310, 816
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	476, 711
Tru9I	TTAA	2 cut(s)	476, 711
TscAI	CASTG	2 cut(s)	181, 586
TseFI	GTSAC	2 cut(s)	212, 614
TseI	GCWGC	5 cut(s)	33, 51, 398, 623, 701
Tsp45I	GTSAC	2 cut(s)	212, 614
TspDTI	ATGAA	1 cut(s)	588
TspGWI	ACGGA	2 cut(s)	231, 379
TspRI	CASTG	2 cut(s)	181, 586
Van91I	CCANNNNNTGG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	546
XbaI	TCTAGA	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XspI	CTAG	1 cut(s)	264
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.