Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007956

Physical Location & Seq

Genomic Coordinates Reverse (-)

8554222 .. 8558368

Gene Structure 4147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016647

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGAGCCTCCTACTTTCCAAGAAGCTCCGCGCTGTGACGTCTGCAAATGCAGCTTCAACGCTTTCAGGCGACGGCATCATTGCCGATCCTGTGGGCGGACATTGTGCCACGAACATTCAGCAAGCCAAATGGCTCTACCGCAGTTTGGCATTTACTCACCGGTTAGAGTTTGCAGTGATTGTTTTAACGGCTCCTCTCGACCTGCCAAAGGTGATGTACAAGCTTCTTCAGATGGAACTGATTCTGTAACAGCTGCAGTTTCTAGATTGGATATTGGTGGGGATTCAGATTCAAAGGCTAAACCAACTATACAGTCTCAGCCTGTGTCAGCAGTTATAGAGTGTAAGTGTGGAATGCCCTTATGTATTTGTGAAGCTCCTGCCCCATCTGTAGTTGCAGCTCCTATACAGAGCAAAACCACATCCGCCCCGGTCCCTCATTGTCCAAGACCAAAGAAAACAGAAACCGCTGTAAAAACCAAACCTTCAACTTCAAACAGCAAGCACAGTTCTGTCTTCAATCTCGGTCAAGCTAGCAACGGGGTTTCTGATAAAAAGATGGATTACGAAGTCAATGGGGAGGGTATGAGAGAAGCTATAAAGAATGGTGATATTGATGCTGTGAAGAAGCTTCTGAGTGAGGGTGTTAATGCTAATTACCACGACAAACAAGGACTTTCTTTGCTACATTTAGCAGCAGTCTTTAATCAAACTGAGATAGTTTTTGCCCTCATGGACTCTGGAGGAAGCCTGGACTACAAGAATGCACAGGGGGAAACACCACTGGATTGTGCTCCTGTAACATTGCAATACAAGATGCGGCAGAAGATGGAAGAAGATAGACGAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 FYVE

Protein Analysis

284

Amino Acids

30.51

Weight (kDa)

8.16

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FYVE	PF01363	7 - 63	1.7e-15	FYVE zinc finger
Ank_2	PF12796	198 - 265	3e-10	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210
fragaria_vesca	FvH4_1g09680 FvH4_1g09680
malus_domestica	MD02G1105800.v1.1 MD15G1225700.v1.1
prunus_persica	Prupe.7G189300_v2.0.a1
pyrus_communis	pycom02g08370 pycom15g20060
rosa_chinensis	RchiOBHm_Chr2g0096541
rosa_laevigata	RLG00000016647
rosa_multiflora	Rmu_sc0004096.1_g000009
rosa_roxburghii	Rroxscaffold_2G00145550
rosa_rugosa	Rorug02G0058400
rosa_samantha	Rh2AG105500 Rh2BG107800 Rh2CG109600 Rh2DG108600
rosa_wichuraiana	Rw2G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
Acc36I	ACCTGC	1 cut(s)	211
AccII	CGCG	1 cut(s)	31
AciI	CCGC	6 cut(s)	29, 97, 140, 426, 468, 820
AclWI	GGATC	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	3 cut(s)	96, 146, 209
AgeI	ACCGGT	1 cut(s)	160
AgsI	TTSAA	5 cut(s)	58, 294, 489, 495, 520
AjnI	CCWGG	1 cut(s)	750
AluBI	AGCT	9 cut(s)	26, 54, 224, 254, 377, 401, 533, 596, 631
AluI	AGCT	9 cut(s)	26, 54, 224, 254, 377, 401, 533, 596, 631
Alw21I	GWGCWC	1 cut(s)	796
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	81
ApeKI	GCWGC	4 cut(s)	51, 254, 398, 695
AsiGI	ACCGGT	1 cut(s)	160
Asp700I	GAANNNNTTC	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	433
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	3 cut(s)	150, 224, 620
AsuNHI	GCTAGC	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	433
BbsI	GAAGAC	1 cut(s)	508
Bbv12I	GWGCWC	1 cut(s)	796
BbvI	GCAGC	4 cut(s)	63, 241, 410, 707
BccI	CCATC	4 cut(s)	227, 394, 553, 823
BceAI	ACGGC	2 cut(s)	89, 205
BciT130I	CCWGG	1 cut(s)	752
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	2 cut(s)	264, 534
BfmI	CTRYAG	2 cut(s)	255, 390
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	5 cut(s)	52, 255, 399, 696, 821
BlsI	GCNGC	5 cut(s)	53, 256, 400, 697, 822
Bme1390I	CCNGG	2 cut(s)	431, 752
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	3 cut(s)	6, 193, 435
BmrFI	CCNGG	2 cut(s)	431, 752
BmsI	GCATC	3 cut(s)	85, 607, 807
BmtI	GCTAGC	1 cut(s)	537
BpiI	GAAGAC	1 cut(s)	508
BpmI	CTGGAG	1 cut(s)	762
BpuMI	CCSGG	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	3 cut(s)	96, 146, 209
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	789
Bse3DI	GCAATG	2 cut(s)	79, 803
BseBI	CCWGG	1 cut(s)	752
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	1 cut(s)	422
BseLI	CCNNNNNNNGG	3 cut(s)	96, 146, 209
BseMI	GCAATG	2 cut(s)	79, 803
BseMII	CTCAG	3 cut(s)	332, 626, 705
BseNI	ACTGG	1 cut(s)	789
BseRI	GAGGAG	1 cut(s)	184
BseXI	GCAGC	4 cut(s)	63, 241, 410, 707
Bsh1236I	CGCG	1 cut(s)	31
BshTI	ACCGGT	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	796
BsiSI	CCGG	2 cut(s)	161, 431
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	3 cut(s)	96, 146, 209
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	419
BsmI	GAATGC	2 cut(s)	360, 769
Bsp1286I	GDGCHC	1 cut(s)	796
Bsp1407I	TGTACA	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	6 cut(s)	29, 97, 140, 426, 468, 820
BspCNI	CTCAG	3 cut(s)	331, 627, 706
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	3 cut(s)	6, 193, 435
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	211
BspOI	GCTAGC	1 cut(s)	537
BspPI	GGATC	1 cut(s)	81
BsrDI	GCAATG	2 cut(s)	79, 803
BsrFI	RCCGGY	1 cut(s)	160
BsrGI	TGTACA	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	789
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	1 cut(s)	86
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	752
Bst4CI	ACNGT	2 cut(s)	315, 509
BstACI	GRCGYC	1 cut(s)	39
BstAUI	TGTACA	1 cut(s)	217
BstC8I	GCNNGC	3 cut(s)	124, 503, 535
BstDEI	CTNAG	3 cut(s)	318, 635, 714
BstENI	CCTNNNNNAGG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	422
BstFNI	CGCG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	752
BstSCI	CCNGG	2 cut(s)	429, 750
BstSFI	CTRYAG	2 cut(s)	255, 390
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	4 cut(s)	63, 241, 410, 707
BstV2I	GAAGAC	1 cut(s)	508
BtsCI	GGATG	1 cut(s)	422
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	181, 782
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	3 cut(s)	124, 503, 535
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	218
CspAI	ACCGGT	1 cut(s)	160
CviAII	CATG	1 cut(s)	733
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	3 cut(s)	318, 635, 714
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
EciI	GGCGGA	2 cut(s)	112, 415
Eco47I	GGWCC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	213
EcoNI	CCTNNNNNAGG	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	750
FaeI	CATG	1 cut(s)	736
FaiI	YATR	7 cut(s)	311, 338, 364, 407, 587, 599, 734
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	1 cut(s)	732
Fnu4HI	GCNGC	5 cut(s)	52, 255, 399, 696, 821
FokI	GGATG	1 cut(s)	409
Fsp4HI	GCNGC	5 cut(s)	52, 255, 399, 696, 821
FspBI	CTAG	2 cut(s)	264, 534
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	5 cut(s)	52, 255, 399, 696, 821
GsuI	CTGGAG	1 cut(s)	762
HapII	CCGG	2 cut(s)	161, 431
HhaI	GCGC	1 cut(s)	33
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	736
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HindIII	AAGCTT	2 cut(s)	222, 629
HinfI	GANTC	4 cut(s)	242, 284, 290, 737
HpaII	CCGG	2 cut(s)	161, 431
HphI	GGTGA	3 cut(s)	150, 224, 620
Hpy188I	TCNGA	4 cut(s)	232, 289, 550, 636
Hpy188III	TCNNGA	3 cut(s)	198, 264, 741
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	495
HpyCH4III	ACNGT	2 cut(s)	315, 509
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	7 cut(s)	45, 51, 174, 257, 398, 767, 808
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	3 cut(s)	318, 635, 714
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	736
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	6 cut(s)	4, 31, 197, 382, 406, 799
Lsp1109I	GCAGC	4 cut(s)	63, 241, 410, 707
LweI	GCATC	3 cut(s)	85, 607, 807
MaeI	CTAG	2 cut(s)	264, 534
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	3 cut(s)	35, 247, 799
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	6 cut(s)	219, 508, 637, 838, 845, 848
MhlI	GDGCHC	1 cut(s)	796
MluCI	AATT	1 cut(s)	655
MlyI	GAGTC	1 cut(s)	731
MnlI	CCTC	7 cut(s)	18, 205, 447, 574, 634, 737, 740
MroXI	GAANNNNTTC	1 cut(s)	241
MseI	TTAA	3 cut(s)	186, 648, 705
MspA1I	CMGCKG	2 cut(s)	254, 470
MspI	CCGG	2 cut(s)	161, 431
MspR9I	CCNGG	2 cut(s)	431, 752
Mva1269I	GAATGC	2 cut(s)	360, 769
MvaI	CCWGG	1 cut(s)	752
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	51
NciI	CCSGG	1 cut(s)	431
NdeII	GATC	1 cut(s)	86
NheI	GCTAGC	1 cut(s)	533
NlaIII	CATG	1 cut(s)	736
NlaIV	GGNNCC	3 cut(s)	6, 193, 435
NmuCI	GTSAC	1 cut(s)	35
PctI	GAATGC	2 cut(s)	360, 769
PdmI	GAANNNNTTC	1 cut(s)	241
PfeI	GAWTC	3 cut(s)	242, 284, 290
PinAI	ACCGGT	1 cut(s)	160
PkrI	GCNGC	5 cut(s)	53, 256, 400, 697, 822
PleI	GAGTC	1 cut(s)	731
PpsI	GAGTC	1 cut(s)	731
Psp6I	CCWGG	1 cut(s)	750
PspGI	CCWGG	1 cut(s)	750
PspN4I	GGNNCC	3 cut(s)	6, 193, 435
PspPI	GGNCC	1 cut(s)	433
PstI	CTGCAG	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	186, 648, 705
SatI	GCNGC	5 cut(s)	52, 255, 399, 696, 821
Sau3AI	GATC	1 cut(s)	86
Sau96I	GGNCC	1 cut(s)	433
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	2 cut(s)	431, 752
SduI	GDGCHC	1 cut(s)	796
SfaNI	GCATC	3 cut(s)	85, 607, 807
SfcI	CTRYAG	2 cut(s)	255, 390
SinI	GGWCC	1 cut(s)	433
Sse9I	AATT	1 cut(s)	655
SsiI	CCGC	6 cut(s)	29, 97, 140, 426, 468, 820
SspMI	CTAG	2 cut(s)	264, 534
StyD4I	CCNGG	2 cut(s)	429, 750
TaaI	ACNGT	2 cut(s)	315, 509
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	199
TaqII	GACCGA	1 cut(s)	515
TasI	AATT	1 cut(s)	655
TatI	WGTACW	1 cut(s)	217
TauI	GCSGC	1 cut(s)	823
TfiI	GAWTC	3 cut(s)	242, 284, 290
Tru1I	TTAA	3 cut(s)	186, 648, 705
Tru9I	TTAA	3 cut(s)	186, 648, 705
TscAI	CASTG	2 cut(s)	181, 789
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	4 cut(s)	51, 254, 398, 695
Tsp45I	GTSAC	1 cut(s)	35
TspRI	CASTG	2 cut(s)	181, 789
VpaK11BI	GGWCC	1 cut(s)	433
XagI	CCTNNNNNAGG	1 cut(s)	207
XbaI	TCTAGA	1 cut(s)	263
XmnI	GAANNNNTTC	1 cut(s)	241
XspI	CTAG	2 cut(s)	264, 534
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.