FvH4_1g09680

Protein present in Fab1, YOTB, Vac1, and EEA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0007956
Physical Location & Seq
Reverse (-)
5192747 .. 5197020
4274 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09680.t2

Sequence Viewer

Length: 852 bp
ATGGAGCCTCCATCTTTTCAAGAAGCTCCGCGCTGTGACGTCTGCAAATGCAGCTTCAACGCTTTCCGGCGACGGCATCATTGCCGATCCTGTGGGCGGACATTGTGCCACGAACATTCATCAAGCCAAATGGCTCTACCTCAGTTTGGCCTTTACTCACCGGTTAGAGTTTGCAGTGATTGTTTTAACGGCTCCTCTCGATCTGCCATAGGTGATGTACAAGCTTCTTCAGATGGAACTGATTCTATAACAGCTTCAGTTTCTACATTGGATATAGGTGGAGATGCAGATCCAAAGACTAAACCAACTATGCAGTCTCAGCCTGCTTCAGCAGTTTTAGAGTGTAAGTGCAGAATGCCCTTGTGTATTTGTGAAGCTCCAGCCCCATCTGTGGATGCAGCTCCTATACAGATCAAAACCACATCCACTCCGCTCCCCCAGTCTCCAAAAGCAAAGAAAACAGAAACCGTTGTAAAAAGCAAACCTTCTACTTCAAACAGCAAGCATGGATCTGTTTTCAATCTTGGTCAAGCGAACAATGGAATTTCTGAGAAAAAGATAGATTACGAAGTCAATGGAGAGGGTATGAGAGAAGCTATAAAGAATGGTGATATTGATGCTGTGAAAAAGCTTCTGAGTGAGGGTGTTAATTCTAATTACCACGACAGGCAAGGACTTTCTTTGCTACATTTAGCAGCAGTCTTCAACCAAACTGAGATAGTTTTTGCCCTCATGGACTCTGGAGCAAGCCTGGACTACAAAAATGCACAGGGTGAAACACCACTGGATTGTGCTCCTGTTACCTTGCAATACAAGATGCGAGAGAAAATGGAACAAGATAAAGGAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 FYVE

Protein Analysis

284

Amino Acids

30.54

Weight (kDa)

7.01

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FYVE PF01363 7 - 63 7.4e-16 FYVE zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AccBSI CCGCTC 1 cut(s) 433
AccII CGCG 1 cut(s) 31
AciI CCGC 3 cut(s) 29, 97, 431
AclWI GGATC 3 cut(s) 81, 284, 517
AcsI RAATTY 1 cut(s) 543
AcuI CTGAAG 3 cut(s) 213, 240, 312
AcyI GRCGYC 1 cut(s) 39
AdeI CACNNNGTG 1 cut(s) 773
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 3 cut(s) 96, 146, 391
AgeI ACCGGT 1 cut(s) 160
AgsI TTSAA 5 cut(s) 20, 58, 495, 520, 706
AjnI CCWGG 1 cut(s) 750
AluBI AGCT 8 cut(s) 26, 54, 224, 254, 377, 401, 596, 631
AluI AGCT 8 cut(s) 26, 54, 224, 254, 377, 401, 596, 631
Alw21I GWGCWC 1 cut(s) 796
Alw26I GTCTC 2 cut(s) 321, 447
AlwI GGATC 3 cut(s) 81, 284, 517
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 3 cut(s) 51, 398, 695
ApoI RAATTY 1 cut(s) 543
AsiGI ACCGGT 1 cut(s) 160
Asp700I GAANNNNTTC 1 cut(s) 241
AspLEI GCGC 1 cut(s) 33
AsuHPI GGTGA 4 cut(s) 150, 224, 620, 785
BbsI GAAGAC 1 cut(s) 694
Bbv12I GWGCWC 1 cut(s) 796
BbvI GCAGC 3 cut(s) 63, 410, 707
BccI CCATC 3 cut(s) 19, 227, 394
BceAI ACGGC 2 cut(s) 89, 205
BciT130I CCWGG 1 cut(s) 752
BcoDI GTCTC 2 cut(s) 321, 447
BisI GCNGC 3 cut(s) 52, 399, 696
BlsI GCNGC 3 cut(s) 53, 400, 697
Bme1390I CCNGG 1 cut(s) 752
BmiI GGNNCC 2 cut(s) 6, 193
BmrFI CCNGG 1 cut(s) 752
BmrI ACTGGG 1 cut(s) 433
BmsI GCATC 5 cut(s) 85, 274, 385, 607, 807
BmuI ACTGGG 1 cut(s) 433
BpiI GAAGAC 1 cut(s) 694
BpmI CTGGAG 2 cut(s) 363, 762
BsaBI GATNNNNATC 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 146, 391
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 2 cut(s) 439, 789
Bse3DI GCAATG 1 cut(s) 79
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 1 cut(s) 752
BseGI GGATG 2 cut(s) 400, 422
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 3 cut(s) 96, 146, 391
BseMI GCAATG 1 cut(s) 79
BseMII CTCAG 5 cut(s) 155, 332, 540, 626, 705
BseNI ACTGG 2 cut(s) 439, 789
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 3 cut(s) 63, 410, 707
BsgI GTGCAG 1 cut(s) 370
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 150
BshTI ACCGGT 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 796
BsiSI CCGG 2 cut(s) 67, 161
BslI CCNNNNNNNGG 3 cut(s) 96, 146, 391
BsmAI GTCTC 2 cut(s) 321, 447
BsmI GAATGC 1 cut(s) 360
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 796
Bsp1407I TGTACA 1 cut(s) 217
Bsp143I GATC 5 cut(s) 86, 200, 289, 411, 509
BspACI CCGC 3 cut(s) 29, 97, 431
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 5 cut(s) 154, 331, 541, 627, 706
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 6, 193
BspPI GGATC 3 cut(s) 81, 284, 517
BsrBI CCGCTC 1 cut(s) 433
BsrDI GCAATG 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 160
BsrGI TGTACA 1 cut(s) 217
BsrI ACTGG 2 cut(s) 439, 789
BssAI RCCGGY 1 cut(s) 160
BssMI GATC 5 cut(s) 86, 200, 289, 411, 509
BssNI GRCGYC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 752
Bst4CI ACNGT 1 cut(s) 469
BstACI GRCGYC 1 cut(s) 39
BstAUI TGTACA 1 cut(s) 217
BstC8I GCNNGC 3 cut(s) 324, 503, 748
BstDEI CTNAG 5 cut(s) 141, 318, 549, 635, 714
BstF5I GGATG 2 cut(s) 400, 422
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 5 cut(s) 89, 203, 292, 414, 512
BstMAI GTCTC 2 cut(s) 321, 447
BstMBI GATC 5 cut(s) 86, 200, 289, 411, 509
BstMWI GCNNNNNNNGC 2 cut(s) 51, 319
BstNI CCWGG 1 cut(s) 752
BstSCI CCNGG 1 cut(s) 750
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 3 cut(s) 63, 410, 707
BstV2I GAAGAC 1 cut(s) 694
BstX2I RGATCY 2 cut(s) 289, 509
BstYI RGATCY 2 cut(s) 289, 509
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 2 cut(s) 400, 422
BtsI GCAGTG 1 cut(s) 181
BtsIMutI CAGTG 2 cut(s) 181, 782
Cac8I GCNNGC 3 cut(s) 324, 503, 748
CfoI GCGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 160
Csp6I GTAC 1 cut(s) 218
CspAI ACCGGT 1 cut(s) 160
CviAII CATG 2 cut(s) 506, 733
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 5 cut(s) 141, 318, 549, 635, 714
DpnI GATC 5 cut(s) 88, 202, 291, 413, 511
DpnII GATC 5 cut(s) 86, 200, 289, 411, 509
DraIII CACNNNGTG 1 cut(s) 773
EciI GGCGGA 1 cut(s) 112
Eco57I CTGAAG 3 cut(s) 213, 240, 312
EcoRII CCWGG 1 cut(s) 750
FaeI CATG 2 cut(s) 509, 736
FaiI YATR 9 cut(s) 209, 248, 275, 311, 407, 507, 587, 599, 734
FalI AAGNNNNNCTT 2 cut(s) 469, 501
FatI CATG 2 cut(s) 505, 732
Fnu4HI GCNGC 3 cut(s) 52, 399, 696
FokI GGATG 2 cut(s) 407, 409
Fsp4HI GCNGC 3 cut(s) 52, 399, 696
GlaI GCGC 1 cut(s) 32
GluI GCNGC 3 cut(s) 52, 399, 696
GsuI CTGGAG 2 cut(s) 363, 762
HaeIII GGCC 1 cut(s) 150
HapII CCGG 2 cut(s) 67, 161
HhaI GCGC 1 cut(s) 33
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 2 cut(s) 509, 736
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HindIII AAGCTT 2 cut(s) 222, 629
HinfI GANTC 2 cut(s) 242, 737
HpaII CCGG 2 cut(s) 67, 161
HphI GGTGA 4 cut(s) 150, 224, 620, 785
Hpy188I TCNGA 3 cut(s) 232, 550, 636
Hpy188III TCNNGA 3 cut(s) 20, 198, 741
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 495
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 9 cut(s) 45, 51, 174, 287, 313, 351, 398, 767, 808
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 319
HpyF3I CTNAG 5 cut(s) 141, 318, 549, 635, 714
HpySE526I ACGT 1 cut(s) 39
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 2 cut(s) 509, 736
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 5 cut(s) 86, 200, 289, 411, 509
LmnI GCTCC 8 cut(s) 4, 31, 197, 382, 406, 438, 743, 799
Lsp1109I GCAGC 3 cut(s) 63, 410, 707
LweI GCATC 5 cut(s) 85, 274, 385, 607, 807
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 35, 799
MalI GATC 5 cut(s) 88, 202, 291, 413, 511
MbiI CCGCTC 1 cut(s) 433
MboI GATC 5 cut(s) 86, 200, 289, 411, 509
MboII GAAGA 2 cut(s) 219, 694
MflI RGATCY 2 cut(s) 289, 509
MhlI GDGCHC 1 cut(s) 796
MluCI AATT 3 cut(s) 543, 649, 655
MlyI GAGTC 1 cut(s) 731
MnlI CCTC 6 cut(s) 18, 150, 205, 574, 634, 740
MroXI GAANNNNTTC 1 cut(s) 241
MseI TTAA 2 cut(s) 186, 648
MspI CCGG 2 cut(s) 67, 161
MspR9I CCNGG 1 cut(s) 752
Mva1269I GAATGC 1 cut(s) 360
MvaI CCWGG 1 cut(s) 752
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 51, 319
NdeII GATC 5 cut(s) 86, 200, 289, 411, 509
NlaIII CATG 2 cut(s) 509, 736
NlaIV GGNNCC 2 cut(s) 6, 193
NmuCI GTSAC 1 cut(s) 35
PctI GAATGC 1 cut(s) 360
PdmI GAANNNNTTC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 242
PinAI ACCGGT 1 cut(s) 160
PkrI GCNGC 3 cut(s) 53, 400, 697
PleI GAGTC 1 cut(s) 731
PpsI GAGTC 1 cut(s) 731
Psp6I CCWGG 1 cut(s) 750
PspGI CCWGG 1 cut(s) 750
PspN4I GGNNCC 2 cut(s) 6, 193
PsuI RGATCY 2 cut(s) 289, 509
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SaqAI TTAA 2 cut(s) 186, 648
SatI GCNGC 3 cut(s) 52, 399, 696
Sau3AI GATC 5 cut(s) 86, 200, 289, 411, 509
SchI GAGTC 1 cut(s) 731
ScrFI CCNGG 1 cut(s) 752
SduI GDGCHC 1 cut(s) 796
SfaNI GCATC 5 cut(s) 85, 274, 385, 607, 807
Sse9I AATT 3 cut(s) 543, 649, 655
SsiI CCGC 3 cut(s) 29, 97, 431
StyD4I CCNGG 1 cut(s) 750
TaaI ACNGT 1 cut(s) 469
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 199
TasI AATT 3 cut(s) 543, 649, 655
TatI WGTACW 1 cut(s) 217
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 2 cut(s) 186, 648
Tru9I TTAA 2 cut(s) 186, 648
TscAI CASTG 2 cut(s) 181, 789
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 3 cut(s) 51, 398, 695
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 2 cut(s) 181, 789
XapI RAATTY 1 cut(s) 543
XmnI GAANNNNTTC 1 cut(s) 241
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.