Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007956

Physical Location & Seq

Genomic Coordinates Forward (+)

18157312 .. 18162014

Gene Structure 4703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G189300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGAGCCTCCTCCTTTCCAAGAAGCACCACGCTGCGACGTCTGCAAATGCAGCTTCAATGCTTTCAGGCGACGGCATCATTGCCGATCTTGTGGCCGGACGTTGTGCCATGAACATTCGTCAAACCAACTGGCTCTACCACAGTTCGGCATTTATTCAACCGTTAGAGTTTGCAGTGATTGTTTCAATGACTCCTCTCGATCTACCAAAGGTGATGTATCTTCGGACAGAGTTGATGCTGTAACAGCTACAGTTTCTAGATTGGACATTGGTGCAGATGTAGATTTAAAGGCTGAACCAACTGTAGAGTATCAACCTGTGTCAGCCATTTCAGAATGCAAGTGTGGAATGCCTTTATGTATTTGTGAAGCTCCAGCTCCATCCGTGGATGCGGTTCCCCAGCAGAGCAAAACCGTATCCACCTCTGTCCCTCGATCGAATCCAAGACCAAAAAAGACAGAAACCACTTTAAAAACCAATGCTTCCACTTCGAACAGCAAACATAGTTCTGTCTTCAATCTTGGTCAAGCGAACAGCGGAACTTCTGATAAAAGCCAGATGGATTATGAAGTCACTGGGGAGGGTATGAGAGAAGCTATAAAGAATAGTGATGTTGCTGCTGTCAAGAAGCTTCTGAGTGAGGGTGTTGATGGCAATTACCATGACAAGCAAGGACTTTCTGTGCTACATTTAGCAGCAGTCTTTAATCAAACTGAGATAGTTTTTGCCCTGATGGACTCTGGAGCAAGCCTGGACTACAAGAATGCACAGGGGGAAACACCATTGGACTGTGCTCCTGCCACTCTCCAATACAAGATGCGACAGAAGATGGAAGAAGATAGAAGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 FYVE

Protein Analysis

284

Amino Acids

30.81

Weight (kDa)

6.39

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210
fragaria_vesca	FvH4_1g09680 FvH4_1g09680
malus_domestica	MD02G1105800.v1.1 MD15G1225700.v1.1
prunus_persica	Prupe.7G189300_v2.0.a1
pyrus_communis	pycom02g08370 pycom15g20060
rosa_chinensis	RchiOBHm_Chr2g0096541
rosa_laevigata	RLG00000016647
rosa_multiflora	Rmu_sc0004096.1_g000009
rosa_roxburghii	Rroxscaffold_2G00145550
rosa_rugosa	Rorug02G0058400
rosa_samantha	Rh2AG105500 Rh2BG107800 Rh2CG109600 Rh2DG108600
rosa_wichuraiana	Rw2G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	42
AciI	CCGC	2 cut(s)	392, 537
AcoI	YGGCCR	1 cut(s)	94
AcyI	GRCGYC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	58, 159, 187, 517
AjnI	CCWGG	1 cut(s)	750
AluBI	AGCT	6 cut(s)	54, 248, 371, 377, 596, 631
AluI	AGCT	6 cut(s)	54, 248, 371, 377, 596, 631
Alw21I	GWGCWC	1 cut(s)	796
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	4 cut(s)	33, 51, 617, 695
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	491
BbsI	GAAGAC	1 cut(s)	505
Bbv12I	GWGCWC	1 cut(s)	796
BbvI	GCAGC	4 cut(s)	20, 63, 604, 707
BccI	CCATC	5 cut(s)	388, 553, 644, 727, 823
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	752
BciVI	GTATCC	1 cut(s)	427
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	2 cut(s)	249, 303
BfuI	GTATCC	1 cut(s)	427
BisI	GCNGC	4 cut(s)	34, 52, 618, 696
BlsI	GCNGC	4 cut(s)	35, 53, 619, 697
Bme1390I	CCNGG	1 cut(s)	752
BmiI	GGNNCC	2 cut(s)	6, 396
BmrFI	CCNGG	1 cut(s)	752
BmrI	ACTGGG	1 cut(s)	585
BmsI	GCATC	4 cut(s)	85, 226, 379, 807
BmuI	ACTGGG	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	505
BpmI	CTGGAG	2 cut(s)	357, 762
Bpu14I	TTCGAA	1 cut(s)	491
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	135, 580
Bse3DI	GCAATG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	752
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	2 cut(s)	380, 394
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	2 cut(s)	626, 705
BseNI	ACTGG	2 cut(s)	135, 580
BseRI	GAGGAG	1 cut(s)	184
BseXI	GCAGC	4 cut(s)	20, 63, 604, 707
BseYI	CCCAGC	1 cut(s)	399
BsgI	GTGCAG	1 cut(s)	294
Bsh1285I	CGRYCG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	796
BsiSI	CCGG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	413
BsmI	GAATGC	3 cut(s)	341, 354, 769
BsnI	GGCC	1 cut(s)	96
Bsp119I	TTCGAA	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	796
Bsp143I	GATC	3 cut(s)	86, 200, 434
BspACI	CCGC	2 cut(s)	392, 537
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	2 cut(s)	627, 706
BspLI	GGNNCC	2 cut(s)	6, 396
BspQI	GCTCTTC	1 cut(s)	838
BspT104I	TTCGAA	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	135, 580
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	3 cut(s)	86, 200, 434
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	1 cut(s)	752
Bst4CI	ACNGT	6 cut(s)	144, 163, 253, 304, 415, 791
Bst6I	CTCTTC	1 cut(s)	838
BstACI	GRCGYC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	748
BstDEI	CTNAG	2 cut(s)	635, 714
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	2 cut(s)	380, 394
BstKTI	GATC	3 cut(s)	89, 203, 437
BstMBI	GATC	3 cut(s)	86, 200, 434
BstMCI	CGRYCG	1 cut(s)	437
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 51, 245
BstNI	CCWGG	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	750
BstSFI	CTRYAG	2 cut(s)	249, 303
BstV1I	GCAGC	4 cut(s)	20, 63, 604, 707
BstV2I	GAAGAC	1 cut(s)	505
BsuI	GTATCC	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	380, 394
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	181, 573
Cac8I	GCNNGC	1 cut(s)	748
CviAII	CATG	3 cut(s)	110, 662, 849
DdeI	CTNAG	2 cut(s)	635, 714
DpnI	GATC	3 cut(s)	88, 202, 436
DpnII	GATC	3 cut(s)	86, 200, 434
DraI	TTTAAA	2 cut(s)	288, 471
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	838
EarI	CTCTTC	1 cut(s)	838
EcoRII	CCWGG	1 cut(s)	750
FaeI	CATG	3 cut(s)	113, 665, 852
FaiI	YATR	8 cut(s)	111, 358, 504, 567, 587, 599, 663, 850
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	3 cut(s)	109, 661, 848
Fnu4HI	GCNGC	4 cut(s)	34, 52, 618, 696
FokI	GGATG	2 cut(s)	367, 401
Fsp4HI	GCNGC	4 cut(s)	34, 52, 618, 696
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	4 cut(s)	34, 52, 618, 696
GsaI	CCCAGC	1 cut(s)	403
GsuI	CTGGAG	2 cut(s)	357, 762
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	113, 665, 852
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	3 cut(s)	191, 439, 737
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	1 cut(s)	224
Hpy188I	TCNGA	4 cut(s)	226, 334, 547, 636
Hpy188III	TCNNGA	4 cut(s)	198, 258, 625, 741
Hpy99I	CGWCG	2 cut(s)	41, 75
HpyCH4III	ACNGT	6 cut(s)	144, 163, 253, 304, 415, 791
HpyCH4IV	ACGT	2 cut(s)	39, 101
HpyCH4V	TGCA	6 cut(s)	45, 51, 174, 275, 339, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 51, 245
HpyF3I	CTNAG	2 cut(s)	635, 714
HpySE526I	ACGT	2 cut(s)	39, 101
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	113, 665, 852
Kzo9I	GATC	3 cut(s)	86, 200, 434
LguI	GCTCTTC	1 cut(s)	838
LmnI	GCTCC	5 cut(s)	4, 376, 382, 743, 799
Lsp1109I	GCAGC	4 cut(s)	20, 63, 604, 707
LweI	GCATC	4 cut(s)	85, 226, 379, 807
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	2 cut(s)	39, 101
MaeIII	GTNAC	2 cut(s)	241, 571
MalI	GATC	3 cut(s)	88, 202, 436
MboI	GATC	3 cut(s)	86, 200, 434
MboII	GAAGA	5 cut(s)	213, 505, 838, 845, 848
MhlI	GDGCHC	1 cut(s)	796
MluCI	AATT	1 cut(s)	655
MlyI	GAGTC	2 cut(s)	185, 731
MnlI	CCTC	7 cut(s)	18, 21, 205, 433, 441, 574, 634
MseI	TTAA	3 cut(s)	287, 470, 705
MspA1I	CMGCKG	1 cut(s)	537
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	1 cut(s)	752
Mva1269I	GAATGC	3 cut(s)	341, 354, 769
MvaI	CCWGG	1 cut(s)	752
MwoI	GCNNNNNNNGC	3 cut(s)	42, 51, 245
NdeII	GATC	3 cut(s)	86, 200, 434
NlaIII	CATG	3 cut(s)	113, 665, 852
NlaIV	GGNNCC	2 cut(s)	6, 396
NmuCI	GTSAC	1 cut(s)	571
NspV	TTCGAA	1 cut(s)	491
PciSI	GCTCTTC	1 cut(s)	838
PctI	GAATGC	3 cut(s)	341, 354, 769
PfeI	GAWTC	1 cut(s)	439
PkrI	GCNGC	4 cut(s)	35, 53, 619, 697
Ple19I	CGATCG	1 cut(s)	437
PleI	GAGTC	2 cut(s)	185, 731
PpsI	GAGTC	2 cut(s)	185, 731
Psp6I	CCWGG	1 cut(s)	750
PspFI	CCCAGC	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	750
PspN4I	GGNNCC	2 cut(s)	6, 396
PvuI	CGATCG	1 cut(s)	437
SapI	GCTCTTC	1 cut(s)	838
SaqAI	TTAA	3 cut(s)	287, 470, 705
SatI	GCNGC	4 cut(s)	34, 52, 618, 696
Sau3AI	GATC	3 cut(s)	86, 200, 434
SchI	GAGTC	2 cut(s)	185, 731
ScrFI	CCNGG	1 cut(s)	752
SduI	GDGCHC	1 cut(s)	796
SfaNI	GCATC	4 cut(s)	85, 226, 379, 807
SfcI	CTRYAG	2 cut(s)	249, 303
SfuI	TTCGAA	1 cut(s)	491
Sse9I	AATT	1 cut(s)	655
SsiI	CCGC	2 cut(s)	392, 537
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	750
TaaI	ACNGT	6 cut(s)	144, 163, 253, 304, 415, 791
TaiI	ACGT	2 cut(s)	42, 104
TaqI	TCGA	4 cut(s)	199, 433, 437, 491
TasI	AATT	1 cut(s)	655
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	3 cut(s)	287, 470, 705
Tru9I	TTAA	3 cut(s)	287, 470, 705
TscAI	CASTG	2 cut(s)	181, 580
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	4 cut(s)	33, 51, 617, 695
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	2 cut(s)	126, 582
TspGWI	ACGGA	1 cut(s)	373
TspRI	CASTG	2 cut(s)	181, 580
XbaI	TCTAGA	1 cut(s)	257
XspI	CTAG	1 cut(s)	258
ZraI	GACGTC	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.