Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007956

Physical Location & Seq

Genomic Coordinates Forward (+)

11157118 .. 11159417

Gene Structure 2300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G26210.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCTGTTTTCCAATAAAGTTAATTCTCTAACAGAACAAGTTTCGAGATTGGATATTGACGACAACGATATGGGACTTGGAGGTAGTGAAACAATGGAATGCAAGTGTGGTATGCCTCTGTGTATCTGTGTAGCTCCTCCCAAATCAACTGATAAACCAAACCCACCTGCTACCATTGCTCCTGTGGTTCTTCCTCAGTTGAAGTCAGAGGCTTCAGCAAAAAGTAAAGGTTCCACTTCCAGCAGCAATGCTAGATCAGCTCTAAATGCTGGACTAGACACCCCCCAAAGAGACTATGAAGCCAGTGGGGAGGGATTAAGAGAAGCGATTAAGAATGGTGACAGTGCTGGTGCGAAAAAGCTTCTAAAAGAGGGCGTAGATGCAAATTACCGAGACAGGCAAGGAATGTCGGTGCTTCATCTGGCTGTCCTGTTCAACCAAACTGATATTGCGTTGATGTTGATGGATCATGGAGCAAGCCTTGAGTACAAGAATGCACAAGGAGAAACACCGCTAGATTGTGCCCCGGCAACACTGCAATACAAGATGCGGGAAAAGATGAAGTCCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ank_5 FYVE

Protein Analysis

190

Amino Acids

20.32

Weight (kDa)

5.75

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	108 - 175	1.1e-09	Ankyrin repeats (3 copies)
Ank_5	PF13857	121 - 175	1.2e-09	Ankyrin repeats (many copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210 AT2G26210
fragaria_vesca	FvH4_1g09680 FvH4_1g09680
malus_domestica	MD02G1105800.v1.1 MD15G1225700.v1.1
prunus_persica	Prupe.7G189300_v2.0.a1
pyrus_communis	pycom02g08370 pycom15g20060
rosa_chinensis	RchiOBHm_Chr2g0096541
rosa_laevigata	RLG00000016647
rosa_multiflora	Rmu_sc0004096.1_g000009
rosa_roxburghii	Rroxscaffold_2G00145550
rosa_rugosa	Rorug02G0058400
rosa_samantha	Rh2AG105500 Rh2BG107800 Rh2CG109600 Rh2DG108600
rosa_wichuraiana	Rw2G008160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	175
AciI	CCGC	2 cut(s)	512, 550
AclWI	GGATC	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	488
AgsI	TTSAA	2 cut(s)	202, 436
AluBI	AGCT	3 cut(s)	134, 260, 361
AluI	AGCT	3 cut(s)	134, 260, 361
Alw26I	GTCTC	2 cut(s)	285, 387
AlwI	GGATC	1 cut(s)	474
ApeKI	GCWGC	1 cut(s)	243
AsuC2I	CCSGG	1 cut(s)	527
AsuHPI	GGTGA	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	526
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	527
BcoDI	GTCTC	2 cut(s)	285, 387
BfaI	CTAG	3 cut(s)	252, 275, 515
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
Bme1390I	CCNGG	1 cut(s)	527
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	1 cut(s)	527
BmsI	GCATC	2 cut(s)	370, 537
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	525
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bse1I	ACTGG	1 cut(s)	303
Bse3DI	GCAATG	2 cut(s)	174, 253
BseDI	CCNNGG	1 cut(s)	525
BseMI	GCAATG	2 cut(s)	174, 253
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	126
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	87
BsmAI	GTCTC	2 cut(s)	285, 387
BsmFI	GGGAC	1 cut(s)	87
BsmI	GAATGC	2 cut(s)	104, 499
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp143I	GATC	2 cut(s)	254, 466
BspACI	CCGC	2 cut(s)	512, 550
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	232
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	474
BsrDI	GCAATG	2 cut(s)	174, 253
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	2 cut(s)	254, 466
Bst4CI	ACNGT	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	1 cut(s)	195
BstKTI	GATC	2 cut(s)	257, 469
BstMAI	GTCTC	2 cut(s)	285, 387
BstMBI	GATC	2 cut(s)	254, 466
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 257, 266
BstSCI	CCNGG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	526
BstV1I	GCAGC	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	533
BtsIMutI	CAGTG	3 cut(s)	310, 349, 533
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	478
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	1 cut(s)	470
CviJI	RGCY	7 cut(s)	134, 212, 260, 302, 361, 425, 480
CviKI_1	RGCY	7 cut(s)	134, 212, 260, 302, 361, 425, 480
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	256, 468
DpnII	GATC	2 cut(s)	254, 466
Eco57I	CTGAAG	1 cut(s)	198
FaeI	CATG	1 cut(s)	473
FaiI	YATR	4 cut(s)	71, 113, 297, 471
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	1 cut(s)	469
FauI	CCCGC	1 cut(s)	543
Fnu4HI	GCNGC	1 cut(s)	244
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	3 cut(s)	252, 275, 515
GluI	GCNGC	1 cut(s)	244
HapII	CCGG	1 cut(s)	527
Hin1II	CATG	1 cut(s)	473
HindIII	AAGCTT	1 cut(s)	359
HpaII	CCGG	1 cut(s)	527
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	567
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	1 cut(s)	45
Hpy8I	GTNNAC	1 cut(s)	567
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4V	TGCA	4 cut(s)	102, 383, 497, 538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 257, 266
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	473
Kzo9I	GATC	2 cut(s)	254, 466
LmnI	GCTCC	3 cut(s)	139, 184, 473
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	2 cut(s)	370, 537
MaeI	CTAG	3 cut(s)	252, 275, 515
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	2 cut(s)	256, 468
MboI	GATC	2 cut(s)	254, 466
MboII	GAAGA	1 cut(s)	182
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	2 cut(s)	22, 385
MnlI	CCTC	7 cut(s)	74, 126, 147, 202, 204, 304, 364
MseI	TTAA	4 cut(s)	21, 317, 330, 571
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	527
Mva1269I	GAATGC	2 cut(s)	104, 499
MwoI	GCNNNNNNNGC	3 cut(s)	176, 257, 266
NciI	CCSGG	1 cut(s)	527
NdeII	GATC	2 cut(s)	254, 466
NlaIII	CATG	1 cut(s)	473
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	338
PaqCI	CACCTGC	1 cut(s)	175
PctI	GAATGC	2 cut(s)	104, 499
PkrI	GCNGC	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	232
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
SaqAI	TTAA	4 cut(s)	21, 317, 330, 571
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	2 cut(s)	254, 466
ScrFI	CCNGG	1 cut(s)	527
SduI	GDGCHC	1 cut(s)	526
SetI	ASST	6 cut(s)	85, 136, 169, 232, 262, 363
SfaNI	GCATC	2 cut(s)	370, 537
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	2 cut(s)	22, 385
SsiI	CCGC	2 cut(s)	512, 550
SspMI	CTAG	3 cut(s)	252, 275, 515
StyD4I	CCNGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	344
TaqI	TCGA	1 cut(s)	44
TasI	AATT	2 cut(s)	22, 385
TatI	WGTACW	1 cut(s)	486
Tru1I	TTAA	4 cut(s)	21, 317, 330, 571
Tru9I	TTAA	4 cut(s)	21, 317, 330, 571
TscAI	CASTG	3 cut(s)	310, 349, 540
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	1 cut(s)	243
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	312, 407
TspRI	CASTG	3 cut(s)	310, 349, 540
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XspI	CTAG	3 cut(s)	252, 275, 515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.