RLG00000025794

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0019067
Physical Location & Seq
Forward (+)
48323785 .. 48324459
675 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025794

Sequence Viewer

Length: 675 bp
ATGTCTACTACTCAAGACTGCATATCAATCTCCTGGCCCCCAACCCCGACCAGAAATACAACCCCGACTCCCAATAACAAACCCCTGCCCTCTAAGTCCACCAACGACCTCATAATATATACCGTATTATGCATCCTTCTTGGAGCCTCTATCGTTCTTCTAGCCATGTCTCCCTGGACAGACCCCAAGTTCAAGGTCCAGTCGGCCACGCTGTCTCGACTCAACGCCACTGGCTCCGAGTTAACCGCTACATGGGATATCACTCTTCTCGCCTCCAACCCAGAATACAAGTACGGACTCTCCTTCACCGAGCTCCAGGCCTGGGTCCTCTACCGAGACCACAACCTTCTCATGCTCGGCGAAACGCCGTTGCGTCCCTTTGCTGTGAATAAGAGGAACCAGACACTTGTTAATGTGAAACTCGCGACGGTGAGCCAGTCGGTCGGCGATGACGTGGGAAAGGAAATGTACGAAGACAGAAGTCGGGGATTTATGGTTTTCTCAGTTAGGGTTAGCGGTTATCATCGGCAGAAGTTCTTTTTGACGAGATACGGGTGTTTTCTGGTGAACTGTGATTGGGTTTATTTCGGATTTTCCCTTAATGGGACGGGCACCTTGATCGAACAAAAGGATTGCGAATTCCTGCATAACGGGGGGTACCACTCAAATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

225

Amino Acids

25.2

Weight (kDa)

8.19

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019067)

Species Orthologous Gene IDs
rosa_laevigata RLG00000016649 RLG00000025794
rosa_multiflora Rmu_sc0004096.1_g000005
rosa_rugosa Rorug02G0058400
rosa_samantha Rh2AG105700 Rh2BG108200 Rh2CG110000 Rh2DG108800
rosa_wichuraiana Rw2G008180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 657
AccB1I GGYRCC 2 cut(s) 611, 657
AccI GTMKAC 1 cut(s) 5
AccII CGCG 1 cut(s) 425
AciI CCGC 2 cut(s) 246, 516
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 1 cut(s) 638
AfaI GTAC 3 cut(s) 293, 470, 659
AfiI CCNNNNNNNGG 3 cut(s) 252, 322, 603
AgsI TTSAA 1 cut(s) 193
AjiI CACGTC 1 cut(s) 454
AjnI CCWGG 4 cut(s) 32, 173, 315, 320
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 3 cut(s) 174, 219, 330
AoxI GGCC 3 cut(s) 35, 204, 318
ApoI RAATTY 1 cut(s) 638
Asp718I GGTACC 1 cut(s) 657
AspS9I GGNCC 3 cut(s) 36, 196, 325
AsuHPI GGTGA 3 cut(s) 298, 442, 577
AvaII GGWCC 2 cut(s) 196, 325
BaeGI GKGCMC 1 cut(s) 614
BaeI ACNNNNGTAYC 2 cut(s) 541, 574
BanI GGYRCC 2 cut(s) 611, 657
BanII GRGCYC 1 cut(s) 315
BbsI GAAGAC 1 cut(s) 480
Bbv12I GWGCWC 1 cut(s) 315
BceAI ACGGC 1 cut(s) 352
BcgI CGANNNNNNTGC 2 cut(s) 601, 635
BciT130I CCWGG 4 cut(s) 34, 175, 317, 322
BcoDI GTCTC 3 cut(s) 174, 219, 330
BfaI CTAG 1 cut(s) 161
Bme1390I CCNGG 4 cut(s) 34, 175, 317, 322
Bme18I GGWCC 2 cut(s) 196, 325
BmgBI CACGTC 1 cut(s) 454
BmgT120I GGNCC 3 cut(s) 36, 196, 325
BmiI GGNNCC 7 cut(s) 38, 145, 235, 326, 398, 613, 659
BmrFI CCNGG 4 cut(s) 34, 175, 317, 322
BmsI GCATC 1 cut(s) 141
BoxI GACNNNNGTC 1 cut(s) 480
BpiI GAAGAC 1 cut(s) 480
BpmI CTGGAG 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 330
BsaJI CCNNGG 2 cut(s) 173, 321
BsaXI ACNNNNNCTCC 4 cut(s) 52, 82, 284, 314
Bsc4I CCNNNNNNNGG 3 cut(s) 252, 322, 603
Bse1I ACTGG 3 cut(s) 199, 235, 436
BseBI CCWGG 4 cut(s) 34, 175, 317, 322
BseDI CCNNGG 2 cut(s) 173, 321
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 3 cut(s) 252, 322, 603
BseMII CTCAG 1 cut(s) 516
BseNI ACTGG 3 cut(s) 199, 235, 436
BseSI GKGCMC 1 cut(s) 614
Bsh1236I CGCG 1 cut(s) 425
Bsh1285I CGRYCG 1 cut(s) 444
BshFI GGCC 3 cut(s) 37, 206, 320
BshNI GGYRCC 2 cut(s) 611, 657
BsiEI CGRYCG 1 cut(s) 444
BsiHKAI GWGCWC 1 cut(s) 315
BslFI GGGAC 2 cut(s) 360, 619
BslI CCNNNNNNNGG 3 cut(s) 252, 322, 603
BsmAI GTCTC 3 cut(s) 174, 219, 330
BsmFI GGGAC 2 cut(s) 360, 619
BsnI GGCC 3 cut(s) 37, 206, 320
Bso31I GGTCTC 1 cut(s) 330
Bsp1286I GDGCHC 2 cut(s) 315, 614
Bsp143I GATC 1 cut(s) 618
Bsp68I TCGCGA 1 cut(s) 425
BspACI CCGC 2 cut(s) 246, 516
BspANI GGCC 3 cut(s) 37, 206, 320
BspCNI CTCAG 1 cut(s) 515
BspFNI CGCG 1 cut(s) 425
BspLI GGNNCC 7 cut(s) 38, 145, 235, 326, 398, 613, 659
BspT107I GGYRCC 2 cut(s) 611, 657
BspTNI GGTCTC 1 cut(s) 330
BsrI ACTGG 3 cut(s) 199, 235, 436
BssECI CCNNGG 2 cut(s) 173, 321
BssMI GATC 1 cut(s) 618
Bst2UI CCWGG 4 cut(s) 34, 175, 317, 322
Bst4CI ACNGT 3 cut(s) 124, 430, 572
Bst6I CTCTTC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 93, 502
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 425
BstKTI GATC 1 cut(s) 621
BstMAI GTCTC 3 cut(s) 174, 219, 330
BstMBI GATC 1 cut(s) 618
BstMCI CGRYCG 1 cut(s) 444
BstNI CCWGG 4 cut(s) 34, 175, 317, 322
BstPAI GACNNNNGTC 1 cut(s) 480
BstSCI CCNGG 4 cut(s) 32, 173, 315, 320
BstSLI GKGCMC 1 cut(s) 614
BstUI CGCG 1 cut(s) 425
BstV2I GAAGAC 1 cut(s) 480
BsuRI GGCC 3 cut(s) 37, 206, 320
BtgZI GCGATG 1 cut(s) 462
BtrI CACGTC 1 cut(s) 454
BtsCI GGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 228
BtuMI TCGCGA 1 cut(s) 425
Cfr13I GGNCC 3 cut(s) 36, 196, 325
CseI GACGC 1 cut(s) 362
Csp6I GTAC 3 cut(s) 292, 469, 658
CspCI CAANNNNNGTGG 1 cut(s) 650
CviAII CATG 3 cut(s) 166, 252, 352
CviJI RGCY 8 cut(s) 37, 146, 164, 206, 234, 313, 320, 435
CviKI_1 RGCY 8 cut(s) 37, 146, 164, 206, 234, 313, 320, 435
CviQI GTAC 3 cut(s) 292, 469, 658
DdeI CTNAG 2 cut(s) 93, 502
DpnI GATC 1 cut(s) 620
DpnII GATC 1 cut(s) 618
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Ecl136II GAGCTC 1 cut(s) 313
Eco147I AGGCCT 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 330
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 196, 325
Eco53kI GAGCTC 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 313
EcoO109I RGGNCCY 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 638
EcoRII CCWGG 4 cut(s) 32, 173, 315, 320
EcoRV GATATC 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 315
FaeI CATG 3 cut(s) 169, 255, 355
FaqI GGGAC 2 cut(s) 360, 619
FatI CATG 3 cut(s) 165, 251, 351
FblI GTMKAC 1 cut(s) 5
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 315
FspBI CTAG 1 cut(s) 161
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 3 cut(s) 37, 206, 320
HgaI GACGC 1 cut(s) 362
Hin1II CATG 3 cut(s) 169, 255, 355
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 3 cut(s) 67, 219, 297
HpaI GTTAAC 1 cut(s) 243
HphI GGTGA 3 cut(s) 298, 442, 577
Hpy166II GTNNAC 4 cut(s) 6, 99, 243, 568
Hpy188I TCNGA 2 cut(s) 238, 590
Hpy188III TCNNGA 3 cut(s) 14, 216, 424
Hpy8I GTNNAC 4 cut(s) 6, 99, 243, 568
Hpy99I CGWCG 1 cut(s) 430
HpyAV CCTTC 3 cut(s) 146, 313, 356
HpyCH4III ACNGT 3 cut(s) 124, 430, 572
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 3 cut(s) 21, 132, 646
HpyF3I CTNAG 2 cut(s) 93, 502
HpySE526I ACGT 1 cut(s) 453
Hsp92II CATG 3 cut(s) 169, 255, 355
KpnI GGTACC 1 cut(s) 661
KspAI GTTAAC 1 cut(s) 243
Kzo9I GATC 1 cut(s) 618
LmnI GCTCC 3 cut(s) 143, 239, 318
LweI GCATC 1 cut(s) 141
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 453
MalI GATC 1 cut(s) 620
MboI GATC 1 cut(s) 618
MboII GAAGA 3 cut(s) 149, 257, 485
MhlI GDGCHC 2 cut(s) 315, 614
MluCI AATT 2 cut(s) 638, 667
MlyI GAGTC 3 cut(s) 61, 213, 291
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 6 cut(s) 100, 119, 157, 283, 338, 387
Mph1103I ATGCAT 1 cut(s) 134
MseI TTAA 3 cut(s) 242, 411, 600
MspR9I CCNGG 4 cut(s) 34, 175, 317, 322
MvaI CCWGG 4 cut(s) 34, 175, 317, 322
MvnI CGCG 1 cut(s) 425
NdeII GATC 1 cut(s) 618
NlaIII CATG 3 cut(s) 169, 255, 355
NlaIV GGNNCC 7 cut(s) 38, 145, 235, 326, 398, 613, 659
NmeAIII GCCGAG 1 cut(s) 336
NruI TCGCGA 1 cut(s) 425
NsiI ATGCAT 1 cut(s) 134
PceI AGGCCT 1 cut(s) 320
PcsI WCGNNNNNNNCGW 1 cut(s) 450
PleI GAGTC 3 cut(s) 61, 213, 291
PpsI GAGTC 3 cut(s) 61, 213, 291
PpuMI RGGWCCY 1 cut(s) 325
PshAI GACNNNNGTC 1 cut(s) 480
Psp124BI GAGCTC 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 325
Psp6I CCWGG 4 cut(s) 32, 173, 315, 320
PspGI CCWGG 4 cut(s) 32, 173, 315, 320
PspN4I GGNNCC 7 cut(s) 38, 145, 235, 326, 398, 613, 659
PspPI GGNCC 3 cut(s) 36, 196, 325
PspPPI RGGWCCY 1 cut(s) 325
RruI TCGCGA 1 cut(s) 425
RsaI GTAC 3 cut(s) 293, 470, 659
RsaNI GTAC 3 cut(s) 292, 469, 658
SacI GAGCTC 1 cut(s) 315
SaqAI TTAA 3 cut(s) 242, 411, 600
Sau3AI GATC 1 cut(s) 618
Sau96I GGNCC 3 cut(s) 36, 196, 325
SchI GAGTC 3 cut(s) 61, 213, 291
ScrFI CCNGG 4 cut(s) 34, 175, 317, 322
SduI GDGCHC 2 cut(s) 315, 614
SetI ASST 6 cut(s) 111, 198, 315, 348, 456, 617
SfaNI GCATC 1 cut(s) 141
SinI GGWCC 2 cut(s) 196, 325
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 2 cut(s) 638, 667
SseBI AGGCCT 1 cut(s) 320
SsiI CCGC 2 cut(s) 246, 516
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 1 cut(s) 315
StuI AGGCCT 1 cut(s) 320
StyD4I CCNGG 4 cut(s) 32, 173, 315, 320
TaaI ACNGT 3 cut(s) 124, 430, 572
TaiI ACGT 1 cut(s) 456
TaqI TCGA 2 cut(s) 217, 621
TaqII GACCGA 1 cut(s) 430
TasI AATT 2 cut(s) 638, 667
Tru1I TTAA 3 cut(s) 242, 411, 600
Tru9I TTAA 3 cut(s) 242, 411, 600
TscAI CASTG 1 cut(s) 235
TspGWI ACGGA 1 cut(s) 309
TspRI CASTG 1 cut(s) 235
VpaK11BI GGWCC 2 cut(s) 196, 325
XapI RAATTY 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.