Rw2G008180

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0019067
Physical Location & Seq
Forward (+)
8108168 .. 8108920
753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008180.1

Sequence Viewer

Length: 753 bp
ATGTCTACGGCTCAAGACTCCACAGTAGTGATTGGATATCCAACTGGGGCGTATCAAGTCGACACCGGCTACCCTTATCCTCCATCCCCTGCCCTCTCATCCCCTGCCAGCTCATCCCCTGCCCGCTCAAACTACGATCAACCCACGAGGTCGGAATCGGACCGGTACCTCCAGCGCACTAAGTGCGTCAACCGCGCAGTAGCTATATTACAAGGCGTCACTCTTGGAGCTGTCATCATATTGATGGCTCTTCTGGCCTTGGGACGGAAAGACCCCGAGTTCAAGCTCGAGTCGGCGACGGTGTCTCGACTCAACGCCACTGGCCCCGAGTTAACGGCCACGTGGAACATCACTCTCCTCATCACCAACCCCGACCACAGATACAGAGTCTCCTTCAAAACCCTCCAGGCCAGGCTCTTCTACCGGGACCATAGCCGTCCCATGCTGCAGGCTGCGACGCCGTTGCCTCCCTTAGTTGTGAACAAGAGGAACCAGACACGTGTCGATGTGAAGCTCGCGGCGGTGAGCCAGTGGGTAGGCCGTGACGTGGGAAAGGAAATCTACGACGACAGGAGTCGGGGGCTTTTGAGTTTTCGACTTAGGGTGAGGGCTTGCTCTGGACATGATGTCCACAACTTTTTTACAGGCTGTTTTCGGTTCGACTGTGATCGGGTTTATATCGGGTTTTACCATAATGAGACGGGCACGTTGATCGAACCAAGAAAATGCGATTTATTGATTGGCCCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

250

Amino Acids

27.94

Weight (kDa)

9.53

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019067)

Species Orthologous Gene IDs
rosa_laevigata RLG00000016649 RLG00000025794
rosa_multiflora Rmu_sc0004096.1_g000005
rosa_rugosa Rorug02G0058400
rosa_samantha Rh2AG105700 Rh2BG108200 Rh2CG110000 Rh2DG108800
rosa_wichuraiana Rw2G008180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 165
AccBSI CCGCTC 1 cut(s) 126
AccI GTMKAC 2 cut(s) 5, 60
AccII CGCG 2 cut(s) 195, 518
AciI CCGC 4 cut(s) 124, 193, 518, 521
AcoI YGGCCR 1 cut(s) 336
AcvI CACGTG 2 cut(s) 342, 500
AcyI GRCGYC 2 cut(s) 216, 458
AdeI CACNNNGTG 1 cut(s) 183
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 2 cut(s) 264, 547
AflIII ACRYGT 2 cut(s) 497, 499
AgeI ACCGGT 1 cut(s) 162
AgsI TTSAA 2 cut(s) 283, 397
AhdI GACNNNNNGTC 1 cut(s) 626
AjiI CACGTC 1 cut(s) 547
AjnI CCWGG 2 cut(s) 405, 410
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 5 cut(s) 111, 203, 230, 286, 514
AluI AGCT 5 cut(s) 111, 203, 230, 286, 514
Alw26I GTCTC 3 cut(s) 309, 394, 692
Ama87I CYCGRG 3 cut(s) 275, 287, 326
AoxI GGCC 6 cut(s) 255, 322, 336, 408, 538, 742
ApeKI GCWGC 2 cut(s) 445, 452
AsiGI ACCGGT 1 cut(s) 162
Asp718I GGTACC 1 cut(s) 165
AspLEI GCGC 2 cut(s) 177, 197
AspS9I GGNCC 4 cut(s) 160, 323, 427, 743
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 3 cut(s) 355, 535, 616
AvaI CYCGRG 3 cut(s) 275, 287, 326
AvaII GGWCC 2 cut(s) 160, 427
BaeGI GKGCMC 1 cut(s) 707
BanI GGYRCC 1 cut(s) 165
BauI CACGAG 1 cut(s) 145
BbrPI CACGTG 2 cut(s) 342, 500
BbvI GCAGC 2 cut(s) 432, 439
BccI CCATC 2 cut(s) 91, 238
BceAI ACGGC 5 cut(s) 24, 351, 420, 445, 525
BcgI CGANNNNNNTGC 4 cut(s) 445, 479, 694, 728
BciT130I CCWGG 2 cut(s) 407, 412
BcnI CCSGG 1 cut(s) 425
BcoDI GTCTC 3 cut(s) 309, 394, 692
BfmI CTRYAG 1 cut(s) 446
BisI GCNGC 3 cut(s) 446, 453, 519
BlsI GCNGC 3 cut(s) 447, 454, 520
Bme1390I CCNGG 3 cut(s) 407, 412, 425
Bme18I GGWCC 2 cut(s) 160, 427
BmeRI GACNNNNNGTC 1 cut(s) 626
BmeT110I CYCGRG 3 cut(s) 275, 287, 326
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 4 cut(s) 160, 323, 427, 743
BmiI GGNNCC 4 cut(s) 167, 325, 428, 491
BmrFI CCNGG 3 cut(s) 407, 412, 425
BmrI ACTGGG 1 cut(s) 54
BmuI ACTGGG 1 cut(s) 54
BoxI GACNNNNGTC 2 cut(s) 500, 573
BpmI CTGGAG 2 cut(s) 155, 389
BpuMI CCSGG 1 cut(s) 425
BsaAI YACGTR 2 cut(s) 342, 500
BsaHI GRCGYC 2 cut(s) 216, 458
BsaJI CCNNGG 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 547
Bse118I RCCGGY 2 cut(s) 65, 162
Bse1I ACTGG 3 cut(s) 49, 325, 529
BseBI CCWGG 2 cut(s) 407, 412
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 3 cut(s) 83, 98, 113
BseLI CCNNNNNNNGG 2 cut(s) 264, 547
BseNI ACTGG 3 cut(s) 49, 325, 529
BseRI GAGGAG 1 cut(s) 347
BseSI GKGCMC 1 cut(s) 707
BseXI GCAGC 2 cut(s) 432, 439
Bsh1236I CGCG 2 cut(s) 195, 518
BshFI GGCC 6 cut(s) 257, 324, 338, 410, 540, 744
BshNI GGYRCC 1 cut(s) 165
BshTI ACCGGT 1 cut(s) 162
BsiHKCI CYCGRG 3 cut(s) 275, 287, 326
BsiSI CCGG 3 cut(s) 66, 163, 424
BslFI GGGAC 3 cut(s) 276, 423, 440
BslI CCNNNNNNNGG 2 cut(s) 264, 547
BsmAI GTCTC 3 cut(s) 309, 394, 692
BsmBI CGTCTC 1 cut(s) 692
BsmFI GGGAC 3 cut(s) 276, 423, 440
BsnI GGCC 6 cut(s) 257, 324, 338, 410, 540, 744
BsoBI CYCGRG 3 cut(s) 275, 287, 326
Bsp1286I GDGCHC 1 cut(s) 707
Bsp143I GATC 3 cut(s) 136, 667, 711
BspACI CCGC 4 cut(s) 124, 193, 518, 521
BspANI GGCC 6 cut(s) 257, 324, 338, 410, 540, 744
BspFNI CGCG 2 cut(s) 195, 518
BspLI GGNNCC 4 cut(s) 167, 325, 428, 491
BspMAI CTGCAG 1 cut(s) 450
BspQI GCTCTTC 2 cut(s) 255, 422
BspT107I GGYRCC 1 cut(s) 165
BsrBI CCGCTC 1 cut(s) 126
BsrFI RCCGGY 2 cut(s) 65, 162
BsrI ACTGG 3 cut(s) 49, 325, 529
BssAI RCCGGY 2 cut(s) 65, 162
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 3 cut(s) 136, 667, 711
BssNI GRCGYC 2 cut(s) 216, 458
BssSI CACGAG 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 145
Bst2UI CCWGG 2 cut(s) 407, 412
Bst4CI ACNGT 3 cut(s) 25, 301, 665
Bst6I CTCTTC 2 cut(s) 255, 422
BstACI GRCGYC 2 cut(s) 216, 458
BstAPI GCANNNNNTGC 1 cut(s) 183
BstBAI YACGTR 2 cut(s) 342, 500
BstC8I GCNNGC 5 cut(s) 109, 124, 450, 516, 613
BstDEI CTNAG 3 cut(s) 180, 472, 599
BstF5I GGATG 3 cut(s) 83, 98, 113
BstFNI CGCG 2 cut(s) 195, 518
BstHHI GCGC 2 cut(s) 177, 197
BstKTI GATC 3 cut(s) 139, 670, 714
BstMAI GTCTC 3 cut(s) 309, 394, 692
BstMBI GATC 3 cut(s) 136, 667, 711
BstMWI GCNNNNNNNGC 3 cut(s) 183, 192, 254
BstNI CCWGG 2 cut(s) 407, 412
BstPAI GACNNNNGTC 2 cut(s) 500, 573
BstSCI CCNGG 3 cut(s) 405, 410, 423
BstSFI CTRYAG 1 cut(s) 446
BstSLI GKGCMC 1 cut(s) 707
BstUI CGCG 2 cut(s) 195, 518
BstV1I GCAGC 2 cut(s) 432, 439
BsuRI GGCC 6 cut(s) 257, 324, 338, 410, 540, 744
BtrI CACGTC 1 cut(s) 547
BtsCI GGATG 3 cut(s) 83, 98, 113
BtsIMutI CAGTG 2 cut(s) 318, 536
Cac8I GCNNGC 5 cut(s) 109, 124, 450, 516, 613
CfoI GCGC 2 cut(s) 177, 197
Cfr10I RCCGGY 2 cut(s) 65, 162
Cfr13I GGNCC 4 cut(s) 160, 323, 427, 743
CpoI CGGWCCG 1 cut(s) 160
CseI GACGC 3 cut(s) 175, 205, 466
Csp6I GTAC 1 cut(s) 166
CspAI ACCGGT 1 cut(s) 162
CspI CGGWCCG 1 cut(s) 160
CviAII CATG 2 cut(s) 442, 623
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 3 cut(s) 180, 472, 599
DpnI GATC 3 cut(s) 138, 669, 713
DpnII GATC 3 cut(s) 136, 667, 711
DraIII CACNNNGTG 1 cut(s) 183
DriI GACNNNNNGTC 1 cut(s) 626
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 2 cut(s) 255, 422
Eam1105I GACNNNNNGTC 1 cut(s) 626
EarI CTCTTC 2 cut(s) 255, 422
Eco130I CCWWGG 1 cut(s) 258
Eco32I GATATC 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 160, 427
Eco72I CACGTG 2 cut(s) 342, 500
Eco88I CYCGRG 3 cut(s) 275, 287, 326
EcoRII CCWGG 2 cut(s) 405, 410
EcoRV GATATC 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 692
FaeI CATG 2 cut(s) 445, 626
FaiI YATR 7 cut(s) 206, 239, 432, 443, 624, 678, 693
FaqI GGGAC 3 cut(s) 276, 423, 440
FatI CATG 2 cut(s) 441, 622
FauI CCCGC 1 cut(s) 131
FblI GTMKAC 2 cut(s) 5, 60
Fnu4HI GCNGC 3 cut(s) 446, 453, 519
FokI GGATG 3 cut(s) 70, 85, 100
Fsp4HI GCNGC 3 cut(s) 446, 453, 519
GlaI GCGC 2 cut(s) 176, 196
GluI GCNGC 3 cut(s) 446, 453, 519
GsuI CTGGAG 2 cut(s) 155, 389
HaeIII GGCC 6 cut(s) 257, 324, 338, 410, 540, 744
HapII CCGG 3 cut(s) 66, 163, 424
HgaI GACGC 3 cut(s) 175, 205, 466
HhaI GCGC 2 cut(s) 177, 197
Hin1I GRCGYC 2 cut(s) 216, 458
Hin1II CATG 2 cut(s) 445, 626
Hin6I GCGC 2 cut(s) 175, 195
HinP1I GCGC 2 cut(s) 175, 195
HincII GTYRAC 3 cut(s) 61, 190, 333
HindII GTYRAC 3 cut(s) 61, 190, 333
HinfI GANTC 6 cut(s) 17, 155, 290, 309, 387, 574
HpaI GTTAAC 1 cut(s) 333
HpaII CCGG 3 cut(s) 66, 163, 424
HphI GGTGA 3 cut(s) 355, 535, 616
Hpy166II GTNNAC 6 cut(s) 6, 61, 190, 333, 481, 631
Hpy188I TCNGA 2 cut(s) 154, 160
Hpy188III TCNNGA 3 cut(s) 14, 306, 618
Hpy8I GTNNAC 6 cut(s) 6, 61, 190, 333, 481, 631
Hpy99I CGWCG 3 cut(s) 301, 460, 569
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 3 cut(s) 25, 301, 665
HpyCH4IV ACGT 4 cut(s) 341, 499, 546, 707
HpyCH4V TGCA 1 cut(s) 448
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 192, 254
HpyF3I CTNAG 3 cut(s) 180, 472, 599
HpySE526I ACGT 4 cut(s) 341, 499, 546, 707
Hsp92I GRCGYC 2 cut(s) 216, 458
Hsp92II CATG 2 cut(s) 445, 626
HspAI GCGC 2 cut(s) 175, 195
KpnI GGTACC 1 cut(s) 169
KspAI GTTAAC 1 cut(s) 333
Kzo9I GATC 3 cut(s) 136, 667, 711
LguI GCTCTTC 2 cut(s) 255, 422
LmnI GCTCC 1 cut(s) 227
Lsp1109I GCAGC 2 cut(s) 432, 439
MaeII ACGT 4 cut(s) 341, 499, 546, 707
MaeIII GTNAC 2 cut(s) 217, 542
MalI GATC 3 cut(s) 138, 669, 713
MbiI CCGCTC 1 cut(s) 126
MboI GATC 3 cut(s) 136, 667, 711
MboII GAAGA 2 cut(s) 242, 409
MhlI GDGCHC 1 cut(s) 707
MlyI GAGTC 5 cut(s) 11, 299, 303, 396, 583
MmeI TCCRAC 2 cut(s) 65, 132
MnlI CCTC 9 cut(s) 90, 104, 141, 179, 368, 413, 477, 480, 600
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 2 cut(s) 26, 242
MspI CCGG 3 cut(s) 66, 163, 424
MspR9I CCNGG 3 cut(s) 407, 412, 425
MvaI CCWGG 2 cut(s) 407, 412
MvnI CGCG 2 cut(s) 195, 518
MwoI GCNNNNNNNGC 3 cut(s) 183, 192, 254
NciI CCSGG 1 cut(s) 425
NdeII GATC 3 cut(s) 136, 667, 711
NlaIII CATG 2 cut(s) 445, 626
NlaIV GGNNCC 4 cut(s) 167, 325, 428, 491
NmuCI GTSAC 2 cut(s) 217, 542
OliI CACNNNNGTG 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 287
PciSI GCTCTTC 2 cut(s) 255, 422
PfeI GAWTC 1 cut(s) 155
PflFI GACNNNGTC 1 cut(s) 301
PinAI ACCGGT 1 cut(s) 162
PkrI GCNGC 3 cut(s) 447, 454, 520
PleI GAGTC 5 cut(s) 11, 298, 303, 395, 582
PmaCI CACGTG 2 cut(s) 342, 500
PmlI CACGTG 2 cut(s) 342, 500
PpsI GAGTC 5 cut(s) 11, 298, 303, 395, 582
Ppu21I YACGTR 2 cut(s) 342, 500
PshAI GACNNNNGTC 2 cut(s) 500, 573
Psp6I CCWGG 2 cut(s) 405, 410
PspCI CACGTG 2 cut(s) 342, 500
PspGI CCWGG 2 cut(s) 405, 410
PspN4I GGNNCC 4 cut(s) 167, 325, 428, 491
PspPI GGNCC 4 cut(s) 160, 323, 427, 743
PspXI VCTCGAGB 1 cut(s) 287
PstI CTGCAG 1 cut(s) 450
PsyI GACNNNGTC 1 cut(s) 301
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 2 cut(s) 26, 242
Rsr2I CGGWCCG 1 cut(s) 160
RsrII CGGWCCG 1 cut(s) 160
SalI GTCGAC 1 cut(s) 59
SapI GCTCTTC 2 cut(s) 255, 422
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 3 cut(s) 446, 453, 519
Sau3AI GATC 3 cut(s) 136, 667, 711
Sau96I GGNCC 4 cut(s) 160, 323, 427, 743
SchI GAGTC 5 cut(s) 11, 299, 303, 396, 583
ScrFI CCNGG 3 cut(s) 407, 412, 425
SduI GDGCHC 1 cut(s) 707
SfcI CTRYAG 1 cut(s) 446
Sfr274I CTCGAG 1 cut(s) 287
SinI GGWCC 2 cut(s) 160, 427
SlaI CTCGAG 1 cut(s) 287
SmiMI CAYNNNNRTG 2 cut(s) 26, 242
SmlI CTYRAG 2 cut(s) 12, 287
SmoI CTYRAG 2 cut(s) 12, 287
SsiI CCGC 4 cut(s) 124, 193, 518, 521
StyD4I CCNGG 3 cut(s) 405, 410, 423
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 3 cut(s) 25, 301, 665
TaiI ACGT 4 cut(s) 344, 502, 549, 710
TaqI TCGA 7 cut(s) 60, 288, 307, 504, 595, 660, 714
TauI GCSGC 1 cut(s) 521
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 2 cut(s) 325, 536
TseFI GTSAC 2 cut(s) 217, 542
TseI GCWGC 2 cut(s) 445, 452
Tsp45I GTSAC 2 cut(s) 217, 542
TspGWI ACGGA 1 cut(s) 280
TspRI CASTG 2 cut(s) 325, 536
Tth111I GACNNNGTC 1 cut(s) 301
VpaK11BI GGWCC 2 cut(s) 160, 427
XhoI CTCGAG 1 cut(s) 287
XmiI GTMKAC 2 cut(s) 5, 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.