Rh2BG108200

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0019067
Physical Location & Seq
Forward (+)
9130399 .. 9131139
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG108200.1

Sequence Viewer

Length: 741 bp
ATGTCCACGGCTCAAGACTCCACAGTAGTGATTGGATATCCAGCTGGGGCGTATCAAGTCGACACTGGCTACCCTTATCCTCCATCCCCTGCCAGCTCATCCCCTGCCCGCTCAAACTACGATCAACCCACGAGGTCGGAATCGGACCGGTACCTCCAGCGCACTAAGTGCGTCAACCGCGCAGTAGCTATATTACAAGGCGTCACTATTGGAGCCGTCATCATATGGATGGCTCTTCTGGCCTTGAGACGGAAAGACCCCGAGTTCAAGCTCGAGTCGGCGACGGTGTCTCGACTCAACGCCACTGGCCCCGAGTTAACGGCCACGTGGAACATCACTCTCCTCCTCACCAACCCCGACCACAGATACAGAGTCTCCTTCAAAACCCTCCAGGCCAGGCTCTTCTACCGGGACCATAGCCGTCCCATGCTGCAGGCTGCGACGCCGTTGCCTCCCTTAGTTGTGAACAAGAGGAACCAGACACGTGTCGATATGAAGCTCGCGGCGGTGAGCCAGTGGGTAGGCCGTGACGTGGGAAAGGAAATCTACGACGACAGGAGTCGGGGGCTTTTGAGTTTTCGACTTAGGGTGAGGGCTTGCTCTGGACATGATGTCCACAACTTTTCTCCAGGCTGGTGTCTTCGGTTCGACTGTGATCGGGTTTATATCGGGTTTTACCATAATGAGACGAGCACGTTGATCGAACCAAGAAAATGCGATTTATTGATTGGCCCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

246

Amino Acids

27.77

Weight (kDa)

9.62

Isoelectric Point (pI)

58.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019067)

Species Orthologous Gene IDs
rosa_laevigata RLG00000016649 RLG00000025794
rosa_multiflora Rmu_sc0004096.1_g000005
rosa_rugosa Rorug02G0058400
rosa_samantha Rh2AG105700 Rh2BG108200 Rh2CG110000 Rh2DG108800
rosa_wichuraiana Rw2G008180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 150
AccB1I GGYRCC 1 cut(s) 150
AccBSI CCGCTC 1 cut(s) 111
AccI GTMKAC 1 cut(s) 60
AccII CGCG 2 cut(s) 180, 503
AciI CCGC 4 cut(s) 109, 178, 503, 506
AcoI YGGCCR 1 cut(s) 321
AcvI CACGTG 2 cut(s) 327, 485
AcyI GRCGYC 2 cut(s) 201, 443
AdeI CACNNNGTG 1 cut(s) 168
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 249, 532
AflIII ACRYGT 2 cut(s) 482, 484
AgeI ACCGGT 1 cut(s) 147
AgsI TTSAA 2 cut(s) 268, 382
AhdI GACNNNNNGTC 1 cut(s) 611
AjiI CACGTC 1 cut(s) 532
AjnI CCWGG 3 cut(s) 390, 395, 628
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 5 cut(s) 44, 96, 188, 271, 499
AluI AGCT 5 cut(s) 44, 96, 188, 271, 499
Alw21I GWGCWC 1 cut(s) 695
Alw26I GTCTC 4 cut(s) 241, 294, 379, 680
Ama87I CYCGRG 3 cut(s) 260, 272, 311
AoxI GGCC 6 cut(s) 240, 307, 321, 393, 523, 730
ApeKI GCWGC 2 cut(s) 430, 437
AsiGI ACCGGT 1 cut(s) 147
Asp718I GGTACC 1 cut(s) 150
AspLEI GCGC 2 cut(s) 162, 182
AspS9I GGNCC 4 cut(s) 145, 308, 412, 731
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 3 cut(s) 340, 520, 601
AvaI CYCGRG 3 cut(s) 260, 272, 311
AvaII GGWCC 2 cut(s) 145, 412
BanI GGYRCC 1 cut(s) 150
BauI CACGAG 1 cut(s) 130
BbrPI CACGTG 2 cut(s) 327, 485
BbsI GAAGAC 1 cut(s) 632
Bbv12I GWGCWC 1 cut(s) 695
BbvI GCAGC 2 cut(s) 417, 424
BccI CCATC 2 cut(s) 91, 223
BceAI ACGGC 6 cut(s) 24, 200, 336, 405, 430, 510
BcgI CGANNNNNNTGC 4 cut(s) 430, 464, 682, 716
BciT130I CCWGG 3 cut(s) 392, 397, 630
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 4 cut(s) 241, 294, 379, 680
BfmI CTRYAG 1 cut(s) 431
BisI GCNGC 3 cut(s) 431, 438, 504
BlsI GCNGC 3 cut(s) 432, 439, 505
Bme1390I CCNGG 4 cut(s) 392, 397, 410, 630
Bme18I GGWCC 2 cut(s) 145, 412
BmeRI GACNNNNNGTC 1 cut(s) 611
BmeT110I CYCGRG 3 cut(s) 260, 272, 311
BmgBI CACGTC 1 cut(s) 532
BmgT120I GGNCC 4 cut(s) 145, 308, 412, 731
BmiI GGNNCC 5 cut(s) 152, 214, 310, 413, 476
BmrFI CCNGG 4 cut(s) 392, 397, 410, 630
BoxI GACNNNNGTC 2 cut(s) 485, 558
BpiI GAAGAC 1 cut(s) 632
BpmI CTGGAG 3 cut(s) 140, 374, 612
BpuEI CTTGAG 1 cut(s) 265
BpuMI CCSGG 1 cut(s) 410
BsaAI YACGTR 2 cut(s) 327, 485
BsaHI GRCGYC 2 cut(s) 201, 443
BsaJI CCNNGG 1 cut(s) 6
BsaWI WCCGGW 1 cut(s) 147
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 532
Bse118I RCCGGY 1 cut(s) 147
Bse1I ACTGG 3 cut(s) 70, 310, 514
BseBI CCWGG 3 cut(s) 392, 397, 630
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 3 cut(s) 83, 98, 234
BseLI CCNNNNNNNGG 2 cut(s) 249, 532
BseNI ACTGG 3 cut(s) 70, 310, 514
BseRI GAGGAG 2 cut(s) 332, 335
BseXI GCAGC 2 cut(s) 417, 424
BseYI CCCAGC 1 cut(s) 44
Bsh1236I CGCG 2 cut(s) 180, 503
BshFI GGCC 6 cut(s) 242, 309, 323, 395, 525, 732
BshNI GGYRCC 1 cut(s) 150
BshTI ACCGGT 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 695
BsiHKCI CYCGRG 3 cut(s) 260, 272, 311
BsiSI CCGG 2 cut(s) 148, 409
BslFI GGGAC 2 cut(s) 408, 425
BslI CCNNNNNNNGG 2 cut(s) 249, 532
BsmAI GTCTC 4 cut(s) 241, 294, 379, 680
BsmBI CGTCTC 2 cut(s) 241, 680
BsmFI GGGAC 2 cut(s) 408, 425
BsnI GGCC 6 cut(s) 242, 309, 323, 395, 525, 732
BsoBI CYCGRG 3 cut(s) 260, 272, 311
Bsp1286I GDGCHC 1 cut(s) 695
Bsp143I GATC 3 cut(s) 121, 655, 699
BspACI CCGC 4 cut(s) 109, 178, 503, 506
BspANI GGCC 6 cut(s) 242, 309, 323, 395, 525, 732
BspFNI CGCG 2 cut(s) 180, 503
BspLI GGNNCC 5 cut(s) 152, 214, 310, 413, 476
BspMAI CTGCAG 1 cut(s) 435
BspQI GCTCTTC 2 cut(s) 240, 407
BspT107I GGYRCC 1 cut(s) 150
BsrBI CCGCTC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 147
BsrI ACTGG 3 cut(s) 70, 310, 514
BssAI RCCGGY 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 3 cut(s) 121, 655, 699
BssNI GRCGYC 2 cut(s) 201, 443
BssSI CACGAG 1 cut(s) 130
Bst2BI CACGAG 1 cut(s) 130
Bst2UI CCWGG 3 cut(s) 392, 397, 630
Bst4CI ACNGT 3 cut(s) 25, 286, 653
Bst6I CTCTTC 2 cut(s) 240, 407
BstACI GRCGYC 2 cut(s) 201, 443
BstAPI GCANNNNNTGC 1 cut(s) 168
BstBAI YACGTR 2 cut(s) 327, 485
BstC8I GCNNGC 5 cut(s) 94, 109, 435, 501, 598
BstDEI CTNAG 3 cut(s) 165, 457, 584
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 3 cut(s) 83, 98, 234
BstFNI CGCG 2 cut(s) 180, 503
BstHHI GCGC 2 cut(s) 162, 182
BstKTI GATC 3 cut(s) 124, 658, 702
BstMAI GTCTC 4 cut(s) 241, 294, 379, 680
BstMBI GATC 3 cut(s) 121, 655, 699
BstMWI GCNNNNNNNGC 3 cut(s) 168, 177, 239
BstNI CCWGG 3 cut(s) 392, 397, 630
BstPAI GACNNNNGTC 2 cut(s) 485, 558
BstSCI CCNGG 4 cut(s) 390, 395, 408, 628
BstSFI CTRYAG 1 cut(s) 431
BstUI CGCG 2 cut(s) 180, 503
BstV1I GCAGC 2 cut(s) 417, 424
BstV2I GAAGAC 1 cut(s) 632
BsuRI GGCC 6 cut(s) 242, 309, 323, 395, 525, 732
BtgI CCRYGG 1 cut(s) 6
BtrI CACGTC 1 cut(s) 532
BtsCI GGATG 3 cut(s) 83, 98, 234
BtsIMutI CAGTG 3 cut(s) 63, 303, 521
Cac8I GCNNGC 5 cut(s) 94, 109, 435, 501, 598
CfoI GCGC 2 cut(s) 162, 182
Cfr10I RCCGGY 1 cut(s) 147
Cfr13I GGNCC 4 cut(s) 145, 308, 412, 731
CpoI CGGWCCG 1 cut(s) 145
CseI GACGC 3 cut(s) 160, 190, 451
Csp6I GTAC 1 cut(s) 151
CspAI ACCGGT 1 cut(s) 147
CspI CGGWCCG 1 cut(s) 145
CviAII CATG 2 cut(s) 427, 608
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 3 cut(s) 165, 457, 584
DpnI GATC 3 cut(s) 123, 657, 701
DpnII GATC 3 cut(s) 121, 655, 699
DraIII CACNNNGTG 1 cut(s) 168
DriI GACNNNNNGTC 1 cut(s) 611
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 2 cut(s) 240, 407
Eam1105I GACNNNNNGTC 1 cut(s) 611
EarI CTCTTC 2 cut(s) 240, 407
Eco32I GATATC 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 145, 412
Eco72I CACGTG 2 cut(s) 327, 485
Eco88I CYCGRG 3 cut(s) 260, 272, 311
EcoRII CCWGG 3 cut(s) 390, 395, 628
EcoRV GATATC 1 cut(s) 38
Esp3I CGTCTC 2 cut(s) 241, 680
FaeI CATG 2 cut(s) 430, 611
FaiI YATR 9 cut(s) 191, 224, 226, 417, 428, 494, 609, 666, 681
FaqI GGGAC 2 cut(s) 408, 425
FatI CATG 2 cut(s) 426, 607
FauI CCCGC 1 cut(s) 116
FauNDI CATATG 1 cut(s) 224
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 3 cut(s) 431, 438, 504
FokI GGATG 3 cut(s) 70, 85, 241
Fsp4HI GCNGC 3 cut(s) 431, 438, 504
GlaI GCGC 2 cut(s) 161, 181
GluI GCNGC 3 cut(s) 431, 438, 504
GsaI CCCAGC 1 cut(s) 48
GsuI CTGGAG 3 cut(s) 140, 374, 612
HaeIII GGCC 6 cut(s) 242, 309, 323, 395, 525, 732
HapII CCGG 2 cut(s) 148, 409
HgaI GACGC 3 cut(s) 160, 190, 451
HhaI GCGC 2 cut(s) 162, 182
Hin1I GRCGYC 2 cut(s) 201, 443
Hin1II CATG 2 cut(s) 430, 611
Hin6I GCGC 2 cut(s) 160, 180
HinP1I GCGC 2 cut(s) 160, 180
HincII GTYRAC 3 cut(s) 61, 175, 318
HindII GTYRAC 3 cut(s) 61, 175, 318
HinfI GANTC 6 cut(s) 17, 140, 275, 294, 372, 559
HpaI GTTAAC 1 cut(s) 318
HpaII CCGG 2 cut(s) 148, 409
HphI GGTGA 3 cut(s) 340, 520, 601
Hpy166II GTNNAC 6 cut(s) 6, 61, 175, 318, 466, 616
Hpy188I TCNGA 2 cut(s) 139, 145
Hpy188III TCNNGA 3 cut(s) 14, 291, 603
Hpy8I GTNNAC 6 cut(s) 6, 61, 175, 318, 466, 616
Hpy99I CGWCG 3 cut(s) 286, 445, 554
HpyAV CCTTC 1 cut(s) 388
HpyCH4III ACNGT 3 cut(s) 25, 286, 653
HpyCH4IV ACGT 4 cut(s) 326, 484, 531, 695
HpyCH4V TGCA 1 cut(s) 433
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 177, 239
HpyF3I CTNAG 3 cut(s) 165, 457, 584
HpySE526I ACGT 4 cut(s) 326, 484, 531, 695
Hsp92I GRCGYC 2 cut(s) 201, 443
Hsp92II CATG 2 cut(s) 430, 611
HspAI GCGC 2 cut(s) 160, 180
KpnI GGTACC 1 cut(s) 154
KspAI GTTAAC 1 cut(s) 318
Kzo9I GATC 3 cut(s) 121, 655, 699
LguI GCTCTTC 2 cut(s) 240, 407
LmnI GCTCC 1 cut(s) 212
Lsp1109I GCAGC 2 cut(s) 417, 424
MaeII ACGT 4 cut(s) 326, 484, 531, 695
MaeIII GTNAC 2 cut(s) 202, 527
MalI GATC 3 cut(s) 123, 657, 701
MbiI CCGCTC 1 cut(s) 111
MboI GATC 3 cut(s) 121, 655, 699
MboII GAAGA 3 cut(s) 227, 394, 632
MhlI GDGCHC 1 cut(s) 695
MlyI GAGTC 5 cut(s) 11, 284, 288, 381, 568
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 9 cut(s) 90, 126, 164, 353, 356, 398, 462, 465, 585
MseI TTAA 1 cut(s) 317
MslI CAYNNNNRTG 2 cut(s) 26, 227
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 2 cut(s) 148, 409
MspR9I CCNGG 4 cut(s) 392, 397, 410, 630
MvaI CCWGG 3 cut(s) 392, 397, 630
MvnI CGCG 2 cut(s) 180, 503
MwoI GCNNNNNNNGC 3 cut(s) 168, 177, 239
NciI CCSGG 1 cut(s) 410
NdeI CATATG 1 cut(s) 224
NdeII GATC 3 cut(s) 121, 655, 699
NlaIII CATG 2 cut(s) 430, 611
NlaIV GGNNCC 5 cut(s) 152, 214, 310, 413, 476
NmuCI GTSAC 2 cut(s) 202, 527
OliI CACNNNNGTG 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 272
PciSI GCTCTTC 2 cut(s) 240, 407
PfeI GAWTC 1 cut(s) 140
PflFI GACNNNGTC 1 cut(s) 286
PinAI ACCGGT 1 cut(s) 147
PkrI GCNGC 3 cut(s) 432, 439, 505
PleI GAGTC 5 cut(s) 11, 283, 288, 380, 567
PmaCI CACGTG 2 cut(s) 327, 485
PmlI CACGTG 2 cut(s) 327, 485
PpsI GAGTC 5 cut(s) 11, 283, 288, 380, 567
Ppu21I YACGTR 2 cut(s) 327, 485
PshAI GACNNNNGTC 2 cut(s) 485, 558
Psp6I CCWGG 3 cut(s) 390, 395, 628
PspCI CACGTG 2 cut(s) 327, 485
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 3 cut(s) 390, 395, 628
PspN4I GGNNCC 5 cut(s) 152, 214, 310, 413, 476
PspPI GGNCC 4 cut(s) 145, 308, 412, 731
PspXI VCTCGAGB 1 cut(s) 272
PstI CTGCAG 1 cut(s) 435
PsyI GACNNNGTC 1 cut(s) 286
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 2 cut(s) 26, 227
Rsr2I CGGWCCG 1 cut(s) 145
RsrII CGGWCCG 1 cut(s) 145
SalI GTCGAC 1 cut(s) 59
SapI GCTCTTC 2 cut(s) 240, 407
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 3 cut(s) 431, 438, 504
Sau3AI GATC 3 cut(s) 121, 655, 699
Sau96I GGNCC 4 cut(s) 145, 308, 412, 731
SchI GAGTC 5 cut(s) 11, 284, 288, 381, 568
ScrFI CCNGG 4 cut(s) 392, 397, 410, 630
SduI GDGCHC 1 cut(s) 695
SfcI CTRYAG 1 cut(s) 431
Sfr274I CTCGAG 1 cut(s) 272
SinI GGWCC 2 cut(s) 145, 412
SlaI CTCGAG 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 26, 227
SmlI CTYRAG 3 cut(s) 12, 244, 272
SmoI CTYRAG 3 cut(s) 12, 244, 272
SsiI CCGC 4 cut(s) 109, 178, 503, 506
StyD4I CCNGG 4 cut(s) 390, 395, 408, 628
TaaI ACNGT 3 cut(s) 25, 286, 653
TaiI ACGT 4 cut(s) 329, 487, 534, 698
TaqI TCGA 7 cut(s) 60, 273, 292, 489, 580, 648, 702
TauI GCSGC 1 cut(s) 506
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 3 cut(s) 70, 310, 521
TseFI GTSAC 2 cut(s) 202, 527
TseI GCWGC 2 cut(s) 430, 437
Tsp45I GTSAC 2 cut(s) 202, 527
TspDTI ATGAA 1 cut(s) 509
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 3 cut(s) 70, 310, 521
Tth111I GACNNNGTC 1 cut(s) 286
VpaK11BI GGWCC 2 cut(s) 145, 412
XhoI CTCGAG 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.