Rh2DG108800

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0019067
Physical Location & Seq
Forward (+)
8953580 .. 8954302
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG108800.1

Sequence Viewer

Length: 723 bp
ATGTCTACGGCTCAAGACTCCACAGTAGTGATTGGATATCCAGCTGGGGCGTATCAAGTCGACACCGGCTACCCTTATCCTCCATCCCCTGCCAGCTCAAACTACGATCAACCCACGAGGTCGGAATCGGACCGGTACCTCCAGCGCACTAAGTGCGTCAACCGCGCAGTAGCTATATTACAAGGCGTCACTATTGGAGCCGTCATCATATGGATGGCTCTTCTGGCCTTGATCCGGAAAGACCCCGAGTTCAAGCTCGAGTCGGCGACGGTGTCTCGACTCAACGCCACTGGCCCCGAGTTAACGGCCACGTGGAACATCACTCTCCTCATCACCAACCCCGACCACAGATACAGAGTCTCCTTCAAAACCCTCCAGGCCAGGCTCTTCTACCGGGACCATAGCCGTCCCATGCTGCAGGCTGCGACGCCGTTGCCTCCCTTAGTTGTGAACAGGAGGAACCAGACACGTGTCGATATGAAGCTCGCGGCGGTGAGCCAGTGGGTAGGGCGTGACGTGGGAAAGGAAATCTACGACGACAGGAGTCGGGGGCTTCTGAGTTTTCGACTTAGGGTGAGGGCTTGCTCTGGACATGATGTCCACAACCTTTTTACAGGCTGTTTTCGGTTCGACTGTGATCAGGTTTATATCGGGTTTTACCATAATGAGACGGGCACGTTGATCGAACCAAGAAAATGTGATTTATTGATTGGCCCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

240

Amino Acids

27.08

Weight (kDa)

9.35

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019067)

Species Orthologous Gene IDs
rosa_laevigata RLG00000016649 RLG00000025794
rosa_multiflora Rmu_sc0004096.1_g000005
rosa_rugosa Rorug02G0058400
rosa_samantha Rh2AG105700 Rh2BG108200 Rh2CG110000 Rh2DG108800
rosa_wichuraiana Rw2G008180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 135
AccI GTMKAC 2 cut(s) 5, 60
AccII CGCG 2 cut(s) 165, 488
AccIII TCCGGA 1 cut(s) 234
AciI CCGC 3 cut(s) 163, 488, 491
AclWI GGATC 1 cut(s) 226
AcoI YGGCCR 1 cut(s) 306
AcvI CACGTG 2 cut(s) 312, 470
AcyI GRCGYC 2 cut(s) 186, 428
AdeI CACNNNGTG 1 cut(s) 153
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 234
AflIII ACRYGT 2 cut(s) 467, 469
AgeI ACCGGT 1 cut(s) 132
AgsI TTSAA 2 cut(s) 253, 367
AhdI GACNNNNNGTC 1 cut(s) 596
AjiI CACGTC 1 cut(s) 517
AjnI CCWGG 2 cut(s) 375, 380
AleI CACNNNNGTG 1 cut(s) 26
AluBI AGCT 5 cut(s) 44, 96, 173, 256, 484
AluI AGCT 5 cut(s) 44, 96, 173, 256, 484
Alw26I GTCTC 3 cut(s) 279, 364, 662
AlwI GGATC 1 cut(s) 226
Ama87I CYCGRG 3 cut(s) 245, 257, 296
Aor13HI TCCGGA 1 cut(s) 234
AoxI GGCC 5 cut(s) 225, 292, 306, 378, 712
ApeKI GCWGC 2 cut(s) 415, 422
AsiGI ACCGGT 1 cut(s) 132
Asp718I GGTACC 1 cut(s) 135
AspLEI GCGC 2 cut(s) 147, 167
AspS9I GGNCC 4 cut(s) 130, 293, 397, 713
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 3 cut(s) 325, 505, 586
AvaI CYCGRG 3 cut(s) 245, 257, 296
AvaII GGWCC 2 cut(s) 130, 397
BaeGI GKGCMC 1 cut(s) 677
BanI GGYRCC 1 cut(s) 135
BauI CACGAG 1 cut(s) 115
BbrPI CACGTG 2 cut(s) 312, 470
BbvI GCAGC 2 cut(s) 402, 409
BccI CCATC 2 cut(s) 91, 208
BceAI ACGGC 5 cut(s) 24, 185, 321, 390, 415
BcgI CGANNNNNNTGC 4 cut(s) 415, 449, 664, 698
BciT130I CCWGG 2 cut(s) 377, 382
BclI TGATCA 1 cut(s) 637
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 3 cut(s) 279, 364, 662
BfmI CTRYAG 1 cut(s) 416
BisI GCNGC 3 cut(s) 416, 423, 489
BlsI GCNGC 3 cut(s) 417, 424, 490
Bme1390I CCNGG 3 cut(s) 377, 382, 395
Bme18I GGWCC 2 cut(s) 130, 397
BmeRI GACNNNNNGTC 1 cut(s) 596
BmeT110I CYCGRG 3 cut(s) 245, 257, 296
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 4 cut(s) 130, 293, 397, 713
BmiI GGNNCC 5 cut(s) 137, 199, 295, 398, 461
BmrFI CCNGG 3 cut(s) 377, 382, 395
BoxI GACNNNNGTC 2 cut(s) 470, 543
BpmI CTGGAG 2 cut(s) 125, 359
BpuMI CCSGG 1 cut(s) 395
BsaAI YACGTR 2 cut(s) 312, 470
BsaHI GRCGYC 2 cut(s) 186, 428
BsaWI WCCGGW 2 cut(s) 132, 234
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse118I RCCGGY 2 cut(s) 65, 132
Bse1I ACTGG 2 cut(s) 295, 499
BseAI TCCGGA 1 cut(s) 234
BseBI CCWGG 2 cut(s) 377, 382
BseGI GGATG 2 cut(s) 83, 219
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 548
BseNI ACTGG 2 cut(s) 295, 499
BseRI GAGGAG 1 cut(s) 317
BseSI GKGCMC 1 cut(s) 677
BseXI GCAGC 2 cut(s) 402, 409
BseYI CCCAGC 1 cut(s) 44
Bsh1236I CGCG 2 cut(s) 165, 488
BshFI GGCC 5 cut(s) 227, 294, 308, 380, 714
BshNI GGYRCC 1 cut(s) 135
BshTI ACCGGT 1 cut(s) 132
BsiHKCI CYCGRG 3 cut(s) 245, 257, 296
BsiSI CCGG 4 cut(s) 66, 133, 235, 394
BslFI GGGAC 2 cut(s) 393, 410
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 3 cut(s) 279, 364, 662
BsmBI CGTCTC 1 cut(s) 662
BsmFI GGGAC 2 cut(s) 393, 410
BsnI GGCC 5 cut(s) 227, 294, 308, 380, 714
BsoBI CYCGRG 3 cut(s) 245, 257, 296
Bsp1286I GDGCHC 1 cut(s) 677
Bsp13I TCCGGA 1 cut(s) 234
Bsp143I GATC 4 cut(s) 106, 231, 637, 681
BspACI CCGC 3 cut(s) 163, 488, 491
BspANI GGCC 5 cut(s) 227, 294, 308, 380, 714
BspCNI CTCAG 1 cut(s) 549
BspEI TCCGGA 1 cut(s) 234
BspFNI CGCG 2 cut(s) 165, 488
BspLI GGNNCC 5 cut(s) 137, 199, 295, 398, 461
BspMAI CTGCAG 1 cut(s) 420
BspPI GGATC 1 cut(s) 226
BspQI GCTCTTC 2 cut(s) 225, 392
BspT107I GGYRCC 1 cut(s) 135
BsrFI RCCGGY 2 cut(s) 65, 132
BsrI ACTGG 2 cut(s) 295, 499
BssAI RCCGGY 2 cut(s) 65, 132
BssMI GATC 4 cut(s) 106, 231, 637, 681
BssNI GRCGYC 2 cut(s) 186, 428
BssSI CACGAG 1 cut(s) 115
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 377, 382
Bst4CI ACNGT 3 cut(s) 25, 271, 635
Bst6I CTCTTC 2 cut(s) 225, 392
BstACI GRCGYC 2 cut(s) 186, 428
BstAPI GCANNNNNTGC 1 cut(s) 153
BstBAI YACGTR 2 cut(s) 312, 470
BstC8I GCNNGC 4 cut(s) 94, 420, 486, 583
BstDEI CTNAG 4 cut(s) 150, 442, 557, 569
BstF5I GGATG 2 cut(s) 83, 219
BstFNI CGCG 2 cut(s) 165, 488
BstHHI GCGC 2 cut(s) 147, 167
BstKTI GATC 4 cut(s) 109, 234, 640, 684
BstMAI GTCTC 3 cut(s) 279, 364, 662
BstMBI GATC 4 cut(s) 106, 231, 637, 681
BstMWI GCNNNNNNNGC 3 cut(s) 153, 162, 224
BstNI CCWGG 2 cut(s) 377, 382
BstPAI GACNNNNGTC 2 cut(s) 470, 543
BstSCI CCNGG 3 cut(s) 375, 380, 393
BstSFI CTRYAG 1 cut(s) 416
BstSLI GKGCMC 1 cut(s) 677
BstUI CGCG 2 cut(s) 165, 488
BstV1I GCAGC 2 cut(s) 402, 409
BsuRI GGCC 5 cut(s) 227, 294, 308, 380, 714
BtrI CACGTC 1 cut(s) 517
BtsCI GGATG 2 cut(s) 83, 219
BtsIMutI CAGTG 2 cut(s) 288, 506
Cac8I GCNNGC 4 cut(s) 94, 420, 486, 583
CfoI GCGC 2 cut(s) 147, 167
Cfr10I RCCGGY 2 cut(s) 65, 132
Cfr13I GGNCC 4 cut(s) 130, 293, 397, 713
CpoI CGGWCCG 1 cut(s) 130
CseI GACGC 3 cut(s) 145, 175, 436
Csp6I GTAC 1 cut(s) 136
CspAI ACCGGT 1 cut(s) 132
CspI CGGWCCG 1 cut(s) 130
CviAII CATG 2 cut(s) 412, 593
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 4 cut(s) 150, 442, 557, 569
DpnI GATC 4 cut(s) 108, 233, 639, 683
DpnII GATC 4 cut(s) 106, 231, 637, 681
DraIII CACNNNGTG 1 cut(s) 153
DriI GACNNNNNGTC 1 cut(s) 596
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 2 cut(s) 225, 392
Eam1105I GACNNNNNGTC 1 cut(s) 596
EarI CTCTTC 2 cut(s) 225, 392
Eco32I GATATC 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 130, 397
Eco72I CACGTG 2 cut(s) 312, 470
Eco88I CYCGRG 3 cut(s) 245, 257, 296
EcoRII CCWGG 2 cut(s) 375, 380
EcoRV GATATC 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 662
FaeI CATG 2 cut(s) 415, 596
FaiI YATR 9 cut(s) 176, 209, 211, 402, 413, 479, 594, 648, 663
FaqI GGGAC 2 cut(s) 393, 410
FatI CATG 2 cut(s) 411, 592
FauNDI CATATG 1 cut(s) 209
FbaI TGATCA 1 cut(s) 637
FblI GTMKAC 2 cut(s) 5, 60
Fnu4HI GCNGC 3 cut(s) 416, 423, 489
FokI GGATG 2 cut(s) 70, 226
Fsp4HI GCNGC 3 cut(s) 416, 423, 489
GlaI GCGC 2 cut(s) 146, 166
GluI GCNGC 3 cut(s) 416, 423, 489
GsaI CCCAGC 1 cut(s) 48
GsuI CTGGAG 2 cut(s) 125, 359
HaeIII GGCC 5 cut(s) 227, 294, 308, 380, 714
HapII CCGG 4 cut(s) 66, 133, 235, 394
HgaI GACGC 3 cut(s) 145, 175, 436
HhaI GCGC 2 cut(s) 147, 167
Hin1I GRCGYC 2 cut(s) 186, 428
Hin1II CATG 2 cut(s) 415, 596
Hin6I GCGC 2 cut(s) 145, 165
HinP1I GCGC 2 cut(s) 145, 165
HincII GTYRAC 3 cut(s) 61, 160, 303
HindII GTYRAC 3 cut(s) 61, 160, 303
HinfI GANTC 6 cut(s) 17, 125, 260, 279, 357, 544
HpaI GTTAAC 1 cut(s) 303
HpaII CCGG 4 cut(s) 66, 133, 235, 394
HphI GGTGA 3 cut(s) 325, 505, 586
Hpy166II GTNNAC 6 cut(s) 6, 61, 160, 303, 451, 601
Hpy188I TCNGA 3 cut(s) 124, 130, 558
Hpy188III TCNNGA 4 cut(s) 14, 235, 276, 588
Hpy8I GTNNAC 6 cut(s) 6, 61, 160, 303, 451, 601
Hpy99I CGWCG 3 cut(s) 271, 430, 539
HpyAV CCTTC 1 cut(s) 373
HpyCH4III ACNGT 3 cut(s) 25, 271, 635
HpyCH4IV ACGT 4 cut(s) 311, 469, 516, 677
HpyCH4V TGCA 1 cut(s) 418
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 162, 224
HpyF3I CTNAG 4 cut(s) 150, 442, 557, 569
HpySE526I ACGT 4 cut(s) 311, 469, 516, 677
Hsp92I GRCGYC 2 cut(s) 186, 428
Hsp92II CATG 2 cut(s) 415, 596
HspAI GCGC 2 cut(s) 145, 165
Kpn2I TCCGGA 1 cut(s) 234
KpnI GGTACC 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 637
KspAI GTTAAC 1 cut(s) 303
Kzo9I GATC 4 cut(s) 106, 231, 637, 681
LguI GCTCTTC 2 cut(s) 225, 392
LmnI GCTCC 1 cut(s) 197
Lsp1109I GCAGC 2 cut(s) 402, 409
MaeII ACGT 4 cut(s) 311, 469, 516, 677
MaeIII GTNAC 2 cut(s) 187, 512
MalI GATC 4 cut(s) 108, 233, 639, 683
MboI GATC 4 cut(s) 106, 231, 637, 681
MboII GAAGA 2 cut(s) 212, 379
MhlI GDGCHC 1 cut(s) 677
MlyI GAGTC 5 cut(s) 11, 269, 273, 366, 553
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 8 cut(s) 90, 111, 149, 338, 383, 447, 450, 570
MroI TCCGGA 1 cut(s) 234
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 2 cut(s) 26, 212
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 4 cut(s) 66, 133, 235, 394
MspR9I CCNGG 3 cut(s) 377, 382, 395
MvaI CCWGG 2 cut(s) 377, 382
MvnI CGCG 2 cut(s) 165, 488
MwoI GCNNNNNNNGC 3 cut(s) 153, 162, 224
NciI CCSGG 1 cut(s) 395
NdeI CATATG 1 cut(s) 209
NdeII GATC 4 cut(s) 106, 231, 637, 681
NlaIII CATG 2 cut(s) 415, 596
NlaIV GGNNCC 5 cut(s) 137, 199, 295, 398, 461
NmuCI GTSAC 2 cut(s) 187, 512
OliI CACNNNNGTG 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 257
PciSI GCTCTTC 2 cut(s) 225, 392
PfeI GAWTC 1 cut(s) 125
PflFI GACNNNGTC 1 cut(s) 271
PinAI ACCGGT 1 cut(s) 132
PkrI GCNGC 3 cut(s) 417, 424, 490
PleI GAGTC 5 cut(s) 11, 268, 273, 365, 552
PmaCI CACGTG 2 cut(s) 312, 470
PmlI CACGTG 2 cut(s) 312, 470
PpsI GAGTC 5 cut(s) 11, 268, 273, 365, 552
Ppu21I YACGTR 2 cut(s) 312, 470
PshAI GACNNNNGTC 2 cut(s) 470, 543
Psp6I CCWGG 2 cut(s) 375, 380
PspCI CACGTG 2 cut(s) 312, 470
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 2 cut(s) 375, 380
PspN4I GGNNCC 5 cut(s) 137, 199, 295, 398, 461
PspPI GGNCC 4 cut(s) 130, 293, 397, 713
PspXI VCTCGAGB 1 cut(s) 257
PstI CTGCAG 1 cut(s) 420
PsyI GACNNNGTC 1 cut(s) 271
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
RseI CAYNNNNRTG 2 cut(s) 26, 212
Rsr2I CGGWCCG 1 cut(s) 130
RsrII CGGWCCG 1 cut(s) 130
SalI GTCGAC 1 cut(s) 59
SapI GCTCTTC 2 cut(s) 225, 392
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 3 cut(s) 416, 423, 489
Sau3AI GATC 4 cut(s) 106, 231, 637, 681
Sau96I GGNCC 4 cut(s) 130, 293, 397, 713
SchI GAGTC 5 cut(s) 11, 269, 273, 366, 553
ScrFI CCNGG 3 cut(s) 377, 382, 395
SduI GDGCHC 1 cut(s) 677
SfcI CTRYAG 1 cut(s) 416
Sfr274I CTCGAG 1 cut(s) 257
SinI GGWCC 2 cut(s) 130, 397
SlaI CTCGAG 1 cut(s) 257
SmiMI CAYNNNNRTG 2 cut(s) 26, 212
SmlI CTYRAG 2 cut(s) 12, 257
SmoI CTYRAG 2 cut(s) 12, 257
SsiI CCGC 3 cut(s) 163, 488, 491
StyD4I CCNGG 3 cut(s) 375, 380, 393
TaaI ACNGT 3 cut(s) 25, 271, 635
TaiI ACGT 4 cut(s) 314, 472, 519, 680
TaqI TCGA 7 cut(s) 60, 258, 277, 474, 565, 630, 684
TauI GCSGC 1 cut(s) 491
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 2 cut(s) 295, 506
TseFI GTSAC 2 cut(s) 187, 512
TseI GCWGC 2 cut(s) 415, 422
Tsp45I GTSAC 2 cut(s) 187, 512
TspDTI ATGAA 1 cut(s) 494
TspRI CASTG 2 cut(s) 295, 506
Tth111I GACNNNGTC 1 cut(s) 271
VpaK11BI GGWCC 2 cut(s) 130, 397
XhoI CTCGAG 1 cut(s) 257
XmiI GTMKAC 2 cut(s) 5, 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.