Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0018964

Physical Location & Seq

Genomic Coordinates Reverse (-)

25534371 .. 25543491

Gene Structure 9121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018123

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCTTCAGTTATCCTCATGTTGAATAGCTACTCTCTGAGTCTCCCAGTACCCTTAAAACCAGCATTTTTAATGTATAGTAGCGTCGGATCTAGGAGAAACTTTGTCTCTCTCGAAGTAACCGAAAATGATGATGCTTCATTAATCACTGAAGCACATCTCGAATTCCCGATTGAATCTCTCTCTCTCTTACTCCGGCACATCCCGATTGAATCCGAAATCTTCGAAATTCTGGCAACAATTGTAGCCATTTTCTTCCTTGCAGCAGAGTCCTTCACTCCCCCAACAGACAATCTTCTCCCTGGAGAAATCCGCCACCAAAGGCTTCGGCGAACCGACGAAGGGGTGGCGGCTAGCGATAGGGCTGATTCCGGCGACGGTAAGCTTCCCAATGGAGAAGAGATAGCAGTGAAAAGGCTCTCTATGGATTCTGGACAAGGAGATTTAGAATTCAAAAATGATGTCTTACTAGTGGCTAGGCTTCAACACAGAAATTTAGTTAAGACTTCTCGATTTTTGCTTGGAAGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

178

Amino Acids

19.66

Weight (kDa)

5.4

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018964)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0114801 RchiOBHm_Chr2g0114851
rosa_laevigata	RLG00000018123
rosa_roxburghii	Rroxscaffold_2G00130340 Rroxscaffold_7G00169110 Rroxscaffold_7G00185000
rosa_rugosa	Rorug06G0159800
rosa_samantha	Rh3AG322600 Rh4AG260500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	313, 350
AclWI	GGATC	1 cut(s)	97
AcsI	RAATTY	4 cut(s)	164, 228, 449, 493
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	5 cut(s)	25, 176, 212, 454, 485
AhlI	ACTAGT	1 cut(s)	469
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	2 cut(s)	30, 385
AluI	AGCT	2 cut(s)	30, 385
Alw26I	GTCTC	2 cut(s)	47, 112
AlwI	GGATC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	4 cut(s)	164, 228, 449, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	447, 479
AseI	ATTAAT	1 cut(s)	143
AsuII	TTCGAA	1 cut(s)	225
AsuNHI	GCTAGC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	303
BcoDI	GTCTC	2 cut(s)	47, 112
BcuI	ACTAGT	1 cut(s)	469
BfaI	CTAG	4 cut(s)	93, 354, 470, 477
BisI	GCNGC	2 cut(s)	264, 351
BlsI	GCNGC	2 cut(s)	265, 352
Bme1390I	CCNGG	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	124
BmtI	GCTAGC	1 cut(s)	357
BmuI	ACTGGG	1 cut(s)	41
BpmI	CTGGAG	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	196, 372
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	2 cut(s)	47, 112
Bsp119I	TTCGAA	1 cut(s)	225
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	2 cut(s)	313, 350
BspCNI	CTCAG	1 cut(s)	30
BspOI	GCTAGC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	97
BspT104I	TTCGAA	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	1 cut(s)	393
BstBI	TTCGAA	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	201
BstKTI	GATC	1 cut(s)	92
BstMAI	GTCTC	2 cut(s)	47, 112
BstMBI	GATC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	201
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	2 cut(s)	147, 414
Cac8I	GCNNGC	1 cut(s)	355
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	1 cut(s)	19
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
EciI	GGCGGA	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	171
EcoRI	GAATTC	2 cut(s)	164, 449
EcoRII	CCWGG	1 cut(s)	301
FaeI	CATG	1 cut(s)	22
FaiI	YATR	3 cut(s)	20, 78, 425
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	264, 351
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	264, 351
FspBI	CTAG	4 cut(s)	93, 354, 470, 477
GluI	GCNGC	2 cut(s)	264, 351
GsuI	CTGGAG	1 cut(s)	324
HapII	CCGG	2 cut(s)	196, 372
HgaI	GACGC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	6 cut(s)	40, 176, 212, 269, 368, 428
HpaII	CCGG	2 cut(s)	196, 372
Hpy188I	TCNGA	3 cut(s)	39, 89, 217
Hpy188III	TCNNGA	6 cut(s)	113, 161, 169, 205, 432, 510
Hpy99I	CGWCG	3 cut(s)	89, 341, 380
HpyAV	CCTTC	3 cut(s)	283, 335, 519
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4V	TGCA	1 cut(s)	263
HpyF3I	CTNAG	1 cut(s)	38
Hsp92II	CATG	1 cut(s)	22
Kzo9I	GATC	1 cut(s)	89
LpnPI	CCDG	8 cut(s)	60, 75, 209, 218, 288, 315, 385, 417
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	4 cut(s)	93, 354, 470, 477
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	4 cut(s)	214, 247, 287, 410
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	89
MluCI	AATT	5 cut(s)	164, 228, 240, 449, 493
MlyI	GAGTC	2 cut(s)	49, 278
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	1 cut(s)	26
MseI	TTAA	4 cut(s)	56, 71, 143, 501
MspI	CCGG	2 cut(s)	196, 372
MspR9I	CCNGG	1 cut(s)	303
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	303
NdeII	GATC	1 cut(s)	89
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	1 cut(s)	22
NspV	TTCGAA	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	4 cut(s)	176, 212, 368, 428
PkrI	GCNGC	2 cut(s)	265, 352
PleI	GAGTC	2 cut(s)	48, 277
PpsI	GAGTC	2 cut(s)	48, 277
PshBI	ATTAAT	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SaqAI	TTAA	4 cut(s)	56, 71, 143, 501
SatI	GCNGC	2 cut(s)	264, 351
Sau3AI	GATC	1 cut(s)	89
SchI	GAGTC	2 cut(s)	49, 278
ScrFI	CCNGG	1 cut(s)	303
SetI	ASST	2 cut(s)	32, 387
SfaNI	GCATC	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	225
SpeI	ACTAGT	1 cut(s)	469
Sse9I	AATT	5 cut(s)	164, 228, 240, 449, 493
SsiI	CCGC	2 cut(s)	313, 350
SspMI	CTAG	4 cut(s)	93, 354, 470, 477
StyD4I	CCNGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	380
TaqI	TCGA	4 cut(s)	114, 162, 225, 511
TasI	AATT	5 cut(s)	164, 228, 240, 449, 493
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	4 cut(s)	176, 212, 368, 428
Tru1I	TTAA	4 cut(s)	56, 71, 143, 501
Tru9I	TTAA	4 cut(s)	56, 71, 143, 501
TscAI	CASTG	2 cut(s)	154, 414
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	154, 414
VspI	ATTAAT	1 cut(s)	143
XapI	RAATTY	4 cut(s)	164, 228, 449, 493
XspI	CTAG	4 cut(s)	93, 354, 470, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.