Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0018964

Physical Location & Seq

Genomic Coordinates Forward (+)

9810829 .. 9811678

Gene Structure 850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00169110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAGCACAGAAGCCTTGCAATTTGACTTTGACTCCATTAGAGTTGCTACAAATAACTTTTCTGAAGCAAATACACTTGGGCGAGGCGGATTTGGTGCGGTATACAAGGCGGCTGCCTCAGTTGGCAACCCTCGGGGCCGGCTCGAGGGTAGGCTTTGGAACGAAGAAGATATAGCAGTAAAAAGACTTTCTAAAGATTCTACCCAAGGAGACATAGAATTTAAAAATGAGGTGATATTAGTGGCCAAGCTTCAACACCGGAACTTGGTTAGGCTCCTTGGTTTCTGTCAGGAAAGAAATGAAAGACTTCTTGTCCATGAGTTTGTCCCAACGCAAGTCTCGATCATTTCATATTTGGTATGCATGGTTGAATGCTTTGATGGATCGATCTGTATAGAAAATGTCATGCCTAGGAGTAGTATAACCAACGTCATTACTGCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0097305 GO:0098542 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

148

Amino Acids

16.53

Weight (kDa)

5.92

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 112	7e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	24 - 111	6.4e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018964)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0114801 RchiOBHm_Chr2g0114851
rosa_laevigata	RLG00000018123
rosa_roxburghii	Rroxscaffold_2G00130340 Rroxscaffold_7G00169110 Rroxscaffold_7G00185000
rosa_rugosa	Rorug06G0159800
rosa_samantha	Rh3AG322600 Rh4AG260500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	3 cut(s)	87, 98, 110
AclWI	GGATC	1 cut(s)	391
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	145, 265
AgsI	TTSAA	2 cut(s)	254, 371
AhdI	GACNNNNNGTC	1 cut(s)	311
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	204, 343
AlwI	GGATC	1 cut(s)	391
Ama87I	CYCGRG	2 cut(s)	132, 143
AoxI	GGCC	2 cut(s)	136, 243
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	306
AspA2I	CCTAGG	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	244
AvaI	CYCGRG	2 cut(s)	132, 143
AvrII	CCTAGG	1 cut(s)	410
BalI	TGGCCA	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	204, 343
BfaI	CTAG	1 cut(s)	411
BisI	GCNGC	2 cut(s)	111, 114
BlnI	CCTAGG	1 cut(s)	410
BlsI	GCNGC	2 cut(s)	112, 115
BmeRI	GACNNNNNGTC	1 cut(s)	311
BmeT110I	CYCGRG	2 cut(s)	132, 143
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	2 cut(s)	137, 275
Bsa29I	ATCGAT	1 cut(s)	386
BsaJI	CCNNGG	4 cut(s)	131, 205, 277, 410
BsaWI	WCCGGW	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 265
Bse118I	RCCGGY	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	386
BseDI	CCNNGG	4 cut(s)	131, 205, 277, 410
BseLI	CCNNNNNNNGG	2 cut(s)	145, 265
BseMII	CTCAG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	100
BshFI	GGCC	2 cut(s)	138, 245
BshVI	ATCGAT	1 cut(s)	386
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	2 cut(s)	132, 143
BsiSI	CCGG	2 cut(s)	139, 259
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	2 cut(s)	145, 265
BsmAI	GTCTC	2 cut(s)	204, 343
BsmFI	GGGAC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	138, 245
BsoBI	CYCGRG	2 cut(s)	132, 143
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	342, 383, 387
BspACI	CCGC	3 cut(s)	87, 98, 110
BspANI	GGCC	2 cut(s)	138, 245
BspCNI	CTCAG	1 cut(s)	131
BspDI	ATCGAT	1 cut(s)	386
BspLI	GGNNCC	2 cut(s)	137, 275
BspPI	GGATC	1 cut(s)	391
BsrFI	RCCGGY	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	138
BssECI	CCNNGG	4 cut(s)	131, 205, 277, 410
BssMI	GATC	3 cut(s)	342, 383, 387
BssNAI	GTATAC	1 cut(s)	103
BssT1I	CCWWGG	3 cut(s)	205, 277, 410
Bst1107I	GTATAC	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	118
BstKTI	GATC	3 cut(s)	345, 386, 390
BstMAI	GTCTC	2 cut(s)	204, 343
BstMBI	GATC	3 cut(s)	342, 383, 387
BstV1I	GCAGC	1 cut(s)	100
BstZ17I	GTATAC	1 cut(s)	103
Bsu15I	ATCGAT	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	138, 245
BsuTUI	ATCGAT	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	386
CviAII	CATG	3 cut(s)	317, 364, 406
CviJI	RGCY	8 cut(s)	14, 113, 138, 142, 154, 245, 250, 274
CviKI_1	RGCY	8 cut(s)	14, 113, 138, 142, 154, 245, 250, 274
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	3 cut(s)	344, 385, 389
DpnII	GATC	3 cut(s)	342, 383, 387
DraI	TTTAAA	1 cut(s)	223
DriI	GACNNNNNGTC	1 cut(s)	311
EaeI	YGGCCR	1 cut(s)	243
Eam1105I	GACNNNNNGTC	1 cut(s)	311
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	3 cut(s)	205, 277, 410
Eco57I	CTGAAG	1 cut(s)	84
Eco88I	CYCGRG	2 cut(s)	132, 143
EcoT14I	CCWWGG	3 cut(s)	205, 277, 410
EcoT22I	ATGCAT	1 cut(s)	365
ErhI	CCWWGG	3 cut(s)	205, 277, 410
FaeI	CATG	3 cut(s)	320, 367, 409
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	3 cut(s)	316, 363, 405
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	111, 114
Fsp4HI	GCNGC	2 cut(s)	111, 114
FspBI	CTAG	1 cut(s)	411
GluI	GCNGC	2 cut(s)	111, 114
HaeIII	GGCC	2 cut(s)	138, 245
HapII	CCGG	2 cut(s)	139, 259
Hin1II	CATG	3 cut(s)	320, 367, 409
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	2 cut(s)	32, 197
HpaII	CCGG	2 cut(s)	139, 259
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	290, 340
Hpy8I	GTNNAC	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	429
HpyCH4V	TGCA	2 cut(s)	19, 363
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	320, 367, 409
KroI	GCCGGC	1 cut(s)	138
KroNI	GCCGGC	1 cut(s)	140
Kzo9I	GATC	3 cut(s)	342, 383, 387
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	3 cut(s)	152, 272, 275
Lsp1109I	GCAGC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	429
MalI	GATC	3 cut(s)	344, 385, 389
MboI	GATC	3 cut(s)	342, 383, 387
MboII	GAAGA	2 cut(s)	176, 179
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	2 cut(s)	20, 218
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	5 cut(s)	77, 127, 139, 141, 223
Mox20I	TGGCCA	1 cut(s)	245
Mph1103I	ATGCAT	1 cut(s)	365
MroNI	GCCGGC	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	1 cut(s)	222
Msp20I	TGGCCA	1 cut(s)	245
MspI	CCGG	2 cut(s)	139, 259
Mva1269I	GAATGC	1 cut(s)	377
NaeI	GCCGGC	1 cut(s)	140
NdeII	GATC	3 cut(s)	342, 383, 387
NgoMIV	GCCGGC	1 cut(s)	138
NlaIII	CATG	3 cut(s)	320, 367, 409
NlaIV	GGNNCC	2 cut(s)	137, 275
NsiI	ATGCAT	1 cut(s)	365
PaeR7I	CTCGAG	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PctI	GAATGC	1 cut(s)	377
PdiI	GCCGGC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	112, 115
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	137, 275
PspPI	GGNCC	1 cut(s)	136
PspXI	VCTCGAGB	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	2 cut(s)	111, 114
Sau3AI	GATC	3 cut(s)	342, 383, 387
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	3 cut(s)	234, 252, 432
Sfr274I	CTCGAG	1 cut(s)	143
SlaI	CTCGAG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	20, 218
SsiI	CCGC	3 cut(s)	87, 98, 110
SspMI	CTAG	1 cut(s)	411
StyI	CCWWGG	3 cut(s)	205, 277, 410
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	3 cut(s)	144, 341, 386
TasI	AATT	2 cut(s)	20, 218
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	315, 339
XapI	RAATTY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	143
XmaJI	CCTAGG	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	1 cut(s)	411
Zsp2I	ATGCAT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.