Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018964

Physical Location & Seq

Genomic Coordinates Reverse (-)

66487884 .. 66489758

Gene Structure 1875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00130340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGACGCCCGCGACCGGGCACCAAGGATGACAAAGCCAGAGGACAATGTCATATCCGATAGACCTTCTCCGACGGAGTGGTTGAAATCCAACGAATGTTTTGGTGACGAGCAAGAAAATTCCTTCGCTGACTTTATATATATAATGCACAAATTAATGCAGGCATGGAAAAGCTGGAGGGAAGGGACACCTTCAAATGTGATAGATCCCACATTGAAGAATGGTTCAAGAACTGAAATAATGAGATGCGTACACATTGGACTGTTATGTGTGCAAGAAAATCTAGCTGATAAACCAACCATGGCTTCAGTTATCCTCATGTTGAATAGCTACTCTCTCAGTCTCCCAGTACCCTTAAAACCAGCATTTTTAATGTATAGTAGCGTCGGATCTAGGAGAAACTTTGTCTCTCTCGAAGTAACCGAAAATGATGATGCTTCATTAATCACTGAAGTAAATCCTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

155

Amino Acids

17.6

Weight (kDa)

5.21

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018964)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0114801 RchiOBHm_Chr2g0114851
rosa_laevigata	RLG00000018123
rosa_roxburghii	Rroxscaffold_2G00130340 Rroxscaffold_7G00169110 Rroxscaffold_7G00185000
rosa_rugosa	Rorug06G0159800
rosa_samantha	Rh3AG322600 Rh4AG260500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	19
AccII	CGCG	1 cut(s)	12
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	2 cut(s)	200, 397
AcsI	RAATTY	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	291
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	2 cut(s)	252, 351
AfiI	CCNNNNNNNGG	2 cut(s)	15, 16
AgsI	TTSAA	5 cut(s)	85, 195, 217, 228, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
AluBI	AGCT	3 cut(s)	174, 287, 330
AluI	AGCT	3 cut(s)	174, 287, 330
Alw26I	GTCTC	2 cut(s)	347, 412
AlwI	GGATC	2 cut(s)	200, 397
ApoI	RAATTY	1 cut(s)	118
AseI	ATTAAT	2 cut(s)	155, 443
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	116
BaeGI	GKGCMC	1 cut(s)	22
BanI	GGYRCC	1 cut(s)	19
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	2 cut(s)	347, 412
BfaI	CTAG	3 cut(s)	284, 393, 466
Bme1390I	CCNGG	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	17
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	2 cut(s)	236, 424
BmuI	ACTGGG	1 cut(s)	341
BpmI	CTGGAG	1 cut(s)	196
BpuMI	CCSGG	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	23, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 16
Bse1I	ACTGG	1 cut(s)	347
BseDI	CCNNGG	2 cut(s)	23, 300
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	15, 16
BseMII	CTCAG	1 cut(s)	352
BseNI	ACTGG	1 cut(s)	347
BseSI	GKGCMC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	16
BshNI	GGYRCC	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	2 cut(s)	15, 16
BsmAI	GTCTC	2 cut(s)	347, 412
BsmFI	GGGAC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	205, 389
Bsp19I	CCATGG	1 cut(s)	300
BspACI	CCGC	1 cut(s)	10
BspCNI	CTCAG	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	2 cut(s)	200, 397
BspT107I	GGYRCC	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	23, 300
BssMI	GATC	2 cut(s)	205, 389
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	23, 300
Bst4CI	ACNGT	1 cut(s)	264
BstACI	GRCGYC	1 cut(s)	6
BstC8I	GCNNGC	2 cut(s)	10, 162
BstDEI	CTNAG	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	2 cut(s)	208, 392
BstMAI	GTCTC	2 cut(s)	347, 412
BstMBI	GATC	2 cut(s)	205, 389
BstMCI	CGRYCG	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	22
BstUI	CGCG	1 cut(s)	12
BstX2I	RGATCY	2 cut(s)	205, 389
BstYI	RGATCY	2 cut(s)	205, 389
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	2 cut(s)	10, 162
CseI	GACGC	2 cut(s)	14, 373
Csp6I	GTAC	2 cut(s)	251, 350
CviAII	CATG	3 cut(s)	165, 301, 319
CviJI	RGCY	5 cut(s)	37, 174, 287, 305, 330
CviKI_1	RGCY	5 cut(s)	37, 174, 287, 305, 330
CviQI	GTAC	2 cut(s)	251, 350
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	2 cut(s)	207, 391
DpnII	GATC	2 cut(s)	205, 389
Eco130I	CCWWGG	2 cut(s)	23, 300
Eco57I	CTGAAG	1 cut(s)	291
EcoT14I	CCWWGG	2 cut(s)	23, 300
ErhI	CCWWGG	2 cut(s)	23, 300
FaeI	CATG	3 cut(s)	168, 304, 322
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	3 cut(s)	164, 300, 318
FauI	CCCGC	1 cut(s)	17
FokI	GGATG	1 cut(s)	40
FspBI	CTAG	3 cut(s)	284, 393, 466
GsuI	CTGGAG	1 cut(s)	196
HapII	CCGG	1 cut(s)	16
HgaI	GACGC	2 cut(s)	14, 373
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	168, 304, 322
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	58, 72, 389
Hpy188III	TCNNGA	2 cut(s)	228, 413
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	2 cut(s)	76, 389
HpyAV	CCTTC	4 cut(s)	75, 133, 176, 201
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	148, 160, 274
HpyF3I	CTNAG	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	3 cut(s)	168, 304, 322
Kzo9I	GATC	2 cut(s)	205, 389
LpnPI	CCDG	6 cut(s)	29, 51, 146, 160, 360, 375
LweI	GCATC	2 cut(s)	236, 424
MaeI	CTAG	3 cut(s)	284, 393, 466
MaeIII	GTNAC	2 cut(s)	104, 418
MalI	GATC	2 cut(s)	207, 391
MboI	GATC	2 cut(s)	205, 389
MboII	GAAGA	1 cut(s)	229
MflI	RGATCY	2 cut(s)	205, 389
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	2 cut(s)	118, 152
MmeI	TCCRAC	3 cut(s)	95, 114, 367
MnlI	CCTC	3 cut(s)	34, 171, 326
MseI	TTAA	4 cut(s)	155, 356, 371, 443
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	12
NciI	CCSGG	1 cut(s)	17
NcoI	CCATGG	1 cut(s)	300
NdeII	GATC	2 cut(s)	205, 389
NlaIII	CATG	3 cut(s)	168, 304, 322
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PflFI	GACNNNGTC	1 cut(s)	47
PshBI	ATTAAT	2 cut(s)	155, 443
PspN4I	GGNNCC	1 cut(s)	21
PsuI	RGATCY	2 cut(s)	205, 389
PsyI	GACNNNGTC	1 cut(s)	47
RsaI	GTAC	2 cut(s)	252, 351
RsaNI	GTAC	2 cut(s)	251, 350
SaqAI	TTAA	4 cut(s)	155, 356, 371, 443
Sau3AI	GATC	2 cut(s)	205, 389
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	5 cut(s)	67, 176, 193, 289, 332
SfaNI	GCATC	2 cut(s)	236, 424
Sse9I	AATT	2 cut(s)	118, 152
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	3 cut(s)	284, 393, 466
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	2 cut(s)	23, 300
TaaI	ACNGT	1 cut(s)	264
TaqI	TCGA	1 cut(s)	414
TasI	AATT	2 cut(s)	118, 152
Tru1I	TTAA	4 cut(s)	155, 356, 371, 443
Tru9I	TTAA	4 cut(s)	155, 356, 371, 443
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	429
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	454
Tth111I	GACNNNGTC	1 cut(s)	47
VspI	ATTAAT	2 cut(s)	155, 443
XapI	RAATTY	1 cut(s)	118
XspI	CTAG	3 cut(s)	284, 393, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.