Rh3AG322600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0018964
Physical Location & Seq
Forward (+)
45144825 .. 45145616
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG322600.1

Sequence Viewer

Length: 375 bp
ATGTGCGTGGAGTCCTTCACTCCTCCAACAGACAATCTTCTCCCTGGAGAAATCAGCCACCAGAGACTCCGGCGAATCGACGAAGGGGTGGCGGCCAGCAATTGGGCTGATTCCGGCGACGCGCAGCACAGGAGAGTAGAAATCGAAGCGGTTGACGTAGACGAACTGGCCGAGCTGGAGGCGGTTGGCGAGGATGAGATTGGTGTCTTTCTCGGAGAGGGAGACGTAGGTGGAGTTGAGGGAGTCGGAGAGCTGGACGTAGAAGCCTTAGTTGGGCCAGAGGTCGTCGGAGTCGGCGAGGGCGGGGACTATGCCGATAACTTAGAGCAGGGCAGAGCGATGGTCGTCGGTGACTTAGAGAGAGACAGTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.03

Weight (kDa)

4.05

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018964)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0114801 RchiOBHm_Chr2g0114851
rosa_laevigata RLG00000018123
rosa_roxburghii Rroxscaffold_2G00130340 Rroxscaffold_7G00169110 Rroxscaffold_7G00185000
rosa_rugosa Rorug06G0159800
rosa_samantha Rh3AG322600 Rh4AG260500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 102
AccI GTMKAC 1 cut(s) 159
AccII CGCG 1 cut(s) 122
AciI CCGC 4 cut(s) 92, 149, 182, 303
AcoI YGGCCR 2 cut(s) 93, 168
AfiI CCNNNNNNNGG 2 cut(s) 102, 273
AjnI CCWGG 1 cut(s) 43
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AluBI AGCT 2 cut(s) 175, 253
AluI AGCT 2 cut(s) 175, 253
Alw26I GTCTC 3 cut(s) 58, 216, 357
AoxI GGCC 3 cut(s) 93, 168, 275
ApeKI GCWGC 1 cut(s) 124
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 362
BbvI GCAGC 1 cut(s) 136
BccI CCATC 1 cut(s) 334
BciT130I CCWGG 1 cut(s) 45
BcoDI GTCTC 3 cut(s) 58, 216, 357
BisI GCNGC 2 cut(s) 93, 125
BlsI GCNGC 2 cut(s) 94, 126
Bme1390I CCNGG 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 45
BpmI CTGGAG 2 cut(s) 66, 197
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 273
Bse1I ACTGG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 2 cut(s) 102, 273
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 12
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 3 cut(s) 95, 170, 277
BsiSI CCGG 2 cut(s) 70, 114
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 2 cut(s) 102, 273
BsmAI GTCTC 3 cut(s) 58, 216, 357
BsmBI CGTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 3 cut(s) 95, 170, 277
BspACI CCGC 4 cut(s) 92, 149, 182, 303
BspANI GGCC 3 cut(s) 95, 170, 277
BspFNI CGCG 1 cut(s) 122
BsrI ACTGG 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 3 cut(s) 268, 322, 355
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 122
BstHHI GCGC 1 cut(s) 124
BstMAI GTCTC 3 cut(s) 58, 216, 357
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 136
BsuRI GGCC 3 cut(s) 95, 170, 277
BtgZI GCGATG 1 cut(s) 353
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 373
Cac8I GCNNGC 1 cut(s) 97
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 275
CseI GACGC 1 cut(s) 128
CviJI RGCY 8 cut(s) 57, 95, 107, 170, 175, 253, 266, 277
CviKI_1 RGCY 8 cut(s) 57, 95, 107, 170, 175, 253, 266, 277
DdeI CTNAG 3 cut(s) 268, 322, 355
EaeI YGGCCR 2 cut(s) 93, 168
EcoRII CCWGG 1 cut(s) 43
Esp3I CGTCTC 1 cut(s) 216
FaiI YATR 1 cut(s) 312
FaqI GGGAC 1 cut(s) 320
FauI CCCGC 1 cut(s) 296
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 2 cut(s) 93, 125
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 93, 125
GlaI GCGC 1 cut(s) 123
GluI GCNGC 2 cut(s) 93, 125
GsuI CTGGAG 2 cut(s) 66, 197
HaeIII GGCC 3 cut(s) 95, 170, 277
HapII CCGG 2 cut(s) 70, 114
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 124
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 6 cut(s) 11, 66, 75, 110, 243, 291
HpaII CCGG 2 cut(s) 70, 114
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 2 cut(s) 154, 160
Hpy188I TCNGA 3 cut(s) 215, 248, 290
Hpy8I GTNNAC 2 cut(s) 154, 160
Hpy99I CGWCG 4 cut(s) 83, 122, 290, 350
HpyAV CCTTC 2 cut(s) 25, 77
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 3 cut(s) 156, 225, 258
HpyF3I CTNAG 3 cut(s) 268, 322, 355
HpySE526I ACGT 3 cut(s) 156, 225, 258
HspAI GCGC 1 cut(s) 122
Lsp1109I GCAGC 1 cut(s) 136
MaeII ACGT 3 cut(s) 156, 225, 258
MaeIII GTNAC 1 cut(s) 350
MboII GAAGA 1 cut(s) 29
MfeI CAATTG 1 cut(s) 100
MluCI AATT 1 cut(s) 100
MlyI GAGTC 4 cut(s) 20, 60, 252, 300
MmeI TCCRAC 3 cut(s) 50, 226, 268
MnlI CCTC 7 cut(s) 33, 172, 184, 211, 232, 274, 292
MspI CCGG 2 cut(s) 70, 114
MspR9I CCNGG 1 cut(s) 45
MunI CAATTG 1 cut(s) 100
MvaI CCWGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 122
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 350
PcsI WCGNNNNNNNCGW 2 cut(s) 168, 294
PfeI GAWTC 2 cut(s) 75, 110
PflMI CCANNNNNTGG 1 cut(s) 102
PkrI GCNGC 2 cut(s) 94, 126
PleI GAGTC 4 cut(s) 19, 60, 251, 299
PpsI GAGTC 4 cut(s) 19, 60, 251, 299
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspPI GGNCC 1 cut(s) 275
SatI GCNGC 2 cut(s) 93, 125
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 4 cut(s) 20, 60, 252, 300
ScrFI CCNGG 1 cut(s) 45
SetI ASST 7 cut(s) 159, 177, 228, 232, 255, 261, 285
Sse9I AATT 1 cut(s) 100
SsiI CCGC 4 cut(s) 92, 149, 182, 303
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 3 cut(s) 159, 228, 261
TaqI TCGA 2 cut(s) 78, 144
TasI AATT 1 cut(s) 100
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 2 cut(s) 75, 110
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 350
TspRI CASTG 1 cut(s) 373
Van91I CCANNNNNTGG 1 cut(s) 102
XmiI GTMKAC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.