Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0019924

Physical Location & Seq

Genomic Coordinates Forward (+)

28718072 .. 28722929

Gene Structure 4858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018359

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATGAGAAGGAGAGGAGAGGAGAGGGGAAGACTGCTGCATAACATAGAGTTGTTGATTTCACAAACCTTATATTTTCCAAACATTGTAAATGTTCCTCTCTTCAAGGGGTGCTCAATGGAATTCATCAATCAGATTACCCTGAAGACCAGGTCTGCCTATCCGGAGTCCAGAAGCGCATACATTATGTCTTTCACAATCTCAGACTCACCGATCTCAATCAATCTCCATCAAGACTTGGTCGAAAAGAGGAAATCTATCGTTCTCACTCAAAAACAAAGTGACAGCCCCTCAGAGCAAATCACAAATGAGCTACTTATAACATTTCTTGGAATTCATGATGAAAAATCCCGCAGCATAGCGCGGGCTTATACGCTATCACCAAGTTGTGCATTTTTCCAGAATAACTCGCAGCATATTATTTTTGGAATGTATTTCATGTATTACCGGTATGACTCAGAGGAACTACAAGCCAAAGAGGAAGTTCATGGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015271 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0033993 GO:0034220 GO:0042221 GO:0042391 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

166

Amino Acids

19.17

Weight (kDa)

6.97

Isoelectric Point (pI)

80.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019924)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427181 RchiOBHm_Chr5g0051591
rosa_laevigata	RLG00000018359
rosa_roxburghii	Rroxscaffold_2G00121050
rosa_samantha	Rh4AG137900 Rh6BG508100 Rh7AG407600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
AccII	CGCG	1 cut(s)	364
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	2 cut(s)	352, 364
AcsI	RAATTY	2 cut(s)	122, 333
AcuI	CTGAAG	1 cut(s)	164
AgeI	ACCGGT	1 cut(s)	447
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	1 cut(s)	313
AluI	AGCT	1 cut(s)	313
Alw21I	GWGCWC	1 cut(s)	116
Aor13HI	TCCGGA	1 cut(s)	163
ApeKI	GCWGC	3 cut(s)	37, 354, 412
ApoI	RAATTY	2 cut(s)	122, 333
AsiGI	ACCGGT	1 cut(s)	447
AspLEI	GCGC	2 cut(s)	179, 364
AsuHPI	GGTGA	2 cut(s)	201, 372
BbsI	GAAGAC	2 cut(s)	37, 152
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	3 cut(s)	24, 366, 424
BccI	CCATC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	151
BisI	GCNGC	3 cut(s)	38, 355, 413
BlsI	GCNGC	3 cut(s)	39, 356, 414
Bme1390I	CCNGG	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	1 cut(s)	151
BpiI	GAAGAC	2 cut(s)	37, 152
BsaBI	GATNNNNATC	1 cut(s)	218
BsaWI	WCCGGW	2 cut(s)	163, 447
Bse118I	RCCGGY	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	218
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	218
BseMII	CTCAG	3 cut(s)	216, 306, 471
BseRI	GAGGAG	2 cut(s)	30, 35
BseXI	GCAGC	3 cut(s)	24, 366, 424
Bsh1236I	CGCG	1 cut(s)	364
BshTI	ACCGGT	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	164, 448
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	2 cut(s)	352, 364
BspCNI	CTCAG	3 cut(s)	215, 305, 470
BspEI	TCCGGA	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	364
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	493
BsrFI	RCCGGY	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	447
BssMI	GATC	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	3 cut(s)	202, 292, 457
BstFNI	CGCG	1 cut(s)	364
BstHHI	GCGC	2 cut(s)	179, 364
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstUI	CGCG	1 cut(s)	364
BstV1I	GCAGC	3 cut(s)	24, 366, 424
BstV2I	GAAGAC	2 cut(s)	37, 152
Cac8I	GCNNGC	1 cut(s)	366
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	2 cut(s)	179, 364
Cfr10I	RCCGGY	1 cut(s)	447
CsiI	ACCWGGT	1 cut(s)	149
CspAI	ACCGGT	1 cut(s)	447
CviAII	CATG	3 cut(s)	338, 439, 488
CviJI	RGCY	4 cut(s)	288, 313, 368, 473
CviKI_1	RGCY	4 cut(s)	288, 313, 368, 473
DdeI	CTNAG	3 cut(s)	202, 292, 457
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	164
EcoRI	GAATTC	2 cut(s)	122, 333
EcoRII	CCWGG	1 cut(s)	149
FaeI	CATG	3 cut(s)	341, 442, 491
FatI	CATG	3 cut(s)	337, 438, 487
FauI	CCCGC	2 cut(s)	357, 359
Fnu4HI	GCNGC	3 cut(s)	38, 355, 413
Fsp4HI	GCNGC	3 cut(s)	38, 355, 413
GlaI	GCGC	2 cut(s)	178, 363
GluI	GCNGC	3 cut(s)	38, 355, 413
HapII	CCGG	2 cut(s)	164, 448
HhaI	GCGC	2 cut(s)	179, 364
Hin1II	CATG	3 cut(s)	341, 442, 491
Hin6I	GCGC	2 cut(s)	177, 362
HinP1I	GCGC	2 cut(s)	177, 362
HinfI	GANTC	3 cut(s)	167, 206, 455
HpaII	CCGG	2 cut(s)	164, 448
HphI	GGTGA	2 cut(s)	201, 372
Hpy188I	TCNGA	4 cut(s)	135, 205, 295, 460
Hpy188III	TCNNGA	6 cut(s)	164, 171, 233, 338, 400, 495
HpyAV	CCTTC	1 cut(s)	3
HpyCH4V	TGCA	2 cut(s)	40, 392
HpyF3I	CTNAG	3 cut(s)	202, 292, 457
Hsp92II	CATG	3 cut(s)	341, 442, 491
HspAI	GCGC	2 cut(s)	177, 362
Kpn2I	TCCGGA	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	213
LpnPI	CCDG	7 cut(s)	136, 155, 163, 177, 184, 413, 461
Lsp1109I	GCAGC	3 cut(s)	24, 366, 424
MabI	ACCWGGT	1 cut(s)	149
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	3 cut(s)	42, 94, 157
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	2 cut(s)	122, 333
MlyI	GAGTC	3 cut(s)	176, 200, 449
MnlI	CCTC	8 cut(s)	8, 13, 18, 108, 243, 301, 454, 472
MroI	TCCGGA	1 cut(s)	163
MspI	CCGG	2 cut(s)	164, 448
MspR9I	CCNGG	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	364
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	3 cut(s)	341, 442, 491
NlaIV	GGNNCC	1 cut(s)	493
NmuCI	GTSAC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	337
PflFI	GACNNNGTC	2 cut(s)	151, 239
PinAI	ACCGGT	1 cut(s)	447
PkrI	GCNGC	3 cut(s)	39, 356, 414
PleI	GAGTC	3 cut(s)	175, 200, 449
PpsI	GAGTC	3 cut(s)	175, 200, 449
PsiI	TTATAA	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	493
PsyI	GACNNNGTC	2 cut(s)	151, 239
SatI	GCNGC	3 cut(s)	38, 355, 413
Sau3AI	GATC	1 cut(s)	213
SchI	GAGTC	3 cut(s)	176, 200, 449
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	3 cut(s)	71, 155, 315
SexAI	ACCWGGT	1 cut(s)	149
Sse9I	AATT	2 cut(s)	122, 333
SsiI	CCGC	2 cut(s)	352, 364
StyD4I	CCNGG	1 cut(s)	149
TaqI	TCGA	1 cut(s)	243
TasI	AATT	2 cut(s)	122, 333
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	3 cut(s)	37, 354, 412
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	5 cut(s)	115, 326, 357, 427, 476
Tth111I	GACNNNGTC	2 cut(s)	151, 239
XapI	RAATTY	2 cut(s)	122, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.