Rroxscaffold_2G00121050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019924
Physical Location & Seq
Reverse (-)
53500213 .. 53505551
5339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00121050.1

Sequence Viewer

Length: 408 bp
ATGCTCCATGAAAAACTCGAGACTAATGTCGGACCTGTTCGAATCCGGCTCGGCGCCGTTGTGGTCACCGAGTTCATCCTCGCCACCATGTTCGGAACAAGGCATCCAAAATTCCTTTTGCCCCAAAAGTGTACCCATATGAGAATCTTCGAGTGGAGCTCGGTGGAGAACCATAGAGGGGTTTGTACTTCGGCCGAGAGAATGCTGGCGGGCATATGCGTCTTTAGGTATGGGAAGATGCGTCCGTTTTTTACGACCCCGAAGACCAGATCTGCCTATCCGGAGTACAGAAGCGCATACATTATGTCTTTCACAATCTCGTACTCACCAATCTCAATCAATCTCCATCAAGACTTGAATCGAGTATCTGTTGAGCATCTTGGTAATTTATCTGTTGGTAAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.41

Weight (kDa)

9.81

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019924)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0427181 RchiOBHm_Chr5g0051591
rosa_laevigata RLG00000018359
rosa_roxburghii Rroxscaffold_2G00121050
rosa_samantha Rh4AG137900 Rh6BG508100 Rh7AG407600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 4 cut(s) 133, 187, 287, 323
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 1 cut(s) 358
AloI GAACNNNNNNTCC 2 cut(s) 88, 120
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 14
Ama87I CYCGRG 1 cut(s) 17
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 110
AspLEI GCGC 2 cut(s) 56, 296
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 2 cut(s) 58, 318
AsuII TTCGAA 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 17
AvaII GGWCC 1 cut(s) 32
BanI GGYRCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 161
BccI CCATC 1 cut(s) 354
BceAI ACGGC 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 57
BglII AGATCT 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 55
BmsI GCATC 3 cut(s) 112, 228, 385
BoxI GACNNNNGTC 1 cut(s) 26
BpiI GAAGAC 1 cut(s) 269
BplI GAGNNNNNCTC 2 cut(s) 143, 175
Bpu14I TTCGAA 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 1 cut(s) 178
BseAI TCCGGA 1 cut(s) 280
BseGI GGATG 2 cut(s) 75, 103
BseLI CCNNNNNNNGG 1 cut(s) 178
BseX3I CGGCCG 1 cut(s) 192
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 53
BsiEI CGRYCG 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 161
BsiHKCI CYCGRG 1 cut(s) 17
BsiSI CCGG 2 cut(s) 46, 281
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 14
BsmI GAATGC 1 cut(s) 207
BsnI GGCC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 17
Bsp119I TTCGAA 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 161
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 1 cut(s) 269
BspACI CCGC 1 cut(s) 209
BspANI GGCC 1 cut(s) 194
BspEI TCCGGA 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 55
BspT104I TTCGAA 1 cut(s) 40
BspT107I GGYRCC 1 cut(s) 53
BssMI GATC 1 cut(s) 269
BssNI GRCGYC 1 cut(s) 54
BstACI GRCGYC 1 cut(s) 54
BstBI TTCGAA 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 207, 211
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 2 cut(s) 75, 103
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 2 cut(s) 56, 296
BstKTI GATC 1 cut(s) 272
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 1 cut(s) 269
BstMCI CGRYCG 1 cut(s) 195
BstPAI GACNNNNGTC 1 cut(s) 26
BstPI GGTNACC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BstZI CGGCCG 1 cut(s) 192
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 2 cut(s) 75, 103
Cac8I GCNNGC 2 cut(s) 207, 211
CfoI GCGC 2 cut(s) 56, 296
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 2 cut(s) 208, 230
Csp6I GTAC 4 cut(s) 132, 186, 286, 322
CviAII CATG 2 cut(s) 8, 88
CviJI RGCY 3 cut(s) 49, 159, 194
CviKI_1 RGCY 3 cut(s) 49, 159, 194
CviQI GTAC 4 cut(s) 132, 186, 286, 322
DinI GGCGCC 1 cut(s) 55
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
EaeI YGGCCR 1 cut(s) 192
EagI CGGCCG 1 cut(s) 192
Ecl136II GAGCTC 1 cut(s) 159
EclXI CGGCCG 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 32
Eco52I CGGCCG 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 17
Eco91I GGTNACC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 159
EcoO65I GGTNACC 1 cut(s) 64
EcoT38I GRGCYC 1 cut(s) 161
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
FaeI CATG 2 cut(s) 11, 91
FatI CATG 2 cut(s) 7, 87
FauI CCCGC 1 cut(s) 202
FauNDI CATATG 2 cut(s) 138, 215
FokI GGATG 2 cut(s) 62, 90
FriOI GRGCYC 1 cut(s) 161
GlaI GCGC 2 cut(s) 55, 295
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 1 cut(s) 194
HapII CCGG 2 cut(s) 46, 281
HgaI GACGC 2 cut(s) 208, 230
HhaI GCGC 2 cut(s) 56, 296
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 2 cut(s) 11, 91
Hin6I GCGC 2 cut(s) 54, 294
HinP1I GCGC 2 cut(s) 54, 294
HinfI GANTC 3 cut(s) 42, 144, 358
HpaII CCGG 2 cut(s) 46, 281
HphI GGTGA 2 cut(s) 58, 318
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 2 cut(s) 32, 95
Hpy188III TCNNGA 3 cut(s) 19, 281, 350
Hpy8I GTNNAC 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 2 cut(s) 11, 91
HspAI GCGC 2 cut(s) 54, 294
KasI GGCGCC 1 cut(s) 53
Kpn2I TCCGGA 1 cut(s) 280
Kzo9I GATC 1 cut(s) 269
LmnI GCTCC 2 cut(s) 9, 156
LpnPI CCDG 5 cut(s) 48, 59, 191, 280, 294
LweI GCATC 3 cut(s) 112, 228, 385
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MboII GAAGA 3 cut(s) 139, 247, 274
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 2 cut(s) 110, 385
Mly113I GGCGCC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 10
MnlI CCTC 2 cut(s) 89, 170
MroI TCCGGA 1 cut(s) 280
MspI CCGG 2 cut(s) 46, 281
Mva1269I GAATGC 1 cut(s) 207
NarI GGCGCC 1 cut(s) 54
NdeI CATATG 2 cut(s) 138, 215
NdeII GATC 1 cut(s) 269
NlaIII CATG 2 cut(s) 11, 91
NlaIV GGNNCC 1 cut(s) 55
NmeAIII GCCGAG 2 cut(s) 30, 220
NmuCI GTSAC 1 cut(s) 64
NspV TTCGAA 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 17
PctI GAATGC 1 cut(s) 207
PfeI GAWTC 3 cut(s) 42, 144, 358
PluTI GGCGCC 1 cut(s) 57
PshAI GACNNNNGTC 1 cut(s) 26
Psp124BI GAGCTC 1 cut(s) 161
PspEI GGTNACC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 32
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 4 cut(s) 133, 187, 287, 323
RsaNI GTAC 4 cut(s) 132, 186, 286, 322
SacI GAGCTC 1 cut(s) 161
Sau3AI GATC 1 cut(s) 269
Sau96I GGNCC 1 cut(s) 32
SduI GDGCHC 1 cut(s) 161
SetI ASST 4 cut(s) 37, 161, 230, 406
SfaNI GCATC 3 cut(s) 112, 228, 385
SfoI GGCGCC 1 cut(s) 55
Sfr274I CTCGAG 1 cut(s) 17
SfuI TTCGAA 1 cut(s) 40
SinI GGWCC 1 cut(s) 32
SlaI CTCGAG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 2 cut(s) 110, 385
SsiI CCGC 1 cut(s) 209
SspDI GGCGCC 1 cut(s) 53
SstI GAGCTC 1 cut(s) 161
TaqI TCGA 4 cut(s) 18, 40, 150, 361
TasI AATT 2 cut(s) 110, 385
TatI WGTACW 2 cut(s) 185, 285
TfiI GAWTC 3 cut(s) 42, 144, 358
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 24, 64
TspGWI ACGGA 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 1 cut(s) 110
XhoI CTCGAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.