Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0019924

Physical Location & Seq

Genomic Coordinates Forward (+)

54134686 .. 54179059

Gene Structure 44374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG407600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTGCACAGTATTCCCTTTCATTAGTAGTCTGGCGGCTGACCCTAGATTGTATCCTATTGATGTCAAGGATTGGTGGCACTTTGACAAGGACGACAACCACCAAAGGGCATGGACACGTATTGAGTATGTCATCTTGAGCCTCCTCAGAATCAGGCTGTACGTACAGGCAAAAGAAACAAGTGCATGTTCAAACACAACGATAGTCCAGGTGTTATGGAGAATGATGTGTCAAGCACAAGTAATGACCTTACCTGCACTTACCGGCGTCCTCTGTCTCAAACATAATTCCAAACCTCATGCCAACATCCCATATAAAGCCTTTTGGAATTTGACAAAAGGTATAACAATTCTGAAGGGCATGCCCTACATTTGCGTAGAAATAGGACTACAGTCAAGTAAAGATAAACCAAAAGAATATTGTAACTATAACAAGAATCCCCGCAACAACACTAAAAGCGCACTTAACACTGTCCTCATTATTAGCAAGGAAAGCCTACTTAATATCATCCTTGTTACTCAGAAAGGAATGCGTAGCAAAGGTAGTGCTGGTTTTTGGTTCCTCTTTGACCCACTTTCAGAACATGACAAGGCTTCCTTCTTTAACAATGACCTCCTAATTTTGGATGCCTTCGTGATTCATAAGATAAACCAGTCAACCCTTTTTGCTATGATCCCTGCACATCCAGCTTTGGAGAGGCGCAGTACAAATCAGAGTGCGGCACAAAACACTTCAGAACTTGATTTTCGGTTTCCAATTGGAGCCCCCATACATGGGATTCTTGCGTTTTTATCTACAAATCAGATCAAGACTTATGATAAAGCAAGAAATGCATTGGCTCTTGCATTGAGTCCTGTCGTCAAGGCTCTGGTTGATCCAGATGGAGCATTGAGTGATGTGCGGAATTTGGATAGCATAAGCTTCTCAGATTGGTTCATGTCCAAGGGTGGCACACGCACGAGTATCCAGAGAATATTTCACAAACCTTATATTTTCCAAACATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009507 GO:0009509 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016119 GO:0016120 GO:0016491 GO:0016627 GO:0016635 GO:0031967 GO:0031975 GO:0042214 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046246 GO:0052886 GO:0052889 GO:0055114 GO:0071704 GO:1901175 GO:1901177 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

335

Amino Acids

37.96

Weight (kDa)

9.42

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019924)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427181 RchiOBHm_Chr5g0051591
rosa_laevigata	RLG00000018359
rosa_roxburghii	Rroxscaffold_2G00121050
rosa_samantha	Rh4AG137900 Rh6BG508100 Rh7AG407600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AciI	CCGC	4 cut(s)	35, 442, 719, 901
AclWI	GGATC	2 cut(s)	667, 869
AcsI	RAATTY	2 cut(s)	328, 904
AcuI	CTGAAG	2 cut(s)	374, 717
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	3 cut(s)	161, 165, 706
AfiI	CCNNNNNNNGG	4 cut(s)	106, 622, 773, 774
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	192
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	2 cut(s)	689, 921
AluI	AGCT	2 cut(s)	689, 921
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	281
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	2 cut(s)	667, 869
ApaLI	GTGCAC	1 cut(s)	4
ApoI	RAATTY	2 cut(s)	328, 904
AspLEI	GCGC	2 cut(s)	461, 702
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	766
BauI	CACGAG	1 cut(s)	958
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	875
BciT130I	CCWGG	1 cut(s)	209
BciVI	GTATCC	2 cut(s)	63, 974
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	389
BfuAI	ACCTGC	1 cut(s)	262
BfuI	GTATCC	2 cut(s)	63, 974
BisI	GCNGC	2 cut(s)	36, 720
BlsI	GCNGC	2 cut(s)	37, 721
Bme1390I	CCNGG	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	560, 763
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	616
BoxI	GACNNNNGTC	1 cut(s)	391
BpuEI	CTTGAG	1 cut(s)	157
BsaAI	YACGTR	2 cut(s)	119, 163
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	942
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 622, 773, 774
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	652
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	942
BseGI	GGATG	4 cut(s)	306, 507, 631, 682
BseLI	CCNNNNNNNGG	4 cut(s)	106, 622, 773, 774
BseMII	CTCAG	3 cut(s)	160, 533, 939
BseNI	ACTGG	1 cut(s)	652
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	8
BsgI	GTGCAG	2 cut(s)	240, 663
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	4 cut(s)	106, 622, 773, 774
BsmAI	GTCTC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	534
Bsp1286I	GDGCHC	2 cut(s)	8, 766
Bsp143I	GATC	3 cut(s)	672, 804, 874
BspACI	CCGC	4 cut(s)	35, 442, 719, 901
BspCNI	CTCAG	3 cut(s)	159, 532, 938
BspLI	GGNNCC	2 cut(s)	560, 763
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	2 cut(s)	667, 869
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	652
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	942
BssMI	GATC	3 cut(s)	672, 804, 874
BssNI	GRCGYC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	958
BssT1I	CCWWGG	1 cut(s)	942
Bst2BI	CACGAG	1 cut(s)	958
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	3 cut(s)	10, 393, 472
BstACI	GRCGYC	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	830
BstBAI	YACGTR	2 cut(s)	119, 163
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	3 cut(s)	146, 519, 925
BstF5I	GGATG	4 cut(s)	306, 507, 631, 682
BstHHI	GCGC	2 cut(s)	461, 702
BstKTI	GATC	3 cut(s)	675, 807, 877
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	3 cut(s)	672, 804, 874
BstMWI	GCNNNNNNNGC	3 cut(s)	492, 686, 830
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	2 cut(s)	189, 364
BstPAI	GACNNNNGTC	1 cut(s)	391
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	389
BstSLI	GKGCMC	1 cut(s)	8
BstSNI	TACGTA	1 cut(s)	163
BsuI	GTATCC	2 cut(s)	63, 974
BtsCI	GGATG	4 cut(s)	306, 507, 631, 682
BtsIMutI	CAGTG	1 cut(s)	468
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	362
CfoI	GCGC	2 cut(s)	461, 702
Cfr10I	RCCGGY	1 cut(s)	263
CseI	GACGC	1 cut(s)	256
Csp6I	GTAC	3 cut(s)	160, 164, 705
CviAII	CATG	7 cut(s)	111, 186, 299, 361, 584, 773, 937
CviQI	GTAC	3 cut(s)	160, 164, 705
DdeI	CTNAG	3 cut(s)	146, 519, 925
DpnI	GATC	3 cut(s)	674, 806, 876
DpnII	GATC	3 cut(s)	672, 804, 874
Eco105I	TACGTA	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	942
Eco24I	GRGCYC	1 cut(s)	766
Eco57I	CTGAAG	2 cut(s)	374, 717
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	942
EcoT22I	ATGCAT	1 cut(s)	835
EcoT38I	GRGCYC	1 cut(s)	766
ErhI	CCWWGG	1 cut(s)	942
FaeI	CATG	7 cut(s)	114, 189, 302, 364, 587, 776, 940
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FatI	CATG	7 cut(s)	110, 185, 298, 360, 583, 772, 936
FauI	CCCGC	1 cut(s)	449
Fnu4HI	GCNGC	2 cut(s)	36, 720
FokI	GGATG	4 cut(s)	293, 494, 638, 669
FriOI	GRGCYC	1 cut(s)	766
Fsp4HI	GCNGC	2 cut(s)	36, 720
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	2 cut(s)	460, 701
GluI	GCNGC	2 cut(s)	36, 720
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	1 cut(s)	256
HhaI	GCGC	2 cut(s)	461, 702
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	7 cut(s)	114, 189, 302, 364, 587, 776, 940
Hin6I	GCGC	2 cut(s)	459, 700
HinP1I	GCGC	2 cut(s)	459, 700
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HindIII	AAGCTT	1 cut(s)	919
HinfI	GANTC	5 cut(s)	150, 436, 637, 778, 850
HpaII	CCGG	1 cut(s)	264
Hpy166II	GTNNAC	2 cut(s)	6, 657
Hpy188I	TCNGA	8 cut(s)	149, 354, 522, 580, 714, 736, 804, 928
Hpy188III	TCNNGA	5 cut(s)	136, 634, 808, 878, 967
Hpy8I	GTNNAC	2 cut(s)	6, 657
HpyAV	CCTTC	3 cut(s)	349, 607, 640
HpyCH4III	ACNGT	3 cut(s)	10, 393, 472
HpyCH4IV	ACGT	2 cut(s)	118, 162
HpyCH4V	TGCA	6 cut(s)	6, 185, 257, 680, 833, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	492, 686, 830
HpyF3I	CTNAG	3 cut(s)	146, 519, 925
HpySE526I	ACGT	2 cut(s)	118, 162
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	7 cut(s)	114, 189, 302, 364, 587, 776, 940
HspAI	GCGC	2 cut(s)	459, 700
Kzo9I	GATC	3 cut(s)	672, 804, 874
LmnI	GCTCC	2 cut(s)	761, 884
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	2 cut(s)	118, 162
MaeIII	GTNAC	2 cut(s)	422, 514
MalI	GATC	3 cut(s)	674, 806, 876
MboI	GATC	3 cut(s)	672, 804, 874
MfeI	CAATTG	1 cut(s)	756
MhlI	GDGCHC	2 cut(s)	8, 766
MluCI	AATT	6 cut(s)	286, 328, 348, 618, 756, 904
MlyI	GAGTC	1 cut(s)	859
MnlI	CCTC	8 cut(s)	152, 155, 281, 306, 485, 572, 623, 690
Mph1103I	ATGCAT	1 cut(s)	835
MseI	TTAA	3 cut(s)	465, 501, 603
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	209
MunI	CAATTG	1 cut(s)	756
Mva1269I	GAATGC	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	3 cut(s)	492, 686, 830
NdeII	GATC	3 cut(s)	672, 804, 874
NlaIII	CATG	7 cut(s)	114, 189, 302, 364, 587, 776, 940
NlaIV	GGNNCC	2 cut(s)	560, 763
NsiI	ATGCAT	1 cut(s)	835
NspI	RCATGY	2 cut(s)	189, 364
PaeI	GCATGC	1 cut(s)	364
PctI	GAATGC	1 cut(s)	534
PfeI	GAWTC	4 cut(s)	150, 436, 637, 778
PkrI	GCNGC	2 cut(s)	37, 721
PleI	GAGTC	1 cut(s)	858
PpsI	GAGTC	1 cut(s)	858
Ppu21I	YACGTR	2 cut(s)	119, 163
PshAI	GACNNNNGTC	1 cut(s)	391
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	560, 763
RsaI	GTAC	3 cut(s)	161, 165, 706
RsaNI	GTAC	3 cut(s)	160, 164, 705
SaqAI	TTAA	3 cut(s)	465, 501, 603
SatI	GCNGC	2 cut(s)	36, 720
Sau3AI	GATC	3 cut(s)	672, 804, 874
SchI	GAGTC	1 cut(s)	859
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	8, 766
SfaNI	GCATC	1 cut(s)	616
SfcI	CTRYAG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
SnaBI	TACGTA	1 cut(s)	163
SphI	GCATGC	1 cut(s)	364
Sse9I	AATT	6 cut(s)	286, 328, 348, 618, 756, 904
SsiI	CCGC	4 cut(s)	35, 442, 719, 901
SspI	AATATT	2 cut(s)	419, 975
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	942
TaaI	ACNGT	3 cut(s)	10, 393, 472
TaiI	ACGT	2 cut(s)	121, 165
TasI	AATT	6 cut(s)	286, 328, 348, 618, 756, 904
TatI	WGTACW	1 cut(s)	704
TauI	GCSGC	2 cut(s)	38, 722
TfiI	GAWTC	4 cut(s)	150, 436, 637, 778
Tru1I	TTAA	3 cut(s)	465, 501, 603
Tru9I	TTAA	3 cut(s)	465, 501, 603
TscAI	CASTG	1 cut(s)	475
TspDTI	ATGAA	3 cut(s)	10, 629, 925
TspRI	CASTG	1 cut(s)	475
VneI	GTGCAC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	328, 904
XceI	RCATGY	2 cut(s)	189, 364
XspI	CTAG	1 cut(s)	45
Zsp2I	ATGCAT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.