Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010333

Physical Location & Seq

Genomic Coordinates Forward (+)

29606982 .. 29612784

Gene Structure 5803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018424

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2199 bp

ATGGCGAATCTTGTCCCGGGTGTGCTGCTCAAGCTTTTACAGCACATGAACACAGATGTGAAAGTGGCTGGTGAGCACAGGTCGTCTCTGTTACAAGTTGTGAGCATTGTTCCAGCTCTGGCAGGGGGTGAGCTTTTCCCAAACCAAGGCTTCTATCTGAAGGTATCAGATTCCTCTCATGCCACTTATGTATCTCTGCCTGATGAACATGATGATTTAATTCTCAGTGATAAGATTCAATTGGGTCAGTTCATTCATGTGGACCGGCTTCAAGCCGCTACGCCAGTCCCCATACTTCATGGGGTTAGGCCTGTTCCGGGGAGACACCCTTGTGTAGGGAGCCCTGAGGACATTGTTGCAACACATTCTCTTGGATTTCTTAACAATAATGTGAATTCGGGTTCGAAAAATGGAGACAAAGTGAAATCTGAGTCTAAAGATTTAGGAACTAGTCATGGTGGAGCAAGACTAAATGGTAGTAGTGTCAAGGAGGAGAAATTAGATAAGAAAATCGGGTCTTTTAATAGATCAAAGTCTCAGCCATCTAAACCGTCATTGAATATGGAGGTGAAGAAGGAATCTTTGGCCAGATTGAAGTCCTTGAATTCAAGGTCTATTCCATCATCTCCAACAAGTTGTTATTCATTGCCAACTACTTTTGAGAAATTTTCAAATAGTGTCAAGAATCAGGGAAAAGTAAAGGCCACAGCTAAGGTGGGAGGTGTAGAAAAGACTAGTTCTGTTCGCAGGGTGAGTCCCAATGGGAGGAAATCAGTATCCGGAAACCCAATCAAGAATTTGGTTCAGGGATTTGATATGGGGGCCAAGGCTCTGAGAAAGAGCTGGGAAGGAAATATGGAGGTGAAGAGTAGTTCAAAATCGAGGGATACCAGACGCGATTCGATGTTAGAAGTTCGCATATCTACTCCTAGGAAAAGTATATCAAGTGAGAGGTTGCTGTCTAAAGAGGAGCATAAGATGCAGATACCTGCAAAGTCATTGAAGGAGGAGAATAAGGTTCAACAGTCAACAAAGAAAGTTACAGCAAATGGAACTTTGGGTGATCAAGACAGGTCAATTAAACCAAGAATATCAGTTGGAAAAAAATCATCGGATGCATCTAACAATGGATTTCCTGGAAACTTGGTCAAGGTTCCTTTAAATAACAGAAAATTGACAGATGGAGGTTTTCCATGGCCTTCACTCCCATCCTCACTTGCAAAGCTTGCAAAGGAAGTTTTGAGGCACAGGGATTCAGCACAAATGGCAGCAATAGAGGCAATGCAGGAGGCTTCTACTGCAGAGAGCTTACTACGGTGTTTGAGCATATATTCTGAGCTAATTACCACTGCAAAGGAAGATAATCCACAGCCTGCGGTAGAGCAGTTTTTAGCCCTCCATGCTAGCTTGAATAATGCTCGTCTAGTAGCTGATTCTCTATCCAAAATTACACCAGCTGGTTCATCCCCAGATCGTGAAGAAAGCCCGTCAGAAGAAGTGCTAAAGGTTACATCAGAGAGGCGGAAACGGGCAGCATCATGGGTACAAGCTGCATTAGCCACTAATTTGTCTTCCTTTGCTGTATTTAGTAAAGAGTCTTGTTCTACCTCAGTTCCAGCTTCAGCTTCCTCTCAAAACCAAAAGAATGTCTCTGCAAATCAACCCATCTTAGTTCTAGACAACTCTACCAAGAATGGCACAACAAAATCCCATGGAAAAATTTCCAAGACGGTTGGCTCCAAGGTTGGTGCCTCACCAGGGACTCCTCGACGACTAGGGGATGGATCAGCCATCAGTCAAAAACCACAGGCACAACCTCTACCTGAATGGATTAAAGGAAATGGCCTATATGAGACTGTCGACTTGGCTGAAATGTTGCGACTGCAGTCACAAGATTGGTTCTTGGGATTTGTGGAGAGGTTCCTGGATGCTGATGTGGACACTTCAGCTCTGTCAGATAATGGTCAAATATCAGGAATGCTAACTCAGCTCAAGAGTGTGAATGATTGGTTGGATAGTATTGGTTCTAATACAGATGCAGAAGAAGCAACTGCTGTTTCTGAAGAGACCATTGATAGGCTAAGGAAGAAGATCTACGAGTATCTTCTTACGCATGTTGAATCTGCTGCCGCTGCCCTTGGTGGTGGATCACAGTCATCACCGCGACTTCAAACAACAGATACAAAAGTTAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF936

Protein Analysis

733

Amino Acids

78.98

Weight (kDa)

9.55

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF936	PF06075	4 - 120	2e-58	Plant protein of unknown function (DUF936)
DUF6857	PF21647	387 - 713	5.7e-107	Domain of unknown function (DUF6857)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08760
fragaria_vesca	FvH4_1g23460
malus_domestica	MD04G1045400.v1.1 MD13G1256500.v1.1
prunus_persica	Prupe.1G198600_v2.0.a1
pyrus_communis	pycom04g03910 pycom13g27120
rosa_chinensis	RchiOBHm_Chr2g0118831
rosa_laevigata	RLG00000018424
rosa_multiflora	Rmu_sc0001814.1_g000010 Rmu_sc0015187.1_g000001 Rmu_sc0030646.1_g000003
rosa_roxburghii	Rroxscaffold_2G00124660 Rroxscaffold_2G00124670 Rroxscaffold_2G00125140
rosa_rugosa	Rorug02G0219100
rosa_samantha	Rh2AG276200 Rh2BG288000 Rh2DG283100 Rh2DG302200
rosa_wichuraiana	Rw2G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	997
AccB1I	GGYRCC	1 cut(s)	1748
AccI	GTMKAC	1 cut(s)	1860
AccII	CGCG	2 cut(s)	897, 2164
AccIII	TCCGGA	1 cut(s)	779
AciI	CCGC	5 cut(s)	276, 1376, 1522, 2130, 2162
AclWI	GGATC	2 cut(s)	1792, 2155
AcoI	YGGCCR	1 cut(s)	585
AcsI	RAATTY	5 cut(s)	394, 604, 665, 796, 1719
AcuI	CTGAAG	4 cut(s)	179, 1605, 1929, 2082
AfaI	GTAC	1 cut(s)	1545
AfiI	CCNNNNNNNGG	6 cut(s)	146, 317, 335, 765, 1758, 2076
AhlI	ACTAGT	2 cut(s)	449, 734
AjnI	CCWGG	3 cut(s)	1135, 1756, 1923
AjuI	GAANNNNNNNTTGG	4 cut(s)	566, 598, 1994, 2026
AleI	CACNNNNGTG	2 cut(s)	56, 330
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	7 cut(s)	90, 316, 408, 540, 1654, 1847, 2060
AlwI	GGATC	2 cut(s)	1792, 2155
Ama87I	CYCGRG	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	779
AoxI	GGCC	6 cut(s)	308, 585, 702, 822, 1196, 1843
ApeKI	GCWGC	6 cut(s)	25, 1268, 1532, 1550, 2126, 2132
ApoI	RAATTY	5 cut(s)	394, 604, 665, 796, 1719
Asp700I	GAANNNNTTC	1 cut(s)	1720
AspA2I	CCTAGG	1 cut(s)	929
AspS9I	GGNCC	2 cut(s)	262, 822
AsuC2I	CCSGG	3 cut(s)	17, 18, 318
AsuHPI	GGTGA	8 cut(s)	83, 140, 580, 763, 874, 1073, 1746, 2151
AsuII	TTCGAA	1 cut(s)	404
AsuNHI	GCTAGC	1 cut(s)	1403
AvaI	CYCGRG	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	262
AvrII	CCTAGG	1 cut(s)	929
AxyI	CCTNAGG	1 cut(s)	345
BaeI	ACNNNNGTAYC	3 cut(s)	174, 207, 2172
BalI	TGGCCA	1 cut(s)	587
BanI	GGYRCC	1 cut(s)	1748
BanII	GRGCYC	1 cut(s)	344
BarI	GAAGNNNNNNTAC	2 cut(s)	2078, 2110
BbsI	GAAGAC	1 cut(s)	1563
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	6 cut(s)	12, 1280, 1537, 1544, 2113, 2119
BccI	CCATC	7 cut(s)	550, 628, 1175, 1216, 1673, 1775, 1799
BciT130I	CCWGG	3 cut(s)	1137, 1758, 1925
BciVI	GTATCC	2 cut(s)	787, 880
BclI	TGATCA	1 cut(s)	1063
BcnI	CCSGG	3 cut(s)	17, 18, 318
BcoDI	GTCTC	7 cut(s)	90, 316, 408, 540, 1654, 1847, 2060
BcuI	ACTAGT	2 cut(s)	449, 734
BfaI	CTAG	7 cut(s)	450, 735, 930, 1404, 1424, 1676, 1775
BfmI	CTRYAG	2 cut(s)	1299, 1883
BfuAI	ACCTGC	1 cut(s)	997
BfuI	GTATCC	2 cut(s)	787, 880
BglII	AGATCT	1 cut(s)	2091
BisI	GCNGC	8 cut(s)	26, 276, 1269, 1533, 1551, 2127, 2130, 2133
BlnI	CCTAGG	1 cut(s)	929
BlsI	GCNGC	8 cut(s)	27, 277, 1270, 1534, 1552, 2128, 2131, 2134
Bme1390I	CCNGG	6 cut(s)	17, 18, 318, 1137, 1758, 1925
Bme18I	GGWCC	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	262, 822
BmiI	GGNNCC	6 cut(s)	341, 823, 1155, 1738, 1750, 1922
BmrFI	CCNGG	6 cut(s)	17, 18, 318, 1137, 1758, 1925
BmsI	GCATC	6 cut(s)	969, 1105, 1127, 1544, 1918, 2026
BmtI	GCTAGC	1 cut(s)	1407
BoxI	GACNNNNGTC	1 cut(s)	1885
BpiI	GAAGAC	1 cut(s)	1563
Bpu10I	CCTNAGC	2 cut(s)	711, 2081
Bpu14I	TTCGAA	1 cut(s)	404
BpuEI	CTTGAG	2 cut(s)	14, 1976
BpuMI	CCSGG	3 cut(s)	17, 18, 318
BsaI	GGTCTC	1 cut(s)	2060
BsaWI	WCCGGW	1 cut(s)	779
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	6 cut(s)	146, 317, 335, 765, 1758, 2076
Bse118I	RCCGGY	1 cut(s)	264
Bse1I	ACTGG	1 cut(s)	284
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	2 cut(s)	644, 1287
BseAI	TCCGGA	1 cut(s)	779
BseBI	CCWGG	3 cut(s)	1137, 1758, 1925
BseGI	GGATG	5 cut(s)	1120, 1208, 1463, 1786, 1933
BseLI	CCNNNNNNNGG	6 cut(s)	146, 317, 335, 765, 1758, 2076
BseMI	GCAATG	2 cut(s)	644, 1287
BseMII	CTCAG	8 cut(s)	238, 336, 420, 551, 824, 1326, 1623, 2000
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	4 cut(s)	506, 983, 1022, 1755
BseXI	GCAGC	6 cut(s)	12, 1280, 1537, 1544, 2113, 2119
BseYI	CCCAGC	1 cut(s)	843
Bsh1236I	CGCG	2 cut(s)	897, 2164
BshFI	GGCC	6 cut(s)	310, 587, 704, 824, 1198, 1845
BshNI	GGYRCC	1 cut(s)	1748
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	4 cut(s)	17, 265, 317, 780
BslFI	GGGAC	3 cut(s)	272, 741, 1774
BslI	CCNNNNNNNGG	6 cut(s)	146, 317, 335, 765, 1758, 2076
BsmAI	GTCTC	7 cut(s)	90, 316, 408, 540, 1654, 1847, 2060
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	3 cut(s)	272, 741, 1774
BsmI	GAATGC	1 cut(s)	1983
BsnI	GGCC	6 cut(s)	310, 587, 704, 824, 1198, 1845
Bso31I	GGTCTC	1 cut(s)	2060
BsoBI	CYCGRG	1 cut(s)	16
Bsp119I	TTCGAA	1 cut(s)	404
Bsp1286I	GDGCHC	2 cut(s)	78, 344
Bsp13I	TCCGGA	1 cut(s)	779
Bsp143I	GATC	6 cut(s)	527, 1063, 1471, 1784, 2091, 2147
Bsp19I	CCATGG	2 cut(s)	1193, 1711
BspACI	CCGC	5 cut(s)	276, 1376, 1522, 2130, 2162
BspANI	GGCC	6 cut(s)	310, 587, 704, 824, 1198, 1845
BspCNI	CTCAG	8 cut(s)	237, 337, 421, 550, 825, 1327, 1622, 1999
BspEI	TCCGGA	1 cut(s)	779
BspFNI	CGCG	2 cut(s)	897, 2164
BspLI	GGNNCC	6 cut(s)	341, 823, 1155, 1738, 1750, 1922
BspMAI	CTGCAG	2 cut(s)	1303, 1887
BspMI	ACCTGC	1 cut(s)	997
BspOI	GCTAGC	1 cut(s)	1407
BspPI	GGATC	2 cut(s)	1792, 2155
BspT104I	TTCGAA	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	1748
BspTNI	GGTCTC	1 cut(s)	2060
BsrDI	GCAATG	2 cut(s)	644, 1287
BsrFI	RCCGGY	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	264
BssMI	GATC	6 cut(s)	527, 1063, 1471, 1784, 2091, 2147
BssT1I	CCWWGG	7 cut(s)	145, 825, 929, 1193, 1711, 1740, 2137
Bst2UI	CCWGG	3 cut(s)	1137, 1758, 1925
Bst4CI	ACNGT	6 cut(s)	552, 1026, 1317, 1732, 1858, 2154
Bst6I	CTCTTC	2 cut(s)	860, 2058
BstAPI	GCANNNNNTGC	2 cut(s)	979, 1226
BstBI	TTCGAA	1 cut(s)	404
BstC8I	GCNNGC	3 cut(s)	1227, 1374, 1405
BstDSI	CCRYGG	2 cut(s)	1193, 1711
BstENI	CCTNNNNNAGG	1 cut(s)	333
BstF5I	GGATG	5 cut(s)	1120, 1208, 1463, 1786, 1933
BstFNI	CGCG	2 cut(s)	897, 2164
BstKTI	GATC	6 cut(s)	530, 1066, 1474, 1787, 2094, 2150
BstMAI	GTCTC	7 cut(s)	90, 316, 408, 540, 1654, 1847, 2060
BstMBI	GATC	6 cut(s)	527, 1063, 1471, 1784, 2091, 2147
BstNI	CCWGG	3 cut(s)	1137, 1758, 1925
BstNSI	RCATGY	1 cut(s)	2117
BstPAI	GACNNNNGTC	1 cut(s)	1885
BstSCI	CCNGG	6 cut(s)	15, 16, 316, 1135, 1756, 1923
BstSFI	CTRYAG	2 cut(s)	1299, 1883
BstUI	CGCG	2 cut(s)	897, 2164
BstV1I	GCAGC	6 cut(s)	12, 1280, 1537, 1544, 2113, 2119
BstV2I	GAAGAC	1 cut(s)	1563
BstX2I	RGATCY	1 cut(s)	2091
BstYI	RGATCY	1 cut(s)	2091
Bsu36I	CCTNAGG	1 cut(s)	345
BsuI	GTATCC	2 cut(s)	787, 880
BsuRI	GGCC	6 cut(s)	310, 587, 704, 824, 1198, 1845
BtgI	CCRYGG	2 cut(s)	1193, 1711
BtsCI	GGATG	5 cut(s)	1120, 1208, 1463, 1786, 1933
BtsI	GCAGTG	1 cut(s)	1347
BtsIMutI	CAGTG	2 cut(s)	232, 1347
BveI	ACCTGC	1 cut(s)	997
Cac8I	GCNNGC	3 cut(s)	1227, 1374, 1405
Cfr10I	RCCGGY	1 cut(s)	264
Cfr13I	GGNCC	2 cut(s)	262, 822
Cfr9I	CCCGGG	1 cut(s)	16
CseI	GACGC	1 cut(s)	903
Csp6I	GTAC	1 cut(s)	1544
CviQI	GTAC	1 cut(s)	1544
DpnI	GATC	6 cut(s)	529, 1065, 1473, 1786, 2093, 2149
DpnII	GATC	6 cut(s)	527, 1063, 1471, 1784, 2091, 2147
DraI	TTTAAA	1 cut(s)	1161
EaeI	YGGCCR	1 cut(s)	585
Eam1104I	CTCTTC	2 cut(s)	860, 2058
EarI	CTCTTC	2 cut(s)	860, 2058
EciI	GGCGGA	1 cut(s)	1537
Eco130I	CCWWGG	7 cut(s)	145, 825, 929, 1193, 1711, 1740, 2137
Eco147I	AGGCCT	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	344
Eco31I	GGTCTC	1 cut(s)	2060
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	4 cut(s)	179, 1605, 1929, 2082
Eco81I	CCTNAGG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	16
EcoNI	CCTNNNNNAGG	1 cut(s)	333
EcoRI	GAATTC	2 cut(s)	394, 604
EcoRII	CCWGG	3 cut(s)	1135, 1756, 1923
EcoT14I	CCWWGG	7 cut(s)	145, 825, 929, 1193, 1711, 1740, 2137
EcoT22I	ATGCAT	1 cut(s)	1120
EcoT38I	GRGCYC	1 cut(s)	344
ErhI	CCWWGG	7 cut(s)	145, 825, 929, 1193, 1711, 1740, 2137
Esp3I	CGTCTC	1 cut(s)	90
FaqI	GGGAC	3 cut(s)	272, 741, 1774
FbaI	TGATCA	1 cut(s)	1063
FblI	GTMKAC	1 cut(s)	1860
Fnu4HI	GCNGC	8 cut(s)	26, 276, 1269, 1533, 1551, 2127, 2130, 2133
FokI	GGATG	5 cut(s)	1127, 1195, 1450, 1793, 1940
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	8 cut(s)	26, 276, 1269, 1533, 1551, 2127, 2130, 2133
FspBI	CTAG	7 cut(s)	450, 735, 930, 1404, 1424, 1676, 1775
GluI	GCNGC	8 cut(s)	26, 276, 1269, 1533, 1551, 2127, 2130, 2133
GsaI	CCCAGC	1 cut(s)	847
HaeIII	GGCC	6 cut(s)	310, 587, 704, 824, 1198, 1845
HapII	CCGG	4 cut(s)	17, 265, 317, 780
HgaI	GACGC	1 cut(s)	903
HincII	GTYRAC	2 cut(s)	1029, 1861
HindII	GTYRAC	2 cut(s)	1029, 1861
HindIII	AAGCTT	2 cut(s)	32, 1223
HpaII	CCGG	4 cut(s)	17, 265, 317, 780
HphI	GGTGA	8 cut(s)	83, 140, 580, 763, 874, 1073, 1746, 2151
Hpy166II	GTNNAC	4 cut(s)	262, 1029, 1861, 1939
Hpy188III	TCNNGA	8 cut(s)	682, 780, 793, 1067, 1475, 1676, 1974, 1993
Hpy8I	GTNNAC	4 cut(s)	262, 1029, 1861, 1939
Hpy99I	CGWCG	1 cut(s)	1773
HpyAV	CCTTC	5 cut(s)	154, 568, 842, 997, 1209
HpyCH4III	ACNGT	6 cut(s)	552, 1026, 1317, 1732, 1858, 2154
Kpn2I	TCCGGA	1 cut(s)	779
Ksp22I	TGATCA	1 cut(s)	1063
Kzo9I	GATC	6 cut(s)	527, 1063, 1471, 1784, 2091, 2147
LmnI	GCTCC	4 cut(s)	339, 461, 970, 1742
Lsp1109I	GCAGC	6 cut(s)	12, 1280, 1537, 1544, 2113, 2119
LweI	GCATC	6 cut(s)	969, 1105, 1127, 1544, 1918, 2026
MaeI	CTAG	7 cut(s)	450, 735, 930, 1404, 1424, 1676, 1775
MaeIII	GTNAC	4 cut(s)	90, 1039, 1507, 1887
MalI	GATC	6 cut(s)	529, 1065, 1473, 1786, 2093, 2149
MboI	GATC	6 cut(s)	527, 1063, 1471, 1784, 2091, 2147
MfeI	CAATTG	1 cut(s)	239
MflI	RGATCY	1 cut(s)	2091
MhlI	GDGCHC	2 cut(s)	78, 344
MlsI	TGGCCA	1 cut(s)	587
MluNI	TGGCCA	1 cut(s)	587
MlyI	GAGTC	4 cut(s)	440, 763, 1604, 1756
MmeI	TCCRAC	3 cut(s)	653, 1078, 1992
Mox20I	TGGCCA	1 cut(s)	587
Mph1103I	ATGCAT	1 cut(s)	1120
MroI	TCCGGA	1 cut(s)	779
MroXI	GAANNNNTTC	1 cut(s)	1720
MscI	TGGCCA	1 cut(s)	587
MseI	TTAA	6 cut(s)	218, 381, 522, 1080, 1160, 1833
MslI	CAYNNNNRTG	3 cut(s)	56, 257, 330
Msp20I	TGGCCA	1 cut(s)	587
MspA1I	CMGCKG	2 cut(s)	1457, 2132
MspI	CCGG	4 cut(s)	17, 265, 317, 780
MspR9I	CCNGG	6 cut(s)	17, 18, 318, 1137, 1758, 1925
MunI	CAATTG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	1983
MvaI	CCWGG	3 cut(s)	1137, 1758, 1925
MvnI	CGCG	2 cut(s)	897, 2164
NciI	CCSGG	3 cut(s)	17, 18, 318
NcoI	CCATGG	2 cut(s)	1193, 1711
NdeII	GATC	6 cut(s)	527, 1063, 1471, 1784, 2091, 2147
NheI	GCTAGC	1 cut(s)	1403
NlaIV	GGNNCC	6 cut(s)	341, 823, 1155, 1738, 1750, 1922
NmuCI	GTSAC	1 cut(s)	1887
NsiI	ATGCAT	1 cut(s)	1120
NspI	RCATGY	1 cut(s)	2117
NspV	TTCGAA	1 cut(s)	404
OliI	CACNNNNGTG	2 cut(s)	56, 330
PceI	AGGCCT	1 cut(s)	310
PctI	GAATGC	1 cut(s)	1983
PdmI	GAANNNNTTC	1 cut(s)	1720
PfeI	GAWTC	9 cut(s)	7, 170, 235, 578, 685, 899, 1253, 1433, 2120
PfoI	TCCNGGA	2 cut(s)	1135, 1923
PkrI	GCNGC	8 cut(s)	27, 277, 1270, 1534, 1552, 2128, 2131, 2134
PleI	GAGTC	4 cut(s)	439, 762, 1603, 1756
PpsI	GAGTC	4 cut(s)	439, 762, 1603, 1756
PshAI	GACNNNNGTC	1 cut(s)	1885
Psp6I	CCWGG	3 cut(s)	1135, 1756, 1923
PspFI	CCCAGC	1 cut(s)	843
PspGI	CCWGG	3 cut(s)	1135, 1756, 1923
PspN4I	GGNNCC	6 cut(s)	341, 823, 1155, 1738, 1750, 1922
PspPI	GGNCC	2 cut(s)	262, 822
PstI	CTGCAG	2 cut(s)	1303, 1887
PsuI	RGATCY	1 cut(s)	2091
PvuII	CAGCTG	1 cut(s)	1457
RsaI	GTAC	1 cut(s)	1545
RsaNI	GTAC	1 cut(s)	1544
RseI	CAYNNNNRTG	3 cut(s)	56, 257, 330
SalI	GTCGAC	1 cut(s)	1859
SaqAI	TTAA	6 cut(s)	218, 381, 522, 1080, 1160, 1833
SatI	GCNGC	8 cut(s)	26, 276, 1269, 1533, 1551, 2127, 2130, 2133
Sau3AI	GATC	6 cut(s)	527, 1063, 1471, 1784, 2091, 2147
Sau96I	GGNCC	2 cut(s)	262, 822
SchI	GAGTC	4 cut(s)	440, 763, 1604, 1756
ScrFI	CCNGG	6 cut(s)	17, 18, 318, 1137, 1758, 1925
SduI	GDGCHC	2 cut(s)	78, 344
SfaNI	GCATC	6 cut(s)	969, 1105, 1127, 1544, 1918, 2026
SfcI	CTRYAG	2 cut(s)	1299, 1883
SfuI	TTCGAA	1 cut(s)	404
SinI	GGWCC	1 cut(s)	262
SmaI	CCCGGG	1 cut(s)	18
SmiMI	CAYNNNNRTG	3 cut(s)	56, 257, 330
SmlI	CTYRAG	2 cut(s)	29, 1991
SmoI	CTYRAG	2 cut(s)	29, 1991
SpeI	ACTAGT	2 cut(s)	449, 734
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	5 cut(s)	276, 1376, 1522, 2130, 2162
SspMI	CTAG	7 cut(s)	450, 735, 930, 1404, 1424, 1676, 1775
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	6 cut(s)	15, 16, 316, 1135, 1756, 1923
StyI	CCWWGG	7 cut(s)	145, 825, 929, 1193, 1711, 1740, 2137
TaaI	ACNGT	6 cut(s)	552, 1026, 1317, 1732, 1858, 2154
TaqI	TCGA	5 cut(s)	404, 881, 902, 1768, 1860
TauI	GCSGC	2 cut(s)	278, 2132
TfiI	GAWTC	9 cut(s)	7, 170, 235, 578, 685, 899, 1253, 1433, 2120
Tru1I	TTAA	6 cut(s)	218, 381, 522, 1080, 1160, 1833
Tru9I	TTAA	6 cut(s)	218, 381, 522, 1080, 1160, 1833
TscAI	CASTG	2 cut(s)	232, 1354
TseFI	GTSAC	1 cut(s)	1887
TseI	GCWGC	6 cut(s)	25, 1268, 1532, 1550, 2126, 2132
Tsp45I	GTSAC	1 cut(s)	1887
TspDTI	ATGAA	7 cut(s)	62, 219, 241, 245, 287, 633, 1452
TspMI	CCCGGG	1 cut(s)	16
TspRI	CASTG	2 cut(s)	232, 1354
VpaK11BI	GGWCC	1 cut(s)	262
XagI	CCTNNNNNAGG	1 cut(s)	333
XapI	RAATTY	5 cut(s)	394, 604, 665, 796, 1719
XbaI	TCTAGA	1 cut(s)	1675
XceI	RCATGY	1 cut(s)	2117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	712
XmaI	CCCGGG	1 cut(s)	16
XmaJI	CCTAGG	1 cut(s)	929
XmiI	GTMKAC	1 cut(s)	1860
XmnI	GAANNNNTTC	1 cut(s)	1720
XspI	CTAG	7 cut(s)	450, 735, 930, 1404, 1424, 1676, 1775
Zsp2I	ATGCAT	1 cut(s)	1120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.