Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010333

Physical Location & Seq

Genomic Coordinates Forward (+)

33096125 .. 33103443

Gene Structure 7319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG276200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2196 bp

ATGGCGAATCTTGTCCCGGGTGTGCTGCTAAAGCTTTTACAGCACATGAACACAGACGTGAAAGTGGCTGGTGAGCACAGGTCGTCTCTGTTACAAGTTGTGAGCATTGTTCCAGCTCTGGCAGGGGGTGAGCTTTTCCCAAACCAAGGCTTCTATCTTAAGGTATCAGATTCCTCTCATGCCACTTATGTATCTCTGCCTGATGAACATGATGATTTAATTCTTAGTGATAAGATTCAATTGGGTCAGTTCATACATGTGGACCGGCTTCAAGCCGCTACGCCAGTCCCCATACTTCATGGGGTTAGGCCTGTTCCGGGGAGACACCCTTGTGTAGGGAGCCCTGAGGACATTGTTGCAACACATTCTCTTGGATTTCTTAATAATGCGAATTCGGGTTCAAAAAATGGAGACAAAGTGAAATCTGAGTCTAAAGATTTAGGAACTAGTCATGGTGGAGCAAGACTAAATAGTAGTAGTGTCAAGGAGGAGAAATTAGATAAGAAAATCGGGTCTTTTAACAGATCAAAGTCTCAGCCATCTAAACCATCATTGAATATAGAGGTGAAGAAGGAATCTTTGGCCAGATTGAAGTCCTTGAATTTAAGGTCAATTCCATCATCTCCAACAAGTTGTTATTCATTGCCAACTACATTTGAGAAATTTTCGAATAGTGTCAAGAATCGGGGAAAAGTAAAGGCAACAGCTAAGGTGGGAGGTGTAGAAAAGACTAGTTCTGTTCACGGGGTGAGTCCCAATGGGAGGAAATCAGTATCCGGAAACTCAATCAAGAATTTGGTTCAGGGATTTGATATGGGGGCTAAGGCTCTGAGAAAGAGCTGGGAAGGAAATATGGAGGTGAAGAGTAGTTCAAAATCGAGGGATACCAGACGTGATTCGATGCTAGAAGTTCGCACATCTACTCCTAGGAAAAATATATCAAATGAGAGGTTGCTGTCTAAGGAGGAGCATAAGATGCAGATATCTGCAAAGTCATTGAAGGAGGAGAATAAGGTTCAACAGTCAACAAAGAAAGTTGCAGCAAATGGAACTTTGGGTGATCAAGATAGGTCAATTAAACCAAGAATATCAGTTGGAAAAAAATCATCGGATGCATCTAACAATGGATTTCCTGGAAACTTGGTCAAGGTTCCTTTAAATAACAGAAAATTGACAGATGGAGGTTTTCCATGGCCTTCACTCCCATCCTCACTTGCAAAGCTTGCAAAGGAAGTTTTGAGGCACAGGGATTCAGCACAAATGGCAGCAATAGAGGCAATGCAGGAGGCTTCTACTGCAGAGAGCTTACTACGGTGTTTGAGCATATATTCCGAGCTAATTACCACTGCAAAGGAAGATAATCCACAGCCTGCAGTAGAGCAGTTTTTAGCCCTCCATGCTAGCTTGAATAATGCTCGTCTAGTAGCTGATTCTCTATCCAAAATTACACCAGCTGGTTCATCCCCAGATCGTGAAGAAAGCCCGTCAGAAGAAGTGCTAAAGGTTACATCAGAGAGGCGGAAACGCGCAGCATCATGGGTACAAGCTGCATTAGCCACTAATTTGTCTTCCTTTGCTGTGTTTAGTAAAGAGTCTTGTTCAACCTCAGTTCCAGCTTCAGCTTCCTCTCAAAACCAAAAGAATGTCTCTGCAAATCAACCCATCTTAGTTCTAGACAACTCTACCAAGAATGGCACAACAAAATCCCAGGGAAAAATTCGCCAGACAGTTGGCTCCAAGGTTGGTGCCTCACCAGGGACTCCTCGACGACTAGGGGATGGATCAGCCATCAGTCAAAAACCACAGGCACAACCTCTACCTGAATGGATTAAAGGAAATGGCCTATATGAGACTGTCGACTTGGCTGAAATGTTGCGACTGCAGTCACAAGATTGGTTCTTGGGATTTGTGGAGAGGTTCCTGGATGCTGATGTGGACACTTCAGCTCTGTCAGATAATGGTCAAATATCAGGAATGCTAACTCAGCTCAAGAGTGTGAATGATTGGTTGGATAGTATTGGTTCTAATACAGATGCAGAAGAAGCAACGGCTGTTTCTGAAGAGACCATTGATAGGCTAAGGAAGAAGATCTACGAGTATCTTCTTACGCATGTTGAATCTGCTGCCGCTGCCCTTGGTGGTGGATCACAGTCATCACCACGACTTCAAACAACAGATACAAAAGTTAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF936

Protein Analysis

731

Amino Acids

78.81

Weight (kDa)

9.52

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF936	PF06075	4 - 120	2e-58	Plant protein of unknown function (DUF936)
DUF6857	PF21647	386 - 712	4.5e-107	Domain of unknown function (DUF6857)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08760
fragaria_vesca	FvH4_1g23460
malus_domestica	MD04G1045400.v1.1 MD13G1256500.v1.1
prunus_persica	Prupe.1G198600_v2.0.a1
pyrus_communis	pycom04g03910 pycom13g27120
rosa_chinensis	RchiOBHm_Chr2g0118831
rosa_laevigata	RLG00000018424
rosa_multiflora	Rmu_sc0001814.1_g000010 Rmu_sc0015187.1_g000001 Rmu_sc0030646.1_g000003
rosa_roxburghii	Rroxscaffold_2G00124660 Rroxscaffold_2G00124670 Rroxscaffold_2G00125140
rosa_rugosa	Rorug02G0219100
rosa_samantha	Rh2AG276200 Rh2BG288000 Rh2DG283100 Rh2DG302200
rosa_wichuraiana	Rw2G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1745
AccI	GTMKAC	1 cut(s)	1857
AccII	CGCG	1 cut(s)	1527
AccIII	TCCGGA	1 cut(s)	776
AciI	CCGC	3 cut(s)	276, 1519, 2127
AclWI	GGATC	2 cut(s)	1789, 2152
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	5 cut(s)	391, 601, 662, 793, 1716
AcuI	CTGAAG	3 cut(s)	1602, 1926, 2079
AdeI	CACNNNGTG	1 cut(s)	748
AfaI	GTAC	1 cut(s)	1542
AfiI	CCNNNNNNNGG	6 cut(s)	146, 317, 335, 762, 1755, 2073
AflII	CTTAAG	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	256
AhlI	ACTAGT	2 cut(s)	446, 731
AjiI	CACGTC	2 cut(s)	58, 893
AjnI	CCWGG	4 cut(s)	1132, 1707, 1753, 1920
AjuI	GAANNNNNNNTTGG	4 cut(s)	563, 595, 1991, 2023
AleI	CACNNNNGTG	2 cut(s)	56, 330
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	7 cut(s)	90, 316, 405, 537, 1651, 1844, 2057
AlwI	GGATC	2 cut(s)	1789, 2152
Ama87I	CYCGRG	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	776
AoxI	GGCC	4 cut(s)	308, 582, 1193, 1840
ApeKI	GCWGC	7 cut(s)	25, 1040, 1265, 1529, 1547, 2123, 2129
ApoI	RAATTY	5 cut(s)	391, 601, 662, 793, 1716
AspA2I	CCTAGG	1 cut(s)	926
AspLEI	GCGC	1 cut(s)	1529
AspS9I	GGNCC	1 cut(s)	262
AsuC2I	CCSGG	3 cut(s)	17, 18, 318
AsuHPI	GGTGA	8 cut(s)	83, 140, 577, 760, 871, 1070, 1743, 2148
AsuII	TTCGAA	1 cut(s)	668
AsuNHI	GCTAGC	1 cut(s)	1400
AvaI	CYCGRG	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	262
AvrII	CCTAGG	1 cut(s)	926
AxyI	CCTNAGG	1 cut(s)	345
BaeI	ACNNNNGTAYC	3 cut(s)	174, 207, 2169
BalI	TGGCCA	1 cut(s)	584
BanI	GGYRCC	1 cut(s)	1745
BanII	GRGCYC	1 cut(s)	344
BarI	GAAGNNNNNNTAC	2 cut(s)	2075, 2107
BbsI	GAAGAC	1 cut(s)	1560
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	7 cut(s)	12, 1052, 1277, 1534, 1541, 2110, 2116
BccI	CCATC	8 cut(s)	547, 556, 625, 1172, 1213, 1670, 1772, 1796
BceAI	ACGGC	1 cut(s)	2064
BciT130I	CCWGG	4 cut(s)	1134, 1709, 1755, 1922
BciVI	GTATCC	2 cut(s)	784, 877
BclI	TGATCA	1 cut(s)	1060
BcnI	CCSGG	3 cut(s)	17, 18, 318
BcoDI	GTCTC	7 cut(s)	90, 316, 405, 537, 1651, 1844, 2057
BcuI	ACTAGT	2 cut(s)	446, 731
BfaI	CTAG	8 cut(s)	447, 732, 905, 927, 1401, 1421, 1673, 1772
BfmI	CTRYAG	3 cut(s)	1296, 1371, 1880
BfrI	CTTAAG	1 cut(s)	158
BfuI	GTATCC	2 cut(s)	784, 877
BglII	AGATCT	1 cut(s)	2088
BisI	GCNGC	9 cut(s)	26, 276, 1041, 1266, 1530, 1548, 2124, 2127, 2130
BlnI	CCTAGG	1 cut(s)	926
BlsI	GCNGC	9 cut(s)	27, 277, 1042, 1267, 1531, 1549, 2125, 2128, 2131
Bme1390I	CCNGG	7 cut(s)	17, 18, 318, 1134, 1709, 1755, 1922
Bme18I	GGWCC	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	16
BmgBI	CACGTC	2 cut(s)	58, 893
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	5 cut(s)	341, 1152, 1735, 1747, 1919
BmrFI	CCNGG	7 cut(s)	17, 18, 318, 1134, 1709, 1755, 1922
BmsI	GCATC	7 cut(s)	891, 966, 1102, 1124, 1541, 1915, 2023
BmtI	GCTAGC	1 cut(s)	1404
BoxI	GACNNNNGTC	1 cut(s)	1882
BpiI	GAAGAC	1 cut(s)	1560
Bpu10I	CCTNAGC	3 cut(s)	708, 822, 2078
Bpu14I	TTCGAA	1 cut(s)	668
BpuEI	CTTGAG	1 cut(s)	1973
BpuMI	CCSGG	3 cut(s)	17, 18, 318
BsaI	GGTCTC	1 cut(s)	2057
BsaWI	WCCGGW	1 cut(s)	776
BsaXI	ACNNNNNCTCC	4 cut(s)	402, 432, 907, 937
Bsc4I	CCNNNNNNNGG	6 cut(s)	146, 317, 335, 762, 1755, 2073
Bse118I	RCCGGY	1 cut(s)	264
Bse1I	ACTGG	1 cut(s)	284
Bse21I	CCTNAGG	1 cut(s)	345
Bse3DI	GCAATG	2 cut(s)	641, 1284
BseAI	TCCGGA	1 cut(s)	776
BseBI	CCWGG	4 cut(s)	1134, 1709, 1755, 1922
BseGI	GGATG	5 cut(s)	1117, 1205, 1460, 1783, 1930
BseLI	CCNNNNNNNGG	6 cut(s)	146, 317, 335, 762, 1755, 2073
BseMI	GCAATG	2 cut(s)	641, 1284
BseMII	CTCAG	6 cut(s)	336, 417, 548, 821, 1620, 1997
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	4 cut(s)	503, 980, 1019, 1752
BseXI	GCAGC	7 cut(s)	12, 1052, 1277, 1534, 1541, 2110, 2116
BseYI	CCCAGC	1 cut(s)	840
Bsh1236I	CGCG	1 cut(s)	1527
BshFI	GGCC	4 cut(s)	310, 584, 1195, 1842
BshNI	GGYRCC	1 cut(s)	1745
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	4 cut(s)	17, 265, 317, 777
BslFI	GGGAC	3 cut(s)	272, 738, 1771
BslI	CCNNNNNNNGG	6 cut(s)	146, 317, 335, 762, 1755, 2073
BsmAI	GTCTC	7 cut(s)	90, 316, 405, 537, 1651, 1844, 2057
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	3 cut(s)	272, 738, 1771
BsmI	GAATGC	1 cut(s)	1980
BsnI	GGCC	4 cut(s)	310, 584, 1195, 1842
Bso31I	GGTCTC	1 cut(s)	2057
BsoBI	CYCGRG	1 cut(s)	16
Bsp119I	TTCGAA	1 cut(s)	668
Bsp1286I	GDGCHC	2 cut(s)	78, 344
Bsp13I	TCCGGA	1 cut(s)	776
Bsp143I	GATC	6 cut(s)	524, 1060, 1468, 1781, 2088, 2144
Bsp19I	CCATGG	1 cut(s)	1190
BspACI	CCGC	3 cut(s)	276, 1519, 2127
BspANI	GGCC	4 cut(s)	310, 584, 1195, 1842
BspCNI	CTCAG	6 cut(s)	337, 418, 547, 822, 1619, 1996
BspEI	TCCGGA	1 cut(s)	776
BspFNI	CGCG	1 cut(s)	1527
BspLI	GGNNCC	5 cut(s)	341, 1152, 1735, 1747, 1919
BspMAI	CTGCAG	3 cut(s)	1300, 1375, 1884
BspOI	GCTAGC	1 cut(s)	1404
BspPI	GGATC	2 cut(s)	1789, 2152
BspT104I	TTCGAA	1 cut(s)	668
BspT107I	GGYRCC	1 cut(s)	1745
BspTI	CTTAAG	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	2057
BsrDI	GCAATG	2 cut(s)	641, 1284
BsrFI	RCCGGY	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	284
BssAI	RCCGGY	1 cut(s)	264
BssMI	GATC	6 cut(s)	524, 1060, 1468, 1781, 2088, 2144
BssT1I	CCWWGG	5 cut(s)	145, 926, 1190, 1737, 2134
Bst2UI	CCWGG	4 cut(s)	1134, 1709, 1755, 1922
Bst4CI	ACNGT	5 cut(s)	1023, 1314, 1729, 1855, 2151
Bst6I	CTCTTC	2 cut(s)	857, 2055
BstAFI	CTTAAG	1 cut(s)	158
BstAPI	GCANNNNNTGC	2 cut(s)	976, 1223
BstBI	TTCGAA	1 cut(s)	668
BstC8I	GCNNGC	3 cut(s)	1224, 1371, 1402
BstDSI	CCRYGG	1 cut(s)	1190
BstENI	CCTNNNNNAGG	1 cut(s)	333
BstF5I	GGATG	5 cut(s)	1117, 1205, 1460, 1783, 1930
BstFNI	CGCG	1 cut(s)	1527
BstHHI	GCGC	1 cut(s)	1529
BstKTI	GATC	6 cut(s)	527, 1063, 1471, 1784, 2091, 2147
BstMAI	GTCTC	7 cut(s)	90, 316, 405, 537, 1651, 1844, 2057
BstMBI	GATC	6 cut(s)	524, 1060, 1468, 1781, 2088, 2144
BstNI	CCWGG	4 cut(s)	1134, 1709, 1755, 1922
BstNSI	RCATGY	2 cut(s)	260, 2114
BstPAI	GACNNNNGTC	1 cut(s)	1882
BstSCI	CCNGG	7 cut(s)	15, 16, 316, 1132, 1707, 1753, 1920
BstSFI	CTRYAG	3 cut(s)	1296, 1371, 1880
BstUI	CGCG	1 cut(s)	1527
BstV1I	GCAGC	7 cut(s)	12, 1052, 1277, 1534, 1541, 2110, 2116
BstV2I	GAAGAC	1 cut(s)	1560
BstX2I	RGATCY	1 cut(s)	2088
BstXI	CCANNNNNNTGG	1 cut(s)	1730
BstYI	RGATCY	1 cut(s)	2088
Bsu36I	CCTNAGG	1 cut(s)	345
BsuI	GTATCC	2 cut(s)	784, 877
BsuRI	GGCC	4 cut(s)	310, 584, 1195, 1842
BtgI	CCRYGG	1 cut(s)	1190
BtrI	CACGTC	2 cut(s)	58, 893
BtsCI	GGATG	5 cut(s)	1117, 1205, 1460, 1783, 1930
BtsI	GCAGTG	1 cut(s)	1344
BtsIMutI	CAGTG	1 cut(s)	1344
Cac8I	GCNNGC	3 cut(s)	1224, 1371, 1402
CfoI	GCGC	1 cut(s)	1529
Cfr10I	RCCGGY	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	262
Cfr9I	CCCGGG	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	1541
CviQI	GTAC	1 cut(s)	1541
DpnI	GATC	6 cut(s)	526, 1062, 1470, 1783, 2090, 2146
DpnII	GATC	6 cut(s)	524, 1060, 1468, 1781, 2088, 2144
DraI	TTTAAA	1 cut(s)	1158
DraIII	CACNNNGTG	1 cut(s)	748
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	2 cut(s)	857, 2055
EarI	CTCTTC	2 cut(s)	857, 2055
EciI	GGCGGA	1 cut(s)	1534
Eco130I	CCWWGG	5 cut(s)	145, 926, 1190, 1737, 2134
Eco147I	AGGCCT	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	344
Eco31I	GGTCTC	1 cut(s)	2057
Eco32I	GATATC	1 cut(s)	984
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	3 cut(s)	1602, 1926, 2079
Eco81I	CCTNAGG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	16
EcoNI	CCTNNNNNAGG	1 cut(s)	333
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	4 cut(s)	1132, 1707, 1753, 1920
EcoRV	GATATC	1 cut(s)	984
EcoT14I	CCWWGG	5 cut(s)	145, 926, 1190, 1737, 2134
EcoT22I	ATGCAT	1 cut(s)	1117
EcoT38I	GRGCYC	1 cut(s)	344
ErhI	CCWWGG	5 cut(s)	145, 926, 1190, 1737, 2134
Esp3I	CGTCTC	1 cut(s)	90
FaqI	GGGAC	3 cut(s)	272, 738, 1771
FbaI	TGATCA	1 cut(s)	1060
FblI	GTMKAC	1 cut(s)	1857
Fnu4HI	GCNGC	9 cut(s)	26, 276, 1041, 1266, 1530, 1548, 2124, 2127, 2130
FokI	GGATG	5 cut(s)	1124, 1192, 1447, 1790, 1937
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	9 cut(s)	26, 276, 1041, 1266, 1530, 1548, 2124, 2127, 2130
FspBI	CTAG	8 cut(s)	447, 732, 905, 927, 1401, 1421, 1673, 1772
GlaI	GCGC	1 cut(s)	1528
GluI	GCNGC	9 cut(s)	26, 276, 1041, 1266, 1530, 1548, 2124, 2127, 2130
GsaI	CCCAGC	1 cut(s)	844
HaeIII	GGCC	4 cut(s)	310, 584, 1195, 1842
HapII	CCGG	4 cut(s)	17, 265, 317, 777
HhaI	GCGC	1 cut(s)	1529
Hin6I	GCGC	1 cut(s)	1527
HinP1I	GCGC	1 cut(s)	1527
HincII	GTYRAC	2 cut(s)	1026, 1858
HindII	GTYRAC	2 cut(s)	1026, 1858
HindIII	AAGCTT	2 cut(s)	32, 1220
HpaII	CCGG	4 cut(s)	17, 265, 317, 777
HphI	GGTGA	8 cut(s)	83, 140, 577, 760, 871, 1070, 1743, 2148
Hpy166II	GTNNAC	5 cut(s)	262, 742, 1026, 1858, 1936
Hpy188I	TCNGA	9 cut(s)	169, 427, 831, 1111, 1333, 1489, 1513, 1954, 2059
Hpy188III	TCNNGA	8 cut(s)	679, 777, 790, 1064, 1472, 1673, 1971, 1990
Hpy8I	GTNNAC	5 cut(s)	262, 742, 1026, 1858, 1936
Hpy99I	CGWCG	1 cut(s)	1770
HpyAV	CCTTC	4 cut(s)	565, 839, 994, 1206
HpyCH4III	ACNGT	5 cut(s)	1023, 1314, 1729, 1855, 2151
HpyCH4IV	ACGT	2 cut(s)	57, 892
HpySE526I	ACGT	2 cut(s)	57, 892
HspAI	GCGC	1 cut(s)	1527
Kpn2I	TCCGGA	1 cut(s)	776
Ksp22I	TGATCA	1 cut(s)	1060
Kzo9I	GATC	6 cut(s)	524, 1060, 1468, 1781, 2088, 2144
LmnI	GCTCC	4 cut(s)	339, 458, 967, 1739
Lsp1109I	GCAGC	7 cut(s)	12, 1052, 1277, 1534, 1541, 2110, 2116
LweI	GCATC	7 cut(s)	891, 966, 1102, 1124, 1541, 1915, 2023
MaeI	CTAG	8 cut(s)	447, 732, 905, 927, 1401, 1421, 1673, 1772
MaeII	ACGT	2 cut(s)	57, 892
MaeIII	GTNAC	3 cut(s)	90, 1504, 1884
MalI	GATC	6 cut(s)	526, 1062, 1470, 1783, 2090, 2146
MboI	GATC	6 cut(s)	524, 1060, 1468, 1781, 2088, 2144
MfeI	CAATTG	1 cut(s)	239
MflI	RGATCY	1 cut(s)	2088
MhlI	GDGCHC	2 cut(s)	78, 344
MlsI	TGGCCA	1 cut(s)	584
MluNI	TGGCCA	1 cut(s)	584
MlyI	GAGTC	4 cut(s)	437, 760, 1601, 1753
MmeI	TCCRAC	3 cut(s)	650, 1075, 1989
Mox20I	TGGCCA	1 cut(s)	584
Mph1103I	ATGCAT	1 cut(s)	1117
MroI	TCCGGA	1 cut(s)	776
MscI	TGGCCA	1 cut(s)	584
MseI	TTAA	8 cut(s)	159, 218, 381, 519, 605, 1077, 1157, 1830
MslI	CAYNNNNRTG	3 cut(s)	56, 257, 330
Msp20I	TGGCCA	1 cut(s)	584
MspA1I	CMGCKG	2 cut(s)	1454, 2129
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	4 cut(s)	17, 265, 317, 777
MspR9I	CCNGG	7 cut(s)	17, 18, 318, 1134, 1709, 1755, 1922
MunI	CAATTG	1 cut(s)	239
Mva1269I	GAATGC	1 cut(s)	1980
MvaI	CCWGG	4 cut(s)	1134, 1709, 1755, 1922
MvnI	CGCG	1 cut(s)	1527
NciI	CCSGG	3 cut(s)	17, 18, 318
NcoI	CCATGG	1 cut(s)	1190
NdeII	GATC	6 cut(s)	524, 1060, 1468, 1781, 2088, 2144
NheI	GCTAGC	1 cut(s)	1400
NlaIV	GGNNCC	5 cut(s)	341, 1152, 1735, 1747, 1919
NmuCI	GTSAC	1 cut(s)	1884
NsiI	ATGCAT	1 cut(s)	1117
NspI	RCATGY	2 cut(s)	260, 2114
NspV	TTCGAA	1 cut(s)	668
OliI	CACNNNNGTG	2 cut(s)	56, 330
PasI	CCCWGGG	1 cut(s)	1708
PceI	AGGCCT	1 cut(s)	310
PciI	ACATGT	1 cut(s)	256
PctI	GAATGC	1 cut(s)	1980
PfeI	GAWTC	9 cut(s)	7, 170, 235, 575, 682, 896, 1250, 1430, 2117
PfoI	TCCNGGA	2 cut(s)	1132, 1920
PkrI	GCNGC	9 cut(s)	27, 277, 1042, 1267, 1531, 1549, 2125, 2128, 2131
PleI	GAGTC	4 cut(s)	436, 759, 1600, 1753
PpsI	GAGTC	4 cut(s)	436, 759, 1600, 1753
PscI	ACATGT	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	1882
Psp6I	CCWGG	4 cut(s)	1132, 1707, 1753, 1920
PspFI	CCCAGC	1 cut(s)	840
PspGI	CCWGG	4 cut(s)	1132, 1707, 1753, 1920
PspN4I	GGNNCC	5 cut(s)	341, 1152, 1735, 1747, 1919
PspPI	GGNCC	1 cut(s)	262
PstI	CTGCAG	3 cut(s)	1300, 1375, 1884
PsuI	RGATCY	1 cut(s)	2088
PvuII	CAGCTG	1 cut(s)	1454
RsaI	GTAC	1 cut(s)	1542
RsaNI	GTAC	1 cut(s)	1541
RseI	CAYNNNNRTG	3 cut(s)	56, 257, 330
SalI	GTCGAC	1 cut(s)	1856
SaqAI	TTAA	8 cut(s)	159, 218, 381, 519, 605, 1077, 1157, 1830
SatI	GCNGC	9 cut(s)	26, 276, 1041, 1266, 1530, 1548, 2124, 2127, 2130
Sau3AI	GATC	6 cut(s)	524, 1060, 1468, 1781, 2088, 2144
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	4 cut(s)	437, 760, 1601, 1753
ScrFI	CCNGG	7 cut(s)	17, 18, 318, 1134, 1709, 1755, 1922
SduI	GDGCHC	2 cut(s)	78, 344
SfaNI	GCATC	7 cut(s)	891, 966, 1102, 1124, 1541, 1915, 2023
SfcI	CTRYAG	3 cut(s)	1296, 1371, 1880
SfuI	TTCGAA	1 cut(s)	668
SinI	GGWCC	1 cut(s)	262
SmaI	CCCGGG	1 cut(s)	18
SmiMI	CAYNNNNRTG	3 cut(s)	56, 257, 330
SmlI	CTYRAG	2 cut(s)	158, 1988
SmoI	CTYRAG	2 cut(s)	158, 1988
SpeI	ACTAGT	2 cut(s)	446, 731
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	3 cut(s)	276, 1519, 2127
SspMI	CTAG	8 cut(s)	447, 732, 905, 927, 1401, 1421, 1673, 1772
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	7 cut(s)	15, 16, 316, 1132, 1707, 1753, 1920
StyI	CCWWGG	5 cut(s)	145, 926, 1190, 1737, 2134
TaaI	ACNGT	5 cut(s)	1023, 1314, 1729, 1855, 2151
TaiI	ACGT	2 cut(s)	60, 895
TaqI	TCGA	5 cut(s)	668, 878, 899, 1765, 1857
TauI	GCSGC	2 cut(s)	278, 2129
TfiI	GAWTC	9 cut(s)	7, 170, 235, 575, 682, 896, 1250, 1430, 2117
Tru1I	TTAA	8 cut(s)	159, 218, 381, 519, 605, 1077, 1157, 1830
Tru9I	TTAA	8 cut(s)	159, 218, 381, 519, 605, 1077, 1157, 1830
TscAI	CASTG	1 cut(s)	1351
TseFI	GTSAC	1 cut(s)	1884
TseI	GCWGC	7 cut(s)	25, 1040, 1265, 1529, 1547, 2123, 2129
Tsp45I	GTSAC	1 cut(s)	1884
TspDTI	ATGAA	6 cut(s)	62, 219, 241, 287, 630, 1449
TspMI	CCCGGG	1 cut(s)	16
TspRI	CASTG	1 cut(s)	1351
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	262
XagI	CCTNNNNNAGG	1 cut(s)	333
XapI	RAATTY	5 cut(s)	391, 601, 662, 793, 1716
XbaI	TCTAGA	1 cut(s)	1672
XceI	RCATGY	2 cut(s)	260, 2114
XmaI	CCCGGG	1 cut(s)	16
XmaJI	CCTAGG	1 cut(s)	926
XmiI	GTMKAC	1 cut(s)	1857
XspI	CTAG	8 cut(s)	447, 732, 905, 927, 1401, 1421, 1673, 1772
Zsp2I	ATGCAT	1 cut(s)	1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.