Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030646.1

Orthogroup ID

OG0010333

Physical Location & Seq

Genomic Coordinates Reverse (-)

22925 .. 23815

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030646.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgatttggccatgcagcatatattctgagctaattaccactgcaaaggaagataatccacagcctgcggtagagcagtttttagccctccatgctagcttgaataatgctcgtctagtagctgattctctatccaaaattacaccagctggttcatccccagatcgtgaagaaagcccgtcagaagaagtgctaaaggttacatcagagaggcggaaacgggcagcatcatgggtacaagctgcattagccactaatttgtcttcctttgctgtgtttagtaaagagtcttgttcaacctcagttccagcttcagcttcctctcaaaaccaaaagaatgtctctgcaaatcaacccatcttagttctagacaactctaccaagaatggcacaacaaaatcccagggaaaaattcgccagacagttggctccaaggttggtgcctcaccggggactcctcgacgactaggggatggatcagccatcagtcaaaaaccacaggcacaacctctacctgaatggattaaaggaaatggcctatatgagactgttgacttggctgaaatgttgcgactgcagtcacaagattggttcttgggatttgtggagaggttcctggatgctgatgtggacacttcagctctgtcagataatggtcaaatatcaggaatgctaactcagctcaagagtgtgaatgattggttggatagtattggttctaatacagatgcagaagaagcaacagctgtttctgaagagaccattgataggctaaggaagaaaatctacgagtatcttcttacgcatgttgaatctgctgccgctgcccttggtggtggatcacagtcatcaccgcgacttcaaacaacagatacaaaagttagaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF936

Protein Analysis

296

Amino Acids

31.9

Weight (kDa)

5.43

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08760
fragaria_vesca	FvH4_1g23460
malus_domestica	MD04G1045400.v1.1 MD13G1256500.v1.1
prunus_persica	Prupe.1G198600_v2.0.a1
pyrus_communis	pycom04g03910 pycom13g27120
rosa_chinensis	RchiOBHm_Chr2g0118831
rosa_laevigata	RLG00000018424
rosa_multiflora	Rmu_sc0001814.1_g000010 Rmu_sc0015187.1_g000001 Rmu_sc0030646.1_g000003
rosa_roxburghii	Rroxscaffold_2G00124660 Rroxscaffold_2G00124670 Rroxscaffold_2G00125140
rosa_rugosa	Rorug02G0219100
rosa_samantha	Rh2AG276200 Rh2BG288000 Rh2DG283100 Rh2DG302200
rosa_wichuraiana	Rw2G021980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	440
AccII	CGCG	1 cut(s)	856
AciI	CCGC	4 cut(s)	68, 214, 822, 854
AclWI	GGATC	2 cut(s)	484, 847
AcoI	YGGCCR	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	411
AcuI	CTGAAG	3 cut(s)	297, 621, 774
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	2 cut(s)	450, 768
AgsI	TTSAA	4 cut(s)	103, 297, 812, 863
AjnI	CCWGG	2 cut(s)	402, 615
AjuI	GAANNNNNNNTTGG	2 cut(s)	686, 718
Alw26I	GTCTC	3 cut(s)	346, 539, 752
AlwI	GGATC	2 cut(s)	484, 847
AoxI	GGCC	2 cut(s)	8, 535
ApeKI	GCWGC	5 cut(s)	15, 224, 242, 818, 824
ApoI	RAATTY	1 cut(s)	411
AsuC2I	CCSGG	1 cut(s)	450
AsuHPI	GGTGA	2 cut(s)	438, 843
AsuNHI	GCTAGC	1 cut(s)	95
BaeI	ACNNNNGTAYC	1 cut(s)	864
BalI	TGGCCA	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	440
BarI	GAAGNNNNNNTAC	2 cut(s)	770, 802
BbsI	GAAGAC	1 cut(s)	255
BbvI	GCAGC	5 cut(s)	27, 229, 236, 805, 811
BccI	CCATC	3 cut(s)	365, 467, 491
BciT130I	CCWGG	2 cut(s)	404, 617
BcnI	CCSGG	1 cut(s)	450
BcoDI	GTCTC	3 cut(s)	346, 539, 752
BfaI	CTAG	4 cut(s)	96, 116, 368, 467
BfmI	CTRYAG	1 cut(s)	575
BisI	GCNGC	6 cut(s)	16, 225, 243, 819, 822, 825
BlsI	GCNGC	6 cut(s)	17, 226, 244, 820, 823, 826
Bme1390I	CCNGG	3 cut(s)	404, 450, 617
BmiI	GGNNCC	3 cut(s)	430, 442, 614
BmrFI	CCNGG	3 cut(s)	404, 450, 617
BmsI	GCATC	3 cut(s)	236, 610, 718
BmtI	GCTAGC	1 cut(s)	99
BoxI	GACNNNNGTC	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	773
BpuEI	CTTGAG	1 cut(s)	668
BpuMI	CCSGG	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	752
BsaJI	CCNNGG	5 cut(s)	402, 403, 432, 449, 829
Bsc4I	CCNNNNNNNGG	2 cut(s)	450, 768
BseBI	CCWGG	2 cut(s)	404, 617
BseDI	CCNNGG	5 cut(s)	402, 403, 432, 449, 829
BseGI	GGATG	3 cut(s)	155, 478, 625
BseLI	CCNNNNNNNGG	2 cut(s)	450, 768
BseMII	CTCAG	3 cut(s)	18, 315, 692
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	5 cut(s)	27, 229, 236, 805, 811
Bsh1236I	CGCG	1 cut(s)	856
BshFI	GGCC	2 cut(s)	10, 537
BshNI	GGYRCC	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	2 cut(s)	450, 768
BsmAI	GTCTC	3 cut(s)	346, 539, 752
BsmFI	GGGAC	1 cut(s)	466
BsmI	GAATGC	1 cut(s)	675
BsnI	GGCC	2 cut(s)	10, 537
Bso31I	GGTCTC	1 cut(s)	752
Bsp143I	GATC	3 cut(s)	163, 476, 839
BspACI	CCGC	4 cut(s)	68, 214, 822, 854
BspANI	GGCC	2 cut(s)	10, 537
BspCNI	CTCAG	3 cut(s)	19, 314, 691
BspFNI	CGCG	1 cut(s)	856
BspLI	GGNNCC	3 cut(s)	430, 442, 614
BspMAI	CTGCAG	1 cut(s)	579
BspOI	GCTAGC	1 cut(s)	99
BspPI	GGATC	2 cut(s)	484, 847
BspT107I	GGYRCC	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	752
BssECI	CCNNGG	5 cut(s)	402, 403, 432, 449, 829
BssMI	GATC	3 cut(s)	163, 476, 839
BssT1I	CCWWGG	2 cut(s)	432, 829
Bst2UI	CCWGG	2 cut(s)	404, 617
Bst4CI	ACNGT	3 cut(s)	424, 550, 846
Bst6I	CTCTTC	1 cut(s)	750
BstC8I	GCNNGC	2 cut(s)	66, 97
BstDEI	CTNAG	5 cut(s)	27, 301, 361, 678, 773
BstF5I	GGATG	3 cut(s)	155, 478, 625
BstFNI	CGCG	1 cut(s)	856
BstKTI	GATC	3 cut(s)	166, 479, 842
BstMAI	GTCTC	3 cut(s)	346, 539, 752
BstMBI	GATC	3 cut(s)	163, 476, 839
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 248, 679, 737, 824
BstNI	CCWGG	2 cut(s)	404, 617
BstNSI	RCATGY	1 cut(s)	809
BstPAI	GACNNNNGTC	1 cut(s)	577
BstSCI	CCNGG	3 cut(s)	402, 448, 615
BstSFI	CTRYAG	1 cut(s)	575
BstUI	CGCG	1 cut(s)	856
BstV1I	GCAGC	5 cut(s)	27, 229, 236, 805, 811
BstV2I	GAAGAC	1 cut(s)	255
BstXI	CCANNNNNNTGG	1 cut(s)	425
BsuRI	GGCC	2 cut(s)	10, 537
BtsCI	GGATG	3 cut(s)	155, 478, 625
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	66, 97
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	4 cut(s)	12, 92, 231, 806
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	5 cut(s)	27, 301, 361, 678, 773
DpnI	GATC	3 cut(s)	165, 478, 841
DpnII	GATC	3 cut(s)	163, 476, 839
EaeI	YGGCCR	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
EciI	GGCGGA	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	432, 829
Eco31I	GGTCTC	1 cut(s)	752
Eco57I	CTGAAG	3 cut(s)	297, 621, 774
EcoRII	CCWGG	2 cut(s)	402, 615
EcoT14I	CCWWGG	2 cut(s)	432, 829
ErhI	CCWWGG	2 cut(s)	432, 829
FaeI	CATG	4 cut(s)	15, 95, 234, 809
FaiI	YATR	8 cut(s)	13, 20, 22, 93, 232, 541, 543, 807
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	4 cut(s)	11, 91, 230, 805
Fnu4HI	GCNGC	6 cut(s)	16, 225, 243, 819, 822, 825
FokI	GGATG	3 cut(s)	142, 485, 632
Fsp4HI	GCNGC	6 cut(s)	16, 225, 243, 819, 822, 825
FspBI	CTAG	4 cut(s)	96, 116, 368, 467
GluI	GCNGC	6 cut(s)	16, 225, 243, 819, 822, 825
HaeIII	GGCC	2 cut(s)	10, 537
HapII	CCGG	1 cut(s)	449
Hin1II	CATG	4 cut(s)	15, 95, 234, 809
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HinfI	GANTC	4 cut(s)	125, 287, 454, 812
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	2 cut(s)	438, 843
Hpy166II	GTNNAC	2 cut(s)	553, 631
Hpy188I	TCNGA	5 cut(s)	28, 184, 208, 649, 754
Hpy188III	TCNNGA	4 cut(s)	167, 368, 666, 685
Hpy8I	GTNNAC	2 cut(s)	553, 631
Hpy99I	CGWCG	1 cut(s)	465
HpyCH4III	ACNGT	3 cut(s)	424, 550, 846
HpyCH4V	TGCA	6 cut(s)	15, 44, 245, 347, 577, 731
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 248, 679, 737, 824
HpyF3I	CTNAG	5 cut(s)	27, 301, 361, 678, 773
Hsp92II	CATG	4 cut(s)	15, 95, 234, 809
Kzo9I	GATC	3 cut(s)	163, 476, 839
LmnI	GCTCC	1 cut(s)	434
Lsp1109I	GCAGC	5 cut(s)	27, 229, 236, 805, 811
LweI	GCATC	3 cut(s)	236, 610, 718
MaeI	CTAG	4 cut(s)	96, 116, 368, 467
MaeIII	GTNAC	2 cut(s)	199, 579
MalI	GATC	3 cut(s)	165, 478, 841
MboI	GATC	3 cut(s)	163, 476, 839
MboII	GAAGA	8 cut(s)	62, 182, 197, 255, 746, 767, 788, 790
MlsI	TGGCCA	1 cut(s)	10
MluCI	AATT	4 cut(s)	33, 138, 256, 411
MluNI	TGGCCA	1 cut(s)	10
MlyI	GAGTC	2 cut(s)	296, 448
MmeI	TCCRAC	1 cut(s)	684
MnlI	CCTC	8 cut(s)	98, 204, 310, 331, 454, 468, 519, 603
Mox20I	TGGCCA	1 cut(s)	10
MscI	TGGCCA	1 cut(s)	10
MseI	TTAA	1 cut(s)	525
Msp20I	TGGCCA	1 cut(s)	10
MspA1I	CMGCKG	3 cut(s)	149, 746, 824
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	3 cut(s)	404, 450, 617
Mva1269I	GAATGC	1 cut(s)	675
MvaI	CCWGG	2 cut(s)	404, 617
MvnI	CGCG	1 cut(s)	856
MwoI	GCNNNNNNNGC	5 cut(s)	92, 248, 679, 737, 824
NciI	CCSGG	1 cut(s)	450
NdeII	GATC	3 cut(s)	163, 476, 839
NheI	GCTAGC	1 cut(s)	95
NlaIII	CATG	4 cut(s)	15, 95, 234, 809
NlaIV	GGNNCC	3 cut(s)	430, 442, 614
NmuCI	GTSAC	1 cut(s)	579
NspI	RCATGY	1 cut(s)	809
PasI	CCCWGGG	1 cut(s)	403
PctI	GAATGC	1 cut(s)	675
PfeI	GAWTC	2 cut(s)	125, 812
PfoI	TCCNGGA	1 cut(s)	615
PkrI	GCNGC	6 cut(s)	17, 226, 244, 820, 823, 826
PleI	GAGTC	2 cut(s)	295, 448
PpsI	GAGTC	2 cut(s)	295, 448
PshAI	GACNNNNGTC	1 cut(s)	577
Psp6I	CCWGG	2 cut(s)	402, 615
PspGI	CCWGG	2 cut(s)	402, 615
PspN4I	GGNNCC	3 cut(s)	430, 442, 614
PstI	CTGCAG	1 cut(s)	579
PvuII	CAGCTG	2 cut(s)	149, 746
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	6 cut(s)	16, 225, 243, 819, 822, 825
Sau3AI	GATC	3 cut(s)	163, 476, 839
SchI	GAGTC	2 cut(s)	296, 448
ScrFI	CCNGG	3 cut(s)	404, 450, 617
SfaNI	GCATC	3 cut(s)	236, 610, 718
SfcI	CTRYAG	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	4 cut(s)	33, 138, 256, 411
SsiI	CCGC	4 cut(s)	68, 214, 822, 854
SspMI	CTAG	4 cut(s)	96, 116, 368, 467
StyD4I	CCNGG	3 cut(s)	402, 448, 615
StyI	CCWWGG	2 cut(s)	432, 829
TaaI	ACNGT	3 cut(s)	424, 550, 846
TaqI	TCGA	1 cut(s)	460
TasI	AATT	4 cut(s)	33, 138, 256, 411
TauI	GCSGC	1 cut(s)	824
TfiI	GAWTC	2 cut(s)	125, 812
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	579
TseI	GCWGC	5 cut(s)	15, 224, 242, 818, 824
Tsp45I	GTSAC	1 cut(s)	579
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	411
XbaI	TCTAGA	1 cut(s)	367
XceI	RCATGY	1 cut(s)	809
XspI	CTAG	4 cut(s)	96, 116, 368, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.