Rroxscaffold_2G00124670

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010333
Physical Location & Seq
Reverse (-)
59099866 .. 59100756
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00124670.1

Sequence Viewer

Length: 891 bp
ATGATTTGGCCATGCAGCATATATTCTGAGCTAATTACCACTGCAAAGGAAGATAATCCACAGCCTGCGGTAGAGCAGTTTTTAGCCCTCCATGCTAGCTTGAATAATGCTCGTCTAGTAGCTGATTCTCTATCCAAACTTACACCAGCTGGTTCATCCCCAGATCATGAAGAAAGCCCGTCAGAAGAAGTGCTAAAGGTTACATCAGAGAGGCGGAAACGGGCAACATCATGGGTACAAGCTGCATTAGCCACTAATTTGTCTTCCTTTGCTGTATTTAGTAAAGAGTCCTGTTCAACCTCAGTTCCGGCTTCAGCTTCCTCTCAAAACCAAAAGAATGTCTCTGCAAATCAACCCATCTTAGTTCTAGACAACTCTACCAAGAATGGCACAACAAAATCCCAGGGAAAAATTCGCCGGACAGTTGGCTCCAAGGTTGGTGCCTCACCAGGGACTCCTCGACGACTAGGGGATGGATCAGCCATCAGTCAAAAACCACAGACACAACCTCTACCTGAATGGATTAAAGGAAATGGCCTATATGAGACTGTCGACTTGGCTGAAATGTTGCGACTGCAGTCACAAGATTGGTTCTTGGGATTTGTAGAGAGGTTCCTGGATGCTGATGTGGACACTTCAGCTCTGTCAGATAATGGTCAAATATCAGGAATGCTAACTCAGCTCAAGAGTGTGAATGATTGGTTGGATGGTATTGGTTCTAATACAGATGCAGAAGAAGCAACTGCTGTTTCTGAAGAGACCATTGATAGGCTAAGGAAGAAGATCTACGAGTATCTTCTTACGCATGTTGAATCTGCTGCCGCTGCCCTTGGTGGTGGATCACAGTCATCACCGCGACTTCAAACAACAGATACAAAAGTTAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

296

Amino Acids

31.94

Weight (kDa)

5.56

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6857 PF21647 6 - 277 4.2e-77 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 440
AccI GTMKAC 1 cut(s) 552
AccII CGCG 1 cut(s) 856
AciI CCGC 4 cut(s) 68, 214, 822, 854
AclWI GGATC 2 cut(s) 484, 847
AcoI YGGCCR 1 cut(s) 8
AcsI RAATTY 1 cut(s) 411
AcuI CTGAAG 3 cut(s) 297, 621, 774
AfaI GTAC 1 cut(s) 237
AfiI CCNNNNNNNGG 2 cut(s) 450, 768
AgsI TTSAA 4 cut(s) 103, 297, 812, 863
AjnI CCWGG 3 cut(s) 402, 448, 615
AjuI GAANNNNNNNTTGG 2 cut(s) 686, 718
AluBI AGCT 8 cut(s) 31, 99, 122, 149, 242, 317, 641, 682
AluI AGCT 8 cut(s) 31, 99, 122, 149, 242, 317, 641, 682
Alw26I GTCTC 3 cut(s) 346, 539, 752
AlwI GGATC 2 cut(s) 484, 847
AoxI GGCC 2 cut(s) 8, 535
ApeKI GCWGC 4 cut(s) 15, 242, 818, 824
ApoI RAATTY 1 cut(s) 411
AsuHPI GGTGA 2 cut(s) 438, 843
AsuNHI GCTAGC 1 cut(s) 95
BaeI ACNNNNGTAYC 1 cut(s) 864
BalI TGGCCA 1 cut(s) 10
BanI GGYRCC 1 cut(s) 440
BarI GAAGNNNNNNTAC 2 cut(s) 770, 802
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 4 cut(s) 27, 229, 805, 811
BccI CCATC 4 cut(s) 365, 467, 491, 701
BciT130I CCWGG 3 cut(s) 404, 450, 617
BcoDI GTCTC 3 cut(s) 346, 539, 752
BfaI CTAG 4 cut(s) 96, 116, 368, 467
BfmI CTRYAG 1 cut(s) 575
BglII AGATCT 1 cut(s) 783
BisI GCNGC 5 cut(s) 16, 243, 819, 822, 825
BlsI GCNGC 5 cut(s) 17, 244, 820, 823, 826
Bme1390I CCNGG 3 cut(s) 404, 450, 617
BmiI GGNNCC 3 cut(s) 430, 442, 614
BmrFI CCNGG 3 cut(s) 404, 450, 617
BmsI GCATC 2 cut(s) 610, 718
BmtI GCTAGC 1 cut(s) 99
BoxI GACNNNNGTC 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 773
BpuEI CTTGAG 1 cut(s) 668
BsaI GGTCTC 1 cut(s) 752
BsaJI CCNNGG 5 cut(s) 402, 403, 432, 449, 829
Bsc4I CCNNNNNNNGG 2 cut(s) 450, 768
BseBI CCWGG 3 cut(s) 404, 450, 617
BseDI CCNNGG 5 cut(s) 402, 403, 432, 449, 829
BseGI GGATG 4 cut(s) 155, 478, 625, 712
BseLI CCNNNNNNNGG 2 cut(s) 450, 768
BseMII CTCAG 3 cut(s) 18, 315, 692
BseRI GAGGAG 1 cut(s) 447
BseXI GCAGC 4 cut(s) 27, 229, 805, 811
Bsh1236I CGCG 1 cut(s) 856
BshFI GGCC 2 cut(s) 10, 537
BshNI GGYRCC 1 cut(s) 440
BsiSI CCGG 2 cut(s) 308, 418
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 2 cut(s) 450, 768
BsmAI GTCTC 3 cut(s) 346, 539, 752
BsmFI GGGAC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 675
BsnI GGCC 2 cut(s) 10, 537
Bso31I GGTCTC 1 cut(s) 752
Bsp143I GATC 4 cut(s) 163, 476, 783, 839
BspACI CCGC 4 cut(s) 68, 214, 822, 854
BspANI GGCC 2 cut(s) 10, 537
BspCNI CTCAG 3 cut(s) 19, 314, 691
BspFNI CGCG 1 cut(s) 856
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 3 cut(s) 430, 442, 614
BspMAI CTGCAG 1 cut(s) 579
BspOI GCTAGC 1 cut(s) 99
BspPI GGATC 2 cut(s) 484, 847
BspT107I GGYRCC 1 cut(s) 440
BspTNI GGTCTC 1 cut(s) 752
BssECI CCNNGG 5 cut(s) 402, 403, 432, 449, 829
BssMI GATC 4 cut(s) 163, 476, 783, 839
BssT1I CCWWGG 2 cut(s) 432, 829
Bst2UI CCWGG 3 cut(s) 404, 450, 617
Bst4CI ACNGT 3 cut(s) 424, 550, 846
Bst6I CTCTTC 1 cut(s) 750
BstC8I GCNNGC 2 cut(s) 66, 97
BstDEI CTNAG 5 cut(s) 27, 301, 361, 678, 773
BstF5I GGATG 4 cut(s) 155, 478, 625, 712
BstFNI CGCG 1 cut(s) 856
BstKTI GATC 4 cut(s) 166, 479, 786, 842
BstMAI GTCTC 3 cut(s) 346, 539, 752
BstMBI GATC 4 cut(s) 163, 476, 783, 839
BstMWI GCNNNNNNNGC 5 cut(s) 92, 248, 679, 737, 824
BstNI CCWGG 3 cut(s) 404, 450, 617
BstNSI RCATGY 1 cut(s) 809
BstPAI GACNNNNGTC 1 cut(s) 577
BstSCI CCNGG 3 cut(s) 402, 448, 615
BstSFI CTRYAG 1 cut(s) 575
BstUI CGCG 1 cut(s) 856
BstV1I GCAGC 4 cut(s) 27, 229, 805, 811
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 1 cut(s) 783
BstYI RGATCY 1 cut(s) 783
BsuRI GGCC 2 cut(s) 10, 537
BtsCI GGATG 4 cut(s) 155, 478, 625, 712
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 66, 97
CciI TCATGA 1 cut(s) 166
Csp6I GTAC 1 cut(s) 236
CviAII CATG 5 cut(s) 12, 92, 167, 231, 806
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 5 cut(s) 27, 301, 361, 678, 773
DpnI GATC 4 cut(s) 165, 478, 785, 841
DpnII GATC 4 cut(s) 163, 476, 783, 839
EaeI YGGCCR 1 cut(s) 8
Eam1104I CTCTTC 1 cut(s) 750
EarI CTCTTC 1 cut(s) 750
EciI GGCGGA 1 cut(s) 229
Eco130I CCWWGG 2 cut(s) 432, 829
Eco31I GGTCTC 1 cut(s) 752
Eco57I CTGAAG 3 cut(s) 297, 621, 774
EcoRII CCWGG 3 cut(s) 402, 448, 615
EcoT14I CCWWGG 2 cut(s) 432, 829
ErhI CCWWGG 2 cut(s) 432, 829
FaeI CATG 5 cut(s) 15, 95, 170, 234, 809
FaiI YATR 9 cut(s) 13, 20, 22, 93, 168, 232, 541, 543, 807
FaqI GGGAC 1 cut(s) 466
FatI CATG 5 cut(s) 11, 91, 166, 230, 805
FblI GTMKAC 1 cut(s) 552
Fnu4HI GCNGC 5 cut(s) 16, 243, 819, 822, 825
FokI GGATG 4 cut(s) 142, 485, 632, 719
Fsp4HI GCNGC 5 cut(s) 16, 243, 819, 822, 825
FspBI CTAG 4 cut(s) 96, 116, 368, 467
GluI GCNGC 5 cut(s) 16, 243, 819, 822, 825
HaeIII GGCC 2 cut(s) 10, 537
HapII CCGG 2 cut(s) 308, 418
Hin1II CATG 5 cut(s) 15, 95, 170, 234, 809
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HinfI GANTC 4 cut(s) 125, 287, 454, 812
HpaII CCGG 2 cut(s) 308, 418
HphI GGTGA 2 cut(s) 438, 843
Hpy166II GTNNAC 2 cut(s) 553, 631
Hpy188I TCNGA 5 cut(s) 28, 184, 208, 649, 754
Hpy188III TCNNGA 4 cut(s) 167, 368, 666, 685
Hpy8I GTNNAC 2 cut(s) 553, 631
Hpy99I CGWCG 1 cut(s) 465
HpyCH4III ACNGT 3 cut(s) 424, 550, 846
HpyCH4V TGCA 6 cut(s) 15, 44, 245, 347, 577, 731
HpyF10VI GCNNNNNNNGC 5 cut(s) 92, 248, 679, 737, 824
HpyF3I CTNAG 5 cut(s) 27, 301, 361, 678, 773
Hsp92II CATG 5 cut(s) 15, 95, 170, 234, 809
Kzo9I GATC 4 cut(s) 163, 476, 783, 839
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 4 cut(s) 27, 229, 805, 811
LweI GCATC 2 cut(s) 610, 718
MaeI CTAG 4 cut(s) 96, 116, 368, 467
MaeIII GTNAC 2 cut(s) 199, 579
MalI GATC 4 cut(s) 165, 478, 785, 841
MboI GATC 4 cut(s) 163, 476, 783, 839
MboII GAAGA 9 cut(s) 62, 182, 197, 255, 746, 767, 788, 790, 793
MflI RGATCY 1 cut(s) 783
MlsI TGGCCA 1 cut(s) 10
MluCI AATT 3 cut(s) 33, 256, 411
MluNI TGGCCA 1 cut(s) 10
MlyI GAGTC 2 cut(s) 296, 448
MmeI TCCRAC 1 cut(s) 684
MnlI CCTC 8 cut(s) 98, 204, 310, 331, 454, 468, 519, 603
Mox20I TGGCCA 1 cut(s) 10
MscI TGGCCA 1 cut(s) 10
MseI TTAA 1 cut(s) 525
Msp20I TGGCCA 1 cut(s) 10
MspA1I CMGCKG 2 cut(s) 149, 824
MspI CCGG 2 cut(s) 308, 418
MspR9I CCNGG 3 cut(s) 404, 450, 617
Mva1269I GAATGC 1 cut(s) 675
MvaI CCWGG 3 cut(s) 404, 450, 617
MvnI CGCG 1 cut(s) 856
MwoI GCNNNNNNNGC 5 cut(s) 92, 248, 679, 737, 824
NdeII GATC 4 cut(s) 163, 476, 783, 839
NheI GCTAGC 1 cut(s) 95
NlaIII CATG 5 cut(s) 15, 95, 170, 234, 809
NlaIV GGNNCC 3 cut(s) 430, 442, 614
NmuCI GTSAC 1 cut(s) 579
NspI RCATGY 1 cut(s) 809
PagI TCATGA 1 cut(s) 166
PasI CCCWGGG 1 cut(s) 403
PctI GAATGC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 125, 812
PfoI TCCNGGA 1 cut(s) 615
PkrI GCNGC 5 cut(s) 17, 244, 820, 823, 826
PleI GAGTC 2 cut(s) 295, 448
PpsI GAGTC 2 cut(s) 295, 448
PshAI GACNNNNGTC 1 cut(s) 577
Psp6I CCWGG 3 cut(s) 402, 448, 615
PspGI CCWGG 3 cut(s) 402, 448, 615
PspN4I GGNNCC 3 cut(s) 430, 442, 614
PstI CTGCAG 1 cut(s) 579
PsuI RGATCY 1 cut(s) 783
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
SalI GTCGAC 1 cut(s) 551
SaqAI TTAA 1 cut(s) 525
SatI GCNGC 5 cut(s) 16, 243, 819, 822, 825
Sau3AI GATC 4 cut(s) 163, 476, 783, 839
SchI GAGTC 2 cut(s) 296, 448
ScrFI CCNGG 3 cut(s) 404, 450, 617
SfaNI GCATC 2 cut(s) 610, 718
SfcI CTRYAG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 3 cut(s) 33, 256, 411
SsiI CCGC 4 cut(s) 68, 214, 822, 854
SspMI CTAG 4 cut(s) 96, 116, 368, 467
StyD4I CCNGG 3 cut(s) 402, 448, 615
StyI CCWWGG 2 cut(s) 432, 829
TaaI ACNGT 3 cut(s) 424, 550, 846
TaqI TCGA 2 cut(s) 460, 552
TasI AATT 3 cut(s) 33, 256, 411
TauI GCSGC 1 cut(s) 824
TfiI GAWTC 2 cut(s) 125, 812
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 579
TseI GCWGC 4 cut(s) 15, 242, 818, 824
Tsp45I GTSAC 1 cut(s) 579
TspDTI ATGAA 2 cut(s) 144, 183
TspRI CASTG 1 cut(s) 46
XapI RAATTY 1 cut(s) 411
XbaI TCTAGA 1 cut(s) 367
XceI RCATGY 1 cut(s) 809
XmiI GTMKAC 1 cut(s) 552
XspI CTAG 4 cut(s) 96, 116, 368, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.