Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0019480

Physical Location & Seq

Genomic Coordinates Forward (+)

34230666 .. 34231777

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018708

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAAGACAGAGAAACCAACAACCCTCTCGGCCTTGACCTGACCTCCTTCTCTCTTCTCCATCAGAACTCAGAAGAACAAAAGCCTCTTCAAAATCAGATTGTTCAGAACCTGGTTTTGGTTTCGGTTTCGGCAATCGAGTTTGAGAAGAAGATGATTAATCCGGTTTCTTTTTCAATTTCGGCTTCAGTTTGGTCTGTTCATTCTGAGAAGAAGATGATTGACCACATGCTACAGGAATTGGAGAAGCAGCTCCTCGATGATAATGATGACGAGGAGGAAGGAGGCGACGCCGTTTCGGTACAGAATCATATCGGTCCGATCAGACCCAATAGCCAGTTTCGCCTTCGCCTACTTCGTCATCATCTTCATCCTCCTTGGTGGCGTCTCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

132

Amino Acids

15.23

Weight (kDa)

5.76

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019480)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018708
rosa_multiflora	Rmu_co8330649.1_g000001 Rmu_sc0009360.1_g000039 Rmu_sc0009360.1_g000041
rosa_roxburghii	Rroxscaffold_2G00121740
rosa_samantha	Rh3BG038000 Rh3CG036700 Rh6AG168800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	171
AcyI	GRCGYC	2 cut(s)	291, 385
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	92, 177
AjnI	CCWGG	1 cut(s)	111
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw26I	GTCTC	1 cut(s)	392
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	1 cut(s)	250
AseI	ATTAAT	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	233
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	113
BsaHI	GRCGYC	2 cut(s)	291, 385
BsaJI	CCNNGG	1 cut(s)	377
BsaWI	WCCGGW	1 cut(s)	163
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	84, 198
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	2 cut(s)	245, 290
BseXI	GCAGC	1 cut(s)	262
BshFI	GGCC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	392
BsmBI	CGTCTC	1 cut(s)	392
BsnI	GGCC	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	321
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	2 cut(s)	83, 199
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	1 cut(s)	321
BssNI	GRCGYC	2 cut(s)	291, 385
BssT1I	CCWWGG	1 cut(s)	377
Bst2UI	CCWGG	1 cut(s)	113
Bst6I	CTCTTC	2 cut(s)	60, 93
BstACI	GRCGYC	2 cut(s)	291, 385
BstDEI	CTNAG	2 cut(s)	70, 207
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	1 cut(s)	321
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	370
CaiI	CAGNNNCTG	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	317
CpoI	CGGWCCG	1 cut(s)	317
CseI	GACGC	2 cut(s)	299, 374
CsiI	ACCWGGT	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	302
CspI	CGGWCCG	1 cut(s)	317
CviAII	CATG	1 cut(s)	229
CviJI	RGCY	5 cut(s)	33, 85, 185, 253, 336
CviKI_1	RGCY	5 cut(s)	33, 85, 185, 253, 336
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	2 cut(s)	70, 207
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
Eam1104I	CTCTTC	2 cut(s)	60, 93
EarI	CTCTTC	2 cut(s)	60, 93
Eco130I	CCWWGG	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	377
Esp3I	CGTCTC	1 cut(s)	392
FaeI	CATG	1 cut(s)	232
FaiI	YATR	2 cut(s)	230, 312
FatI	CATG	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	251
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	1 cut(s)	251
GluI	GCNGC	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	1 cut(s)	164
HgaI	GACGC	2 cut(s)	299, 374
Hin1I	GRCGYC	2 cut(s)	291, 385
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	164
Hpy188I	TCNGA	8 cut(s)	66, 73, 99, 108, 208, 321, 326, 392
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	3 cut(s)	58, 275, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	2 cut(s)	70, 207
Hsp92I	GRCGYC	2 cut(s)	291, 385
Hsp92II	CATG	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	321
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	6 cut(s)	53, 98, 125, 177, 221, 350
Lsp1109I	GCAGC	1 cut(s)	262
MabI	ACCWGGT	1 cut(s)	111
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	8 cut(s)	47, 80, 86, 160, 163, 223, 226, 359
MluCI	AATT	2 cut(s)	177, 239
MnlI	CCTC	8 cut(s)	36, 55, 96, 266, 268, 271, 278, 384
MseI	TTAA	1 cut(s)	159
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	342
NdeII	GATC	1 cut(s)	321
NlaIII	CATG	1 cut(s)	232
NmeAIII	GCCGAG	1 cut(s)	9
NspI	RCATGY	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	252
PshBI	ATTAAT	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	317
PstNI	CAGNNNCTG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
Rsr2I	CGGWCCG	1 cut(s)	317
RsrII	CGGWCCG	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	4 cut(s)	42, 47, 114, 255
SexAI	ACCWGGT	1 cut(s)	111
SfcI	CTRYAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	317
Sse9I	AATT	2 cut(s)	177, 239
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	377
TaqI	TCGA	2 cut(s)	138, 258
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	2 cut(s)	177, 239
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseI	GCWGC	1 cut(s)	250
TspDTI	ATGAA	3 cut(s)	17, 191, 359
VpaK11BI	GGWCC	1 cut(s)	317
VspI	ATTAAT	1 cut(s)	159
XceI	RCATGY	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.