Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8330649.1

Orthogroup ID

OG0019480

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 890

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8330649.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 778 bp

atggataacttaagatttcttatgcttagacctatacatcttggcgacaaggcaaatctagagtatcttcctgatgcccttcaatatctctattggcataattaccctttgaaatctttgccgtcaaagttttctccagacaatcttgttgagcttcatatgccctggagcaaactcaagagactttggactaaaggccagaatcctgagaacttgaaaaggatcgatcttagttactccatggacctggctgaagttggagggctgtcgaatagtgcaaaaattgagagtataaaccttcaaggctgtaaaagtttggttcaagttccggaattgtcaaagtgtgtatacatcaagagtataaatctcctaggctgtgtaagtctggttcaagttccagacctgtcagagagtgtaaacattgagagtataaatcttcaaagctgtgcagatttggttcaagttccttcatactttcgaaagtttaccaagcttgctcatctgaatttgggatattgctcgaagattaatgttctaccaaagttaccaaggaagatggaatccttagatttaagtgaaactgcaatagaagaattgcctccatcaatttggtcgtcgactgggatcatttcacttgacctgagttattgtcgtctccttgtcagtctcccaaccgacatttgtgagttgaaatctctcgagatacttgatctctctggttgccgttgtttcacaaaatttccggaaattgtggagcccatgaaacgtctggagtatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

259

Amino Acids

29.42

Weight (kDa)

6.44

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019480)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018708
rosa_multiflora	Rmu_co8330649.1_g000001 Rmu_sc0009360.1_g000039 Rmu_sc0009360.1_g000041
rosa_roxburghii	Rroxscaffold_2G00121740
rosa_samantha	Rh3BG038000 Rh3CG036700 Rh6AG168800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	348, 617
AccIII	TCCGGA	2 cut(s)	328, 742
AclWI	GGATC	2 cut(s)	230, 632
AcsI	RAATTY	2 cut(s)	505, 737
AcuI	CTGAAG	1 cut(s)	273
AflII	CTTAAG	1 cut(s)	10
AgsI	TTSAA	9 cut(s)	83, 112, 217, 302, 323, 392, 440, 461, 691
AjnI	CCWGG	2 cut(s)	164, 246
AluBI	AGCT	3 cut(s)	154, 444, 493
AluI	AGCT	3 cut(s)	154, 444, 493
Alw26I	GTCTC	3 cut(s)	175, 659, 671
AlwI	GGATC	2 cut(s)	230, 632
Ama87I	CYCGRG	1 cut(s)	698
Aor13HI	TCCGGA	2 cut(s)	328, 742
AoxI	GGCC	1 cut(s)	196
ApoI	RAATTY	2 cut(s)	505, 737
AseI	ATTAAT	1 cut(s)	528
AspA2I	CCTAGG	1 cut(s)	370
AspS9I	GGNCC	1 cut(s)	244
AsuII	TTCGAA	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	244
AvrII	CCTAGG	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	759
BccI	CCATC	2 cut(s)	550, 610
BceAI	ACGGC	2 cut(s)	106, 708
BciT130I	CCWGG	2 cut(s)	166, 248
BcoDI	GTCTC	3 cut(s)	175, 659, 671
BfaI	CTAG	2 cut(s)	59, 371
BfrI	CTTAAG	1 cut(s)	10
BlnI	CCTAGG	1 cut(s)	370
Bme1390I	CCNGG	2 cut(s)	166, 248
Bme18I	GGWCC	1 cut(s)	244
BmeT110I	CYCGRG	1 cut(s)	698
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	756
BmrFI	CCNGG	2 cut(s)	166, 248
BmrI	ACTGGG	1 cut(s)	630
BmsI	GCATC	1 cut(s)	64
BmuI	ACTGGG	1 cut(s)	630
BpmI	CTGGAG	2 cut(s)	120, 187
Bpu14I	TTCGAA	1 cut(s)	478
BpuEI	CTTGAG	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	225
BsaJI	CCNNGG	4 cut(s)	164, 240, 370, 548
BsaWI	WCCGGW	2 cut(s)	328, 742
Bse1I	ACTGG	1 cut(s)	625
BseAI	TCCGGA	2 cut(s)	328, 742
BseBI	CCWGG	2 cut(s)	166, 248
BseCI	ATCGAT	1 cut(s)	225
BseDI	CCNNGG	4 cut(s)	164, 240, 370, 548
BseMII	CTCAG	2 cut(s)	198, 632
BseNI	ACTGG	1 cut(s)	625
BsgI	GTGCAG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	198
BshVI	ATCGAT	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	698
BsiSI	CCGG	2 cut(s)	329, 743
BsmAI	GTCTC	3 cut(s)	175, 659, 671
BsmBI	CGTCTC	1 cut(s)	659
BsnI	GGCC	1 cut(s)	198
BsoBI	CYCGRG	1 cut(s)	698
Bsp119I	TTCGAA	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	759
Bsp13I	TCCGGA	2 cut(s)	328, 742
Bsp143I	GATC	4 cut(s)	222, 226, 624, 709
Bsp19I	CCATGG	1 cut(s)	240
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	2 cut(s)	199, 633
BspDI	ATCGAT	1 cut(s)	225
BspEI	TCCGGA	2 cut(s)	328, 742
BspLI	GGNNCC	1 cut(s)	756
BspPI	GGATC	2 cut(s)	230, 632
BspT104I	TTCGAA	1 cut(s)	478
BspTI	CTTAAG	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	625
BssECI	CCNNGG	4 cut(s)	164, 240, 370, 548
BssMI	GATC	4 cut(s)	222, 226, 624, 709
BssNAI	GTATAC	1 cut(s)	349
BssT1I	CCWWGG	3 cut(s)	240, 370, 548
Bst1107I	GTATAC	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	166, 248
BstAFI	CTTAAG	1 cut(s)	10
BstBI	TTCGAA	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	5 cut(s)	26, 207, 230, 565, 641
BstDSI	CCRYGG	1 cut(s)	240
BstKTI	GATC	4 cut(s)	225, 229, 627, 712
BstMAI	GTCTC	3 cut(s)	175, 659, 671
BstMBI	GATC	4 cut(s)	222, 226, 624, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstNI	CCWGG	2 cut(s)	166, 248
BstSCI	CCNGG	2 cut(s)	164, 246
BstXI	CCANNNNNNTGG	2 cut(s)	247, 609
BstZ17I	GTATAC	1 cut(s)	349
Bsu15I	ATCGAT	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	198
BsuTUI	ATCGAT	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	244
ClaI	ATCGAT	1 cut(s)	225
CviAII	CATG	2 cut(s)	241, 760
CviJI	RGCY	9 cut(s)	154, 198, 251, 265, 306, 375, 444, 493, 757
CviKI_1	RGCY	9 cut(s)	154, 198, 251, 265, 306, 375, 444, 493, 757
DdeI	CTNAG	5 cut(s)	26, 207, 230, 565, 641
DpnI	GATC	4 cut(s)	224, 228, 626, 711
DpnII	GATC	4 cut(s)	222, 226, 624, 709
Eco130I	CCWWGG	3 cut(s)	240, 370, 548
Eco24I	GRGCYC	1 cut(s)	759
Eco47I	GGWCC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	698
EcoRII	CCWGG	2 cut(s)	164, 246
EcoT14I	CCWWGG	3 cut(s)	240, 370, 548
EcoT38I	GRGCYC	1 cut(s)	759
ErhI	CCWWGG	3 cut(s)	240, 370, 548
Esp3I	CGTCTC	1 cut(s)	659
FaeI	CATG	2 cut(s)	244, 763
FatI	CATG	2 cut(s)	240, 759
FauNDI	CATATG	1 cut(s)	159
FblI	GTMKAC	2 cut(s)	348, 617
FriOI	GRGCYC	1 cut(s)	759
FspBI	CTAG	2 cut(s)	59, 371
GsuI	CTGGAG	2 cut(s)	120, 187
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	2 cut(s)	329, 743
Hin1II	CATG	2 cut(s)	244, 763
HincII	GTYRAC	1 cut(s)	618
HindII	GTYRAC	1 cut(s)	618
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	2 cut(s)	202, 560
HpaII	CCGG	2 cut(s)	329, 743
Hpy166II	GTNNAC	4 cut(s)	349, 418, 486, 618
Hpy188I	TCNGA	2 cut(s)	409, 504
Hpy8I	GTNNAC	4 cut(s)	349, 418, 486, 618
Hpy99I	CGWCG	1 cut(s)	619
HpyAV	CCTTC	3 cut(s)	89, 308, 477
HpyCH4IV	ACGT	1 cut(s)	766
HpyCH4V	TGCA	3 cut(s)	278, 449, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	5 cut(s)	26, 207, 230, 565, 641
HpySE526I	ACGT	1 cut(s)	766
Hsp92II	CATG	2 cut(s)	244, 763
Kpn2I	TCCGGA	2 cut(s)	328, 742
Kzo9I	GATC	4 cut(s)	222, 226, 624, 709
LmnI	GCTCC	2 cut(s)	168, 754
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	2 cut(s)	59, 371
MaeII	ACGT	1 cut(s)	766
MaeIII	GTNAC	2 cut(s)	233, 543
MalI	GATC	4 cut(s)	224, 228, 626, 711
MboI	GATC	4 cut(s)	222, 226, 624, 709
MboII	GAAGA	5 cut(s)	59, 428, 535, 565, 602
MhlI	GDGCHC	1 cut(s)	759
MluCI	AATT	8 cut(s)	100, 282, 332, 505, 593, 606, 737, 747
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	2 cut(s)	254, 609
MroI	TCCGGA	2 cut(s)	328, 742
MseI	TTAA	3 cut(s)	11, 528, 572
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	2 cut(s)	329, 743
MspR9I	CCNGG	2 cut(s)	166, 248
MvaI	CCWGG	2 cut(s)	166, 248
MwoI	GCNNNNNNNGC	1 cut(s)	160
NcoI	CCATGG	1 cut(s)	240
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	4 cut(s)	222, 226, 624, 709
NlaIII	CATG	2 cut(s)	244, 763
NlaIV	GGNNCC	1 cut(s)	756
NspV	TTCGAA	1 cut(s)	478
PaeR7I	CTCGAG	1 cut(s)	698
PfeI	GAWTC	2 cut(s)	202, 560
PshBI	ATTAAT	1 cut(s)	528
Psp6I	CCWGG	2 cut(s)	164, 246
PspGI	CCWGG	2 cut(s)	164, 246
PspN4I	GGNNCC	1 cut(s)	756
PspPI	GGNCC	1 cut(s)	244
PsrI	GAACNNNNNNTAC	2 cut(s)	372, 404
SalI	GTCGAC	1 cut(s)	616
SaqAI	TTAA	3 cut(s)	11, 528, 572
Sau3AI	GATC	4 cut(s)	222, 226, 624, 709
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	166, 248
SduI	GDGCHC	1 cut(s)	759
SetI	ASST	9 cut(s)	34, 156, 249, 300, 405, 446, 495, 642, 769
SfaNI	GCATC	1 cut(s)	64
Sfr274I	CTCGAG	1 cut(s)	698
SfuI	TTCGAA	1 cut(s)	478
SinI	GGWCC	1 cut(s)	244
SlaI	CTCGAG	1 cut(s)	698
SmlI	CTYRAG	3 cut(s)	10, 176, 698
SmoI	CTYRAG	3 cut(s)	10, 176, 698
Sse9I	AATT	8 cut(s)	100, 282, 332, 505, 593, 606, 737, 747
SspMI	CTAG	2 cut(s)	59, 371
StyD4I	CCNGG	2 cut(s)	164, 246
StyI	CCWWGG	3 cut(s)	240, 370, 548
TaiI	ACGT	1 cut(s)	769
TaqI	TCGA	6 cut(s)	225, 269, 478, 521, 617, 699
TasI	AATT	8 cut(s)	100, 282, 332, 505, 593, 606, 737, 747
TfiI	GAWTC	2 cut(s)	202, 560
Tru1I	TTAA	3 cut(s)	11, 528, 572
Tru9I	TTAA	3 cut(s)	11, 528, 572
TspDTI	ATGAA	3 cut(s)	146, 459, 776
Vha464I	CTTAAG	1 cut(s)	10
VpaK11BI	GGWCC	1 cut(s)	244
VspI	ATTAAT	1 cut(s)	528
XapI	RAATTY	2 cut(s)	505, 737
XbaI	TCTAGA	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	766
XhoI	CTCGAG	1 cut(s)	698
XmaJI	CCTAGG	1 cut(s)	370
XmiI	GTMKAC	2 cut(s)	348, 617
XspI	CTAG	2 cut(s)	59, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.