Rh6AG168800

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0019480
Physical Location & Seq
Reverse (-)
27001386 .. 27028913
27528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG168800.1

Sequence Viewer

Length: 402 bp
ATGGCTTTCTCCTATGTTCCAACTTCCAAATGGAAATGTCGAAAGTTCACTAATTGTATTACCTCTCATATTAATGAAATTGGAACAAATGCAATACAATGCATAGAGTTGAGCTCACCGGATCCAACAGTTGTTGACCATCCTGATGCATTTGTGAAAATGACGAACCTGAGGATGCTCCACATTAATTCTGGGGTCCACCTCCCTAACGAACTCACCAGTCTCCCCAATAGTTTACGGATAATTGATTGGATTGAGTGTCCTCTGAAATCTTTGCCACCAAGTTTCGCACCAAAGAACCTTGTAGAAATTAAATTGTGTCGCAGTAACATTGAAAACCTTTGGACGGGTATACAGCTGGGGACAGCATGGGTGGTAGCAAAAAAACTGATGAGGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

133

Amino Acids

15.01

Weight (kDa)

8.67

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_3 PF07725 100 - 119 2e-06 Leucine Rich Repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019480)

Species Orthologous Gene IDs
rosa_laevigata RLG00000018708
rosa_multiflora Rmu_co8330649.1_g000001 Rmu_sc0009360.1_g000039 Rmu_sc0009360.1_g000041
rosa_roxburghii Rroxscaffold_2G00121740
rosa_samantha Rh3BG038000 Rh3CG036700 Rh6AG168800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 352
AclWI GGATC 2 cut(s) 116, 129
AfiI CCNNNNNNNGG 1 cut(s) 346
AgsI TTSAA 1 cut(s) 335
AluBI AGCT 2 cut(s) 114, 358
AluI AGCT 2 cut(s) 114, 358
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 2 cut(s) 116, 129
AseI ATTAAT 2 cut(s) 72, 186
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 108, 208
AvaII GGWCC 1 cut(s) 196
AxyI CCTNAGG 1 cut(s) 170
BamHI GGATCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 116
BccI CCATC 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 123, 197
BmsI GCATC 2 cut(s) 136, 165
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BsaWI WCCGGW 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 219
Bse21I CCTNAGG 1 cut(s) 170
BseGI GGATG 2 cut(s) 139, 180
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 219
BseYI CCCAGC 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 121
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 123, 197
BspPI GGATC 2 cut(s) 116, 129
BsrI ACTGG 1 cut(s) 219
BssMI GATC 1 cut(s) 121
BssNAI GTATAC 1 cut(s) 353
Bst1107I GTATAC 1 cut(s) 353
Bst4CI ACNGT 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 139, 180
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BstZ17I GTATAC 1 cut(s) 353
Bsu36I CCTNAGG 1 cut(s) 170
BtsCI GGATG 2 cut(s) 139, 180
Cfr13I GGNCC 1 cut(s) 196
CviAII CATG 1 cut(s) 369
CviJI RGCY 3 cut(s) 5, 114, 358
CviKI_1 RGCY 3 cut(s) 5, 114, 358
DdeI CTNAG 1 cut(s) 170
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Ecl136II GAGCTC 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 114
Eco81I CCTNAGG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 114
EcoT22I ATGCAT 2 cut(s) 104, 151
EcoT38I GRGCYC 1 cut(s) 116
FaeI CATG 1 cut(s) 372
FaiI YATR 5 cut(s) 15, 69, 104, 353, 370
FaqI GGGAC 1 cut(s) 376
FatI CATG 1 cut(s) 368
FblI GTMKAC 1 cut(s) 352
FokI GGATG 2 cut(s) 126, 187
FriOI GRGCYC 1 cut(s) 116
GsaI CCCAGC 1 cut(s) 362
HapII CCGG 1 cut(s) 119
Hin1II CATG 1 cut(s) 372
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HpaII CCGG 1 cut(s) 119
HphI GGTGA 2 cut(s) 108, 208
Hpy166II GTNNAC 5 cut(s) 48, 136, 199, 236, 353
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 5 cut(s) 48, 136, 199, 236, 353
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 3 cut(s) 92, 102, 149
HpyF3I CTNAG 1 cut(s) 170
Hsp92II CATG 1 cut(s) 372
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 6 cut(s) 132, 156, 177, 182, 232, 344
LweI GCATC 2 cut(s) 136, 165
MaeIII GTNAC 1 cut(s) 326
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 6 cut(s) 52, 78, 187, 243, 309, 314
MmeI TCCRAC 2 cut(s) 44, 149
MnlI CCTC 5 cut(s) 73, 165, 212, 273, 387
Mph1103I ATGCAT 2 cut(s) 104, 151
MseI TTAA 4 cut(s) 72, 186, 312, 400
MslI CAYNNNNRTG 2 cut(s) 72, 144
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 1 cut(s) 119
NdeII GATC 1 cut(s) 121
NlaIII CATG 1 cut(s) 372
NlaIV GGNNCC 2 cut(s) 123, 197
NsiI ATGCAT 2 cut(s) 104, 151
PshBI ATTAAT 2 cut(s) 72, 186
Psp124BI GAGCTC 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 358
PspN4I GGNNCC 2 cut(s) 123, 197
PspPI GGNCC 1 cut(s) 196
PsuI RGATCY 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 358
RseI CAYNNNNRTG 2 cut(s) 72, 144
SacI GAGCTC 1 cut(s) 116
SaqAI TTAA 4 cut(s) 72, 186, 312, 400
Sau3AI GATC 1 cut(s) 121
Sau96I GGNCC 1 cut(s) 196
SduI GDGCHC 1 cut(s) 116
SetI ASST 7 cut(s) 65, 116, 171, 204, 303, 342, 360
SfaNI GCATC 2 cut(s) 136, 165
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 2 cut(s) 72, 144
Sse9I AATT 6 cut(s) 52, 78, 187, 243, 309, 314
SstI GAGCTC 1 cut(s) 116
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 40
TasI AATT 6 cut(s) 52, 78, 187, 243, 309, 314
Tru1I TTAA 4 cut(s) 72, 186, 312, 400
Tru9I TTAA 4 cut(s) 72, 186, 312, 400
TspDTI ATGAA 1 cut(s) 90
TspGWI ACGGA 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 196
VspI ATTAAT 2 cut(s) 72, 186
XcmI CCANNNNNNNNNTGG 2 cut(s) 27, 188
XmiI GTMKAC 1 cut(s) 352
Zsp2I ATGCAT 2 cut(s) 104, 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.