Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019480

Physical Location & Seq

Genomic Coordinates Forward (+)

54407501 .. 54409338

Gene Structure 1838 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGTTGACCACATGCTACGGGAATTGGAGAAGCAGCTCCTCGATGATAATGATGACGAGGAGGACGGAGGCGACGCCGTTTCGATTAGCTCCGAATTGAAACTTCCTCAAGGTCTCAAGTCTCTTCCTAATGTCCTTAGATATCTGTCACGGCGGTTTTATCCTTTGGCAACTTTGCCATCAAAGTTTTCTCCAAGCTGTCTTGTTGAGCTTCATATGCCCCATAGCCAACTCCGGACTCTTTGGAATAAAGACCAGTACAGTTTGGATCATTGCACGACCTTTGAACATTTGACTCCATTTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

102

Amino Acids

11.86

Weight (kDa)

5.41

Isoelectric Point (pI)

72.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_3	PF07725	67 - 82	2.2e-06	Leucine Rich Repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0019480)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018708
rosa_multiflora	Rmu_co8330649.1_g000001 Rmu_sc0009360.1_g000039 Rmu_sc0009360.1_g000041
rosa_roxburghii	Rroxscaffold_2G00121740
rosa_samantha	Rh3BG038000 Rh3CG036700 Rh6AG168800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	234
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	100, 287
AluBI	AGCT	4 cut(s)	37, 90, 198, 211
AluI	AGCT	4 cut(s)	37, 90, 198, 211
Alw26I	GTCTC	2 cut(s)	119, 126
AlwI	GGATC	1 cut(s)	276
Aor13HI	TCCGGA	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	2 cut(s)	62, 167
BcoDI	GTCTC	2 cut(s)	119, 126
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
BpuEI	CTTGAG	2 cut(s)	93, 101
BsaHI	GRCGYC	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	271
BseAI	TCCGGA	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	2 cut(s)	29, 74
BseXI	GCAGC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	235
BsmAI	GTCTC	2 cut(s)	119, 126
Bso31I	GGTCTC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	154
BspEI	TCCGGA	1 cut(s)	234
BspPI	GGATC	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	256
BssMI	GATC	1 cut(s)	268
BssNI	GRCGYC	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	137
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	2 cut(s)	119, 126
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	46
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	5 cut(s)	37, 90, 198, 211, 228
CviKI_1	RGCY	5 cut(s)	37, 90, 198, 211, 228
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	143
FaeI	CATG	1 cut(s)	16
FaiI	YATR	4 cut(s)	14, 216, 218, 225
FatI	CATG	1 cut(s)	12
FauNDI	CATATG	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	35
HapII	CCGG	1 cut(s)	235
HgaI	GACGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	238, 295
HpaII	CCGG	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	1 cut(s)	137
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	16
Kpn2I	TCCGGA	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	2 cut(s)	42, 95
LpnPI	CCDG	2 cut(s)	248, 269
Lsp1109I	GCAGC	1 cut(s)	46
MaeIII	GTNAC	1 cut(s)	147
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	1 cut(s)	116
MluCI	AATT	2 cut(s)	23, 95
MlyI	GAGTC	2 cut(s)	232, 289
MnlI	CCTC	5 cut(s)	50, 52, 55, 62, 117
MroI	TCCGGA	1 cut(s)	234
MspI	CCGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeI	CATATG	1 cut(s)	216
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	147
NspI	RCATGY	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	2 cut(s)	232, 289
PpsI	GAGTC	2 cut(s)	232, 289
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	268
SchI	GAGTC	2 cut(s)	232, 289
SetI	ASST	6 cut(s)	39, 92, 115, 200, 213, 284
SmlI	CTYRAG	2 cut(s)	108, 116
SmoI	CTYRAG	2 cut(s)	108, 116
Sse9I	AATT	2 cut(s)	23, 95
SsiI	CCGC	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	2 cut(s)	42, 83
TasI	AATT	2 cut(s)	23, 95
TatI	WGTACW	1 cut(s)	258
TseFI	GTSAC	1 cut(s)	147
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	147
TspDTI	ATGAA	1 cut(s)	203
TspGWI	ACGGA	1 cut(s)	81
XceI	RCATGY	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.