Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009360.1

Orthogroup ID

OG0019480

Physical Location & Seq

Genomic Coordinates Reverse (-)

111079 .. 112692

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009360.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

atgcaaccagttaggaagactctactagtgaaggaagtagctggccatgatgttaagatatacgaggtggaggaattaaatggtgttgagtctcttcagctcttccattcaaatgctcgcacacattatatagaaaatccagaacttttagagcaggtggcagatcatgctgcagcaggaaatgccaaagtacaaagcatttccagcaggaattgtgttaacacactaatgttggatcctcaagctttcacagggatgcataacttaagattccttatgcttagatttatacatcttgatgacaaggaaaatataatgcatctgcctgatgcccttcaatatctcttttggcatagttaccctttgaaatcttttccatcaaagttttctcctaacaatcttgttgagcttcatatgccctggagcaaactcaagagactttggaataaaggccagaatcctaagaacttgaaaagcatcgatcttagttactccatggacctggccgatgttggagagctgtcaaatagtgtaaacattgagagtataaatcttcaaggctgtaaaagtttggttcaagttccggatttgtcagagtgtgtatacattaagagtataaatctcctaggctgtgcaagtttggttcaagtcccagacctgtcaaagagtgtaaacattgagagtataaatcttcagtactgtacaagtttggttgaagttccttcatacttccaaaagttcacaaggcttactcatttgaatttgggaaattgttggaagaatagagttctacagaagataccaagcaatatggaattcttacatttggctcatactgctatagaagatagggctgggcgcggtgcggttcgggccggtttgggcccgaaaccgcaactacaccgcattattcggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0001101 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009627 GO:0009719 GO:0009725 GO:0009733 GO:0009751 GO:0009814 GO:0009862 GO:0009863 GO:0009987 GO:0010033 GO:0010035 GO:0010193 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

305

Amino Acids

34.6

Weight (kDa)

8.45

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019480)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018708
rosa_multiflora	Rmu_co8330649.1_g000001 Rmu_sc0009360.1_g000039 Rmu_sc0009360.1_g000041
rosa_roxburghii	Rroxscaffold_2G00121740
rosa_samantha	Rh3BG038000 Rh3CG036700 Rh6AG168800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	145
Acc36I	ACCTGC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	603
AccII	CGCG	1 cut(s)	861
AccIII	TCCGGA	1 cut(s)	583
AciI	CCGC	4 cut(s)	861, 866, 893, 904
AclWI	GGATC	2 cut(s)	230, 243
AcoI	YGGCCR	2 cut(s)	43, 504
AcsI	RAATTY	2 cut(s)	760, 815
AcuI	CTGAAG	2 cut(s)	80, 677
AfaI	GTAC	3 cut(s)	192, 698, 703
AflII	CTTAAG	1 cut(s)	265
AgsI	TTSAA	9 cut(s)	111, 338, 367, 472, 557, 578, 647, 716, 760
AhlI	ACTAGT	1 cut(s)	25
AjnI	CCWGG	2 cut(s)	419, 501
AluBI	AGCT	5 cut(s)	41, 100, 245, 409, 520
AluI	AGCT	5 cut(s)	41, 100, 245, 409, 520
Alw26I	GTCTC	2 cut(s)	96, 430
AlwI	GGATC	2 cut(s)	230, 243
Aor13HI	TCCGGA	1 cut(s)	583
AoxI	GGCC	5 cut(s)	43, 451, 504, 873, 883
ApaI	GGGCCC	1 cut(s)	887
ApeKI	GCWGC	2 cut(s)	170, 173
ApoI	RAATTY	2 cut(s)	760, 815
AspA2I	CCTAGG	1 cut(s)	625
AspLEI	GCGC	1 cut(s)	861
AspS9I	GGNCC	4 cut(s)	499, 873, 883, 884
AvaII	GGWCC	1 cut(s)	499
AvrII	CCTAGG	1 cut(s)	625
BaeGI	GKGCMC	1 cut(s)	887
BalI	TGGCCA	1 cut(s)	45
BamHI	GGATCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	887
BbsI	GAAGAC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	157, 185
BccI	CCATC	1 cut(s)	385
BciT130I	CCWGG	2 cut(s)	421, 503
BcoDI	GTCTC	2 cut(s)	96, 430
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	2 cut(s)	26, 626
BfmI	CTRYAG	3 cut(s)	171, 791, 840
BfrI	CTTAAG	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	2 cut(s)	171, 174
BlnI	CCTAGG	1 cut(s)	625
BlsI	GCNGC	2 cut(s)	172, 175
BmcAI	AGTACT	1 cut(s)	698
Bme1390I	CCNGG	2 cut(s)	421, 503
Bme18I	GGWCC	1 cut(s)	499
BmgT120I	GGNCC	4 cut(s)	499, 873, 883, 884
BmiI	GGNNCC	2 cut(s)	237, 885
BmrFI	CCNGG	2 cut(s)	421, 503
BmsI	GCATC	4 cut(s)	246, 319, 328, 486
BpiI	GAAGAC	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	442
BpuEI	CTTGAG	2 cut(s)	225, 416
Bsa29I	ATCGAT	1 cut(s)	480
BsaJI	CCNNGG	3 cut(s)	419, 495, 625
BsaWI	WCCGGW	1 cut(s)	583
Bse118I	RCCGGY	1 cut(s)	875
Bse1I	ACTGG	1 cut(s)	8
BseAI	TCCGGA	1 cut(s)	583
BseBI	CCWGG	2 cut(s)	421, 503
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	3 cut(s)	419, 495, 625
BseGI	GGATG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	8
BseSI	GKGCMC	1 cut(s)	887
BseXI	GCAGC	2 cut(s)	157, 185
BseYI	CCCAGC	1 cut(s)	854
Bsh1236I	CGCG	1 cut(s)	861
BshFI	GGCC	5 cut(s)	45, 453, 506, 875, 885
BshVI	ATCGAT	1 cut(s)	480
BsiSI	CCGG	2 cut(s)	584, 876
BslFI	GGGAC	1 cut(s)	635
BsmAI	GTCTC	2 cut(s)	96, 430
BsmFI	GGGAC	1 cut(s)	635
BsnI	GGCC	5 cut(s)	45, 453, 506, 875, 885
Bsp120I	GGGCCC	1 cut(s)	883
Bsp1286I	GDGCHC	1 cut(s)	887
Bsp13I	TCCGGA	1 cut(s)	583
Bsp1407I	TGTACA	1 cut(s)	701
Bsp143I	GATC	3 cut(s)	163, 235, 481
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	4 cut(s)	861, 866, 893, 904
BspANI	GGCC	5 cut(s)	45, 453, 506, 875, 885
BspDI	ATCGAT	1 cut(s)	480
BspEI	TCCGGA	1 cut(s)	583
BspFNI	CGCG	1 cut(s)	861
BspLI	GGNNCC	2 cut(s)	237, 885
BspMAI	CTGCAG	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	2 cut(s)	230, 243
BspQI	GCTCTTC	1 cut(s)	107
BspTI	CTTAAG	1 cut(s)	265
BsrFI	RCCGGY	1 cut(s)	875
BsrGI	TGTACA	1 cut(s)	701
BsrI	ACTGG	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	875
BssECI	CCNNGG	3 cut(s)	419, 495, 625
BssMI	GATC	3 cut(s)	163, 235, 481
BssNAI	GTATAC	1 cut(s)	604
BssT1I	CCWWGG	2 cut(s)	495, 625
Bst1107I	GTATAC	1 cut(s)	604
Bst2UI	CCWGG	2 cut(s)	421, 503
Bst4CI	ACNGT	1 cut(s)	701
Bst6I	CTCTTC	2 cut(s)	99, 107
BstAFI	CTTAAG	1 cut(s)	265
BstAPI	GCANNNNNTGC	2 cut(s)	167, 182
BstAUI	TGTACA	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	43, 118
BstDEI	CTNAG	3 cut(s)	281, 462, 485
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	261
BstFNI	CGCG	1 cut(s)	861
BstHHI	GCGC	1 cut(s)	861
BstKTI	GATC	3 cut(s)	166, 238, 484
BstMAI	GTCTC	2 cut(s)	96, 430
BstMBI	GATC	3 cut(s)	163, 235, 481
BstMWI	GCNNNNNNNGC	6 cut(s)	167, 182, 204, 415, 836, 872
BstNI	CCWGG	2 cut(s)	421, 503
BstSCI	CCNGG	2 cut(s)	419, 501
BstSFI	CTRYAG	3 cut(s)	171, 791, 840
BstSLI	GKGCMC	1 cut(s)	887
BstUI	CGCG	1 cut(s)	861
BstV1I	GCAGC	2 cut(s)	157, 185
BstV2I	GAAGAC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	235
BstZ17I	GTATAC	1 cut(s)	604
Bsu15I	ATCGAT	1 cut(s)	480
BsuRI	GGCC	5 cut(s)	45, 453, 506, 875, 885
BsuTUI	ATCGAT	1 cut(s)	480
BtgI	CCRYGG	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	261
BveI	ACCTGC	1 cut(s)	145
Cac8I	GCNNGC	2 cut(s)	43, 118
CfoI	GCGC	1 cut(s)	861
Cfr10I	RCCGGY	1 cut(s)	875
Cfr13I	GGNCC	4 cut(s)	499, 873, 883, 884
ClaI	ATCGAT	1 cut(s)	480
Csp6I	GTAC	3 cut(s)	191, 697, 702
CviAII	CATG	3 cut(s)	47, 167, 496
CviQI	GTAC	3 cut(s)	191, 697, 702
DdeI	CTNAG	3 cut(s)	281, 462, 485
DpnI	GATC	3 cut(s)	165, 237, 483
DpnII	GATC	3 cut(s)	163, 235, 481
EaeI	YGGCCR	2 cut(s)	43, 504
Eam1104I	CTCTTC	2 cut(s)	99, 107
EarI	CTCTTC	2 cut(s)	99, 107
Eco130I	CCWWGG	2 cut(s)	495, 625
Eco24I	GRGCYC	1 cut(s)	887
Eco47I	GGWCC	1 cut(s)	499
Eco57I	CTGAAG	2 cut(s)	80, 677
EcoRI	GAATTC	1 cut(s)	815
EcoRII	CCWGG	2 cut(s)	419, 501
EcoT14I	CCWWGG	2 cut(s)	495, 625
EcoT22I	ATGCAT	2 cut(s)	261, 321
EcoT38I	GRGCYC	1 cut(s)	887
ErhI	CCWWGG	2 cut(s)	495, 625
FaeI	CATG	3 cut(s)	50, 170, 499
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	3 cut(s)	46, 166, 495
FauNDI	CATATG	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	2 cut(s)	171, 174
FokI	GGATG	1 cut(s)	268
FriOI	GRGCYC	1 cut(s)	887
Fsp4HI	GCNGC	2 cut(s)	171, 174
FspBI	CTAG	2 cut(s)	26, 626
GlaI	GCGC	1 cut(s)	860
GluI	GCNGC	2 cut(s)	171, 174
GsaI	CCCAGC	1 cut(s)	858
GsuI	CTGGAG	1 cut(s)	442
HaeIII	GGCC	5 cut(s)	45, 453, 506, 875, 885
HapII	CCGG	2 cut(s)	584, 876
HhaI	GCGC	1 cut(s)	861
Hin1II	CATG	3 cut(s)	50, 170, 499
Hin6I	GCGC	1 cut(s)	859
HinP1I	GCGC	1 cut(s)	859
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	4 cut(s)	19, 89, 270, 457
HpaI	GTTAAC	1 cut(s)	220
HpaII	CCGG	2 cut(s)	584, 876
Hpy166II	GTNNAC	5 cut(s)	220, 535, 604, 673, 741
Hpy188I	TCNGA	1 cut(s)	595
Hpy188III	TCNNGA	4 cut(s)	140, 296, 433, 584
Hpy8I	GTNNAC	5 cut(s)	220, 535, 604, 673, 741
HpyAV	CCTTC	3 cut(s)	25, 344, 732
HpyCH4III	ACNGT	1 cut(s)	701
HpyCH4V	TGCA	5 cut(s)	4, 173, 259, 319, 635
HpyF10VI	GCNNNNNNNGC	6 cut(s)	167, 182, 204, 415, 836, 872
HpyF3I	CTNAG	3 cut(s)	281, 462, 485
Hsp92II	CATG	3 cut(s)	50, 170, 499
HspAI	GCGC	1 cut(s)	859
Kpn2I	TCCGGA	1 cut(s)	583
KspAI	GTTAAC	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	163, 235, 481
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	423
Lsp1109I	GCAGC	2 cut(s)	157, 185
LweI	GCATC	4 cut(s)	246, 319, 328, 486
MaeI	CTAG	2 cut(s)	26, 626
MaeIII	GTNAC	2 cut(s)	356, 488
MalI	GATC	3 cut(s)	165, 237, 483
MboI	GATC	3 cut(s)	163, 235, 481
MboII	GAAGA	8 cut(s)	28, 86, 94, 545, 683, 790, 808, 857
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	887
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	5 cut(s)	74, 211, 760, 769, 815
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	13, 98
MmeI	TCCRAC	3 cut(s)	213, 493, 755
MnlI	CCTC	3 cut(s)	58, 64, 249
Mox20I	TGGCCA	1 cut(s)	45
Mph1103I	ATGCAT	2 cut(s)	261, 321
MroI	TCCGGA	1 cut(s)	583
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	5 cut(s)	54, 77, 219, 266, 609
MslI	CAYNNNNRTG	4 cut(s)	111, 227, 254, 297
Msp20I	TGGCCA	1 cut(s)	45
MspCI	CTTAAG	1 cut(s)	265
MspI	CCGG	2 cut(s)	584, 876
MspR9I	CCNGG	2 cut(s)	421, 503
MvaI	CCWGG	2 cut(s)	421, 503
MvnI	CGCG	1 cut(s)	861
MwoI	GCNNNNNNNGC	6 cut(s)	167, 182, 204, 415, 836, 872
NcoI	CCATGG	1 cut(s)	495
NdeI	CATATG	1 cut(s)	414
NdeII	GATC	3 cut(s)	163, 235, 481
NlaIII	CATG	3 cut(s)	50, 170, 499
NlaIV	GGNNCC	2 cut(s)	237, 885
NsiI	ATGCAT	2 cut(s)	261, 321
PaqCI	CACCTGC	1 cut(s)	145
PciSI	GCTCTTC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	270, 457
PkrI	GCNGC	2 cut(s)	172, 175
PleI	GAGTC	2 cut(s)	13, 97
PpsI	GAGTC	2 cut(s)	13, 97
Psp6I	CCWGG	2 cut(s)	419, 501
PspFI	CCCAGC	1 cut(s)	854
PspGI	CCWGG	2 cut(s)	419, 501
PspN4I	GGNNCC	2 cut(s)	237, 885
PspOMI	GGGCCC	1 cut(s)	883
PspPI	GGNCC	4 cut(s)	499, 873, 883, 884
PstI	CTGCAG	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	3 cut(s)	192, 698, 703
RsaNI	GTAC	3 cut(s)	191, 697, 702
RseI	CAYNNNNRTG	4 cut(s)	111, 227, 254, 297
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	5 cut(s)	54, 77, 219, 266, 609
SatI	GCNGC	2 cut(s)	171, 174
Sau3AI	GATC	3 cut(s)	163, 235, 481
Sau96I	GGNCC	4 cut(s)	499, 873, 883, 884
ScaI	AGTACT	1 cut(s)	698
SchI	GAGTC	2 cut(s)	13, 98
ScrFI	CCNGG	2 cut(s)	421, 503
SduI	GDGCHC	1 cut(s)	887
SetI	ASST	9 cut(s)	43, 69, 102, 159, 247, 411, 504, 522, 660
SfaNI	GCATC	4 cut(s)	246, 319, 328, 486
SfcI	CTRYAG	3 cut(s)	171, 791, 840
SinI	GGWCC	1 cut(s)	499
SmiMI	CAYNNNNRTG	4 cut(s)	111, 227, 254, 297
SmlI	CTYRAG	3 cut(s)	240, 265, 431
SmoI	CTYRAG	3 cut(s)	240, 265, 431
SpeI	ACTAGT	1 cut(s)	25
Sse9I	AATT	5 cut(s)	74, 211, 760, 769, 815
SsiI	CCGC	4 cut(s)	861, 866, 893, 904
SspMI	CTAG	2 cut(s)	26, 626
StyD4I	CCNGG	2 cut(s)	419, 501
StyI	CCWWGG	2 cut(s)	495, 625
TaaI	ACNGT	1 cut(s)	701
TaqI	TCGA	1 cut(s)	480
TasI	AATT	5 cut(s)	74, 211, 760, 769, 815
TatI	WGTACW	3 cut(s)	190, 696, 701
TfiI	GAWTC	2 cut(s)	270, 457
Tru1I	TTAA	5 cut(s)	54, 77, 219, 266, 609
Tru9I	TTAA	5 cut(s)	54, 77, 219, 266, 609
TseI	GCWGC	2 cut(s)	170, 173
TspDTI	ATGAA	2 cut(s)	401, 714
Vha464I	CTTAAG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	2 cut(s)	760, 815
XmaJI	CCTAGG	1 cut(s)	625
XmiI	GTMKAC	1 cut(s)	603
XspI	CTAG	2 cut(s)	26, 626
ZrmI	AGTACT	1 cut(s)	698
Zsp2I	ATGCAT	2 cut(s)	261, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.