RLG00000019340

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016890
Physical Location & Seq
Reverse (-)
50549644 .. 50550728
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019340

Sequence Viewer

Length: 720 bp
ATGTCCCTTTCAAGTTGGCTTTGCACTAAGAGCACCAAGAACATGCTCGTAAAAATTGTTCACCCCGGCGGCCACGTGGAACTTCACGATTGTACTGTTCTTGCGGCAGAGATCATGCATCGGAACCCAAGATGTTGTGTTGCCTATCCACAGATCTTCCAGAAGCCGTGGGCGATCGTTGCACCGGACACCATGCTACAGCTAGGCCAGAAGTACTATGTCGTGCCCATAAGCACCATTCGAAAGCTTCAACGCCACTCCCTAAAGTACTTGCCTTCTTCGACTCAAGAATTTCAAAACAAGATCACATCACCAGGCAAAGAAGAGGAAGTTGATCATCAAGACATGGTCAAAACTTGTTGGTTTTTCATGAATAAAAATTCTCCCAAGTTACCATATGTTTGTTTGGGACATTCTAGCAGTGACGAAAACAATGTGAATAAAAATGAGGAGGGCTGTTTCCAGAGCAATTATTGCTTTGTTTGCTTGCTAATGGGGACCAAGATTAAAGAAGATGGTGATGATTCAAAAGGGGAAGCAAAATTATCACCGAGCACCAGTACTCCTACTAGTTCTTCAGAAACCAAGGGACTTGCAAAGAAAAGGGTCGGCAGAGATTTAACAAGAATTGGGGTAAAAGGAACACCCAAGAGACTTGCACCTCTTGATAATTGGCAACCAAGTCTGGAGATCATTACTGAAGAATCAAGTACAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

240

Amino Acids

26.81

Weight (kDa)

8.66

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 6 - 234 2.5e-21 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016890)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g28900
malus_domestica MD17G1220000.v1.1
prunus_persica Prupe.3G095700_v2.0.a1
pyrus_communis pycom17g22490
rosa_laevigata RLG00000019340
rosa_multiflora Rmu_co8401069.1_g000001 Rmu_sc0016125.1_g000001 Rmu_sc0017323.1_g000012
rosa_rugosa Rorug02G0312000
rosa_samantha Rh2AG364800 Rh2BG370500 Rh2CG348000 Rh2DG387400
rosa_wichuraiana Rw2G029730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 69, 104
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 2 cut(s) 290, 379
AcuI CTGAAG 2 cut(s) 561, 720
AcvI CACGTG 1 cut(s) 76
AfaI GTAC 5 cut(s) 94, 215, 269, 562, 712
AgsI TTSAA 4 cut(s) 12, 251, 296, 528
AhlI ACTAGT 1 cut(s) 569
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 2 cut(s) 202, 247
AluI AGCT 2 cut(s) 202, 247
Alw21I GWGCWC 2 cut(s) 35, 557
Alw26I GTCTC 1 cut(s) 646
AoxI GGCC 2 cut(s) 70, 205
ApoI RAATTY 2 cut(s) 290, 379
AspS9I GGNCC 1 cut(s) 498
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 4 cut(s) 53, 303, 530, 540
AsuII TTCGAA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 498
BaeGI GKGCMC 1 cut(s) 228
BbrPI CACGTG 1 cut(s) 76
Bbv12I GWGCWC 2 cut(s) 35, 557
BccI CCATC 1 cut(s) 509
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 315
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 646
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 3 cut(s) 203, 417, 570
BfmI CTRYAG 1 cut(s) 197
BglII AGATCT 1 cut(s) 153
BisI GCNGC 2 cut(s) 70, 105
BlsI GCNGC 2 cut(s) 71, 106
BmcAI AGTACT 3 cut(s) 215, 269, 562
Bme1390I CCNGG 2 cut(s) 66, 315
Bme18I GGWCC 1 cut(s) 498
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 2 cut(s) 125, 499
BmrFI CCNGG 2 cut(s) 66, 315
BmsI GCATC 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 707
Bpu14I TTCGAA 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 76
BsaJI CCNNGG 3 cut(s) 64, 167, 585
BsaWI WCCGGW 1 cut(s) 184
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bse1I ACTGG 1 cut(s) 558
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 3 cut(s) 64, 167, 585
BseNI ACTGG 1 cut(s) 558
BseRI GAGGAG 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 228
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 72, 207
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 2 cut(s) 35, 557
BsiSI CCGG 2 cut(s) 66, 185
BslFI GGGAC 3 cut(s) 423, 511, 603
BsmAI GTCTC 1 cut(s) 646
BsmFI GGGAC 3 cut(s) 423, 511, 603
BsnI GGCC 2 cut(s) 72, 207
Bsp119I TTCGAA 1 cut(s) 241
Bsp1286I GDGCHC 3 cut(s) 35, 228, 557
Bsp143I GATC 6 cut(s) 111, 153, 174, 303, 334, 690
BspACI CCGC 2 cut(s) 69, 104
BspANI GGCC 2 cut(s) 72, 207
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 125, 499
BspT104I TTCGAA 1 cut(s) 241
BsrI ACTGG 1 cut(s) 558
BssECI CCNNGG 3 cut(s) 64, 167, 585
BssMI GATC 6 cut(s) 111, 153, 174, 303, 334, 690
BssT1I CCWWGG 1 cut(s) 585
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 318
BstAPI GCANNNNNTGC 1 cut(s) 474
BstBAI YACGTR 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 488
BstDEI CTNAG 1 cut(s) 27
BstDSI CCRYGG 1 cut(s) 167
BstKTI GATC 6 cut(s) 114, 156, 177, 306, 337, 693
BstMAI GTCTC 1 cut(s) 646
BstMBI GATC 6 cut(s) 111, 153, 174, 303, 334, 690
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 4 cut(s) 30, 179, 474, 483
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 2 cut(s) 64, 313
BstSFI CTRYAG 1 cut(s) 197
BstSLI GKGCMC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 2 cut(s) 72, 207
BtgI CCRYGG 1 cut(s) 167
BtsI GCAGTG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 427
Cac8I GCNNGC 1 cut(s) 488
CciI TCATGA 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 498
Csp6I GTAC 5 cut(s) 93, 214, 268, 561, 711
CviAII CATG 5 cut(s) 43, 115, 193, 346, 370
CviJI RGCY 7 cut(s) 19, 72, 166, 202, 207, 247, 456
CviKI_1 RGCY 7 cut(s) 19, 72, 166, 202, 207, 247, 456
CviQI GTAC 5 cut(s) 93, 214, 268, 561, 711
DdeI CTNAG 1 cut(s) 27
DpnI GATC 6 cut(s) 113, 155, 176, 305, 336, 692
DpnII GATC 6 cut(s) 111, 153, 174, 303, 334, 690
EaeI YGGCCR 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 585
Eco47I GGWCC 1 cut(s) 498
Eco57I CTGAAG 2 cut(s) 561, 720
Eco72I CACGTG 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 585
EcoT22I ATGCAT 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 585
FaeI CATG 5 cut(s) 46, 118, 196, 349, 373
FaiI YATR 9 cut(s) 44, 116, 194, 219, 230, 347, 371, 397, 399
FaqI GGGAC 3 cut(s) 423, 511, 603
FatI CATG 5 cut(s) 42, 114, 192, 345, 369
FauNDI CATATG 1 cut(s) 397
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 70, 105
Fsp4HI GCNGC 2 cut(s) 70, 105
FspBI CTAG 3 cut(s) 203, 417, 570
GluI GCNGC 2 cut(s) 70, 105
GsuI CTGGAG 1 cut(s) 707
HaeIII GGCC 2 cut(s) 72, 207
HapII CCGG 2 cut(s) 66, 185
Hin1II CATG 5 cut(s) 46, 118, 196, 349, 373
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 3 cut(s) 283, 524, 704
HpaII CCGG 2 cut(s) 66, 185
HphI GGTGA 4 cut(s) 53, 303, 530, 540
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 123, 580
Hpy188III TCNNGA 8 cut(s) 86, 160, 287, 341, 370, 463, 665, 686
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 5 cut(s) 24, 118, 182, 596, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 179, 474, 483
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 5 cut(s) 46, 118, 196, 349, 373
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 6 cut(s) 111, 153, 174, 303, 334, 690
LpnPI CCDG 9 cut(s) 79, 173, 198, 221, 300, 327, 476, 571, 671
LweI GCATC 1 cut(s) 127
MaeI CTAG 3 cut(s) 203, 417, 570
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 390, 422
MalI GATC 6 cut(s) 113, 155, 176, 305, 336, 692
MboI GATC 6 cut(s) 111, 153, 174, 303, 334, 690
MboII GAAGA 6 cut(s) 148, 270, 335, 524, 567, 713
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 3 cut(s) 35, 228, 557
MluCI AATT 8 cut(s) 54, 290, 379, 469, 542, 627, 670, 715
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 4 cut(s) 319, 442, 445, 672
Mph1103I ATGCAT 1 cut(s) 120
MseI TTAA 2 cut(s) 507, 620
MspI CCGG 2 cut(s) 66, 185
MspR9I CCNGG 2 cut(s) 66, 315
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 4 cut(s) 30, 179, 474, 483
NciI CCSGG 1 cut(s) 66
NdeI CATATG 1 cut(s) 397
NdeII GATC 6 cut(s) 111, 153, 174, 303, 334, 690
NlaIII CATG 5 cut(s) 46, 118, 196, 349, 373
NlaIV GGNNCC 2 cut(s) 125, 499
NmuCI GTSAC 1 cut(s) 422
NsiI ATGCAT 1 cut(s) 120
NspI RCATGY 1 cut(s) 46
NspV TTCGAA 1 cut(s) 241
PagI TCATGA 1 cut(s) 369
PfeI GAWTC 2 cut(s) 524, 704
PflFI GACNNNGTC 1 cut(s) 347
PkrI GCNGC 2 cut(s) 71, 106
Ple19I CGATCG 1 cut(s) 177
PleI GAGTC 1 cut(s) 277
PmaCI CACGTG 1 cut(s) 76
PmlI CACGTG 1 cut(s) 76
PpsI GAGTC 1 cut(s) 277
Ppu21I YACGTR 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 313
PspCI CACGTG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 125, 499
PspPI GGNCC 1 cut(s) 498
PsrI GAACNNNNNNTAC 2 cut(s) 42, 74
PsuI RGATCY 1 cut(s) 153
PsyI GACNNNGTC 1 cut(s) 347
PvuI CGATCG 1 cut(s) 177
RsaI GTAC 5 cut(s) 94, 215, 269, 562, 712
RsaNI GTAC 5 cut(s) 93, 214, 268, 561, 711
SaqAI TTAA 2 cut(s) 507, 620
SatI GCNGC 2 cut(s) 70, 105
Sau3AI GATC 6 cut(s) 111, 153, 174, 303, 334, 690
Sau96I GGNCC 1 cut(s) 498
ScaI AGTACT 3 cut(s) 215, 269, 562
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 2 cut(s) 66, 315
SduI GDGCHC 3 cut(s) 35, 228, 557
SetI ASST 4 cut(s) 78, 204, 249, 664
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 197
SfuI TTCGAA 1 cut(s) 241
SinI GGWCC 1 cut(s) 498
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
SpeI ACTAGT 1 cut(s) 569
Sse9I AATT 8 cut(s) 54, 290, 379, 469, 542, 627, 670, 715
SsiI CCGC 2 cut(s) 69, 104
SspMI CTAG 3 cut(s) 203, 417, 570
StyD4I CCNGG 2 cut(s) 64, 313
StyI CCWWGG 1 cut(s) 585
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 241, 281
TasI AATT 8 cut(s) 54, 290, 379, 469, 542, 627, 670, 715
TatI WGTACW 5 cut(s) 92, 213, 267, 560, 710
TauI GCSGC 2 cut(s) 72, 107
TfiI GAWTC 2 cut(s) 524, 704
Tru1I TTAA 2 cut(s) 507, 620
Tru9I TTAA 2 cut(s) 507, 620
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 1 cut(s) 422
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 2 cut(s) 358, 386
TspRI CASTG 1 cut(s) 427
Tth111I GACNNNGTC 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 498
XapI RAATTY 2 cut(s) 290, 379
XceI RCATGY 1 cut(s) 46
XspI CTAG 3 cut(s) 203, 417, 570
ZrmI AGTACT 3 cut(s) 215, 269, 562
Zsp2I ATGCAT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.