Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003615

Physical Location & Seq

Genomic Coordinates Forward (+)

37630122 .. 37634034

Gene Structure 3913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0312000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAATTCCTTGCTACGTTTTGTGTACAGAGAGTTAGATTATGTTAGTTTTCTTGAATTCCTTGCTACGTTTTGGGATTCCTTCTTTTTCTTTTGTTTCTTTGTGATTGATGATGTCCTGGGTCAGGAATCAAGAACTGACTTGAAATTAAAACCCCTTTGGGGAAAATGGCCTGATATTGTTTGCTGTGTAGAGGGACTCTGTTCTTTGTCGCTTGAAGAAAAAAGGATGGCATCAAACAATCGAAAGCTGAAGGGAAAAAGATACCTAAGAACGAATGATGGACCAAATGATAATGATCAACAAAAAATGCAGAATGTGTTGGATGGTCACACTACTGCTACCTTTTTTGATAACAATATCAATCGTCGAATCAAATCAAGAAGATGGATAGAAGTGTCTGAAGCGGTGGTTGAGGATAGCCGGGTAAAGCAACACAACGATGATGGTATCAATGTAATACAACATCGAGATAAGCGAGTTAGAAATAATCGAGAGACGTCAAATGTGACAATGAAGCGAACTACTGTTACTGAGGCTAATTCGAATGGTAATGGTCAGGGTGGAACTGGCGAACATTTACATTCCTTCGGTCAAGCAAGCTATCAAAGCACTAGACAAGGTAATTTTTTTTTTTTTTTTTTTCAAAATTGTATCTATTATACTTATCAAAATAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4228

Protein Analysis

226

Amino Acids

26.58

Weight (kDa)

8.79

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80650 AT1G80650 AT1G80650 AT1G80650 AT4G00420 AT4G00420 AT4G00420 AT4G00420 AT4G00420
fragaria_vesca	FvH4_2g22602
malus_domestica	MD17G1220100.v1.1
prunus_persica	Prupe.3G095800_v2.0.a1 Prupe.3G095800_v2.0.a1
pyrus_communis	pycom17g22500
rosa_laevigata	RLG00000012284 RLG00000019337
rosa_multiflora	Rmu_co8221574.1_g000001 Rmu_sc0007236.1_g000004
rosa_roxburghii	Rroxscaffold_2G00111090 Rroxscaffold_7G00177730 Rroxscaffold_7G00177760
rosa_rugosa	Rorug02G0312000 Rorug06G0205600 Rorug06G0205600
rosa_samantha	Rh2AG364600 Rh2BG370300 Rh2CG276500 Rh2CG347900 Rh6AG317100 Rh6BG323700 Rh6BG324100 Rh6CG330300 Rh6DG315500
rosa_wichuraiana	Rw2G029720 Rw6G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	503
AciI	CCGC	1 cut(s)	407
AcsI	RAATTY	2 cut(s)	4, 56
AcuI	CTGAAG	2 cut(s)	272, 423
AcyI	GRCGYC	1 cut(s)	500
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	124, 161
AgsI	TTSAA	4 cut(s)	56, 145, 218, 647
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	2 cut(s)	250, 603
AluI	AGCT	2 cut(s)	250, 603
Alw26I	GTCTC	1 cut(s)	491
AoxI	GGCC	1 cut(s)	170
ApoI	RAATTY	2 cut(s)	4, 56
AspS9I	GGNCC	1 cut(s)	284
AsuC2I	CCSGG	1 cut(s)	425
AsuII	TTCGAA	1 cut(s)	545
AvaII	GGWCC	1 cut(s)	284
BccI	CCATC	5 cut(s)	223, 275, 320, 381, 440
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	1 cut(s)	615
Bme1390I	CCNGG	2 cut(s)	119, 425
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmrFI	CCNGG	2 cut(s)	119, 425
BmsI	GCATC	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	425
BsaBI	GATNNNNATC	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 161
Bse1I	ACTGG	1 cut(s)	574
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	234, 331
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	2 cut(s)	124, 161
BseMII	CTCAG	1 cut(s)	525
BseNI	ACTGG	1 cut(s)	574
BshFI	GGCC	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	210
BslI	CCNNNNNNNGG	2 cut(s)	124, 161
BsmAI	GTCTC	1 cut(s)	491
BsmBI	CGTCTC	1 cut(s)	491
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	172
Bsp119I	TTCGAA	1 cut(s)	545
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	1 cut(s)	407
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	526
BspT104I	TTCGAA	1 cut(s)	545
BsrGI	TGTACA	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	574
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	529
BstACI	GRCGYC	1 cut(s)	500
BstAUI	TGTACA	1 cut(s)	24
BstBI	TTCGAA	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	601
BstDEI	CTNAG	2 cut(s)	269, 534
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	234, 331
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	1 cut(s)	609
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	117, 423
BsuRI	GGCC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	234, 331
Cac8I	GCNNGC	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	25
CviJI	RGCY	5 cut(s)	172, 250, 423, 539, 603
CviKI_1	RGCY	5 cut(s)	172, 250, 423, 539, 603
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	2 cut(s)	269, 534
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	284
Eco57I	CTGAAG	2 cut(s)	272, 423
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoRI	GAATTC	2 cut(s)	4, 56
EcoRII	CCWGG	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	491
FaiI	YATR	2 cut(s)	42, 663
FaqI	GGGAC	1 cut(s)	210
FbaI	TGATCA	1 cut(s)	298
FokI	GGATG	2 cut(s)	241, 338
FspBI	CTAG	1 cut(s)	615
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	1 cut(s)	424
Hin1I	GRCGYC	1 cut(s)	500
HinfI	GANTC	4 cut(s)	77, 128, 198, 372
HpaII	CCGG	1 cut(s)	424
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	6 cut(s)	53, 125, 132, 381, 470, 494
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	372
HpyAV	CCTTC	3 cut(s)	91, 247, 598
HpyCH4III	ACNGT	1 cut(s)	529
HpyCH4IV	ACGT	3 cut(s)	16, 68, 500
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	609
HpyF3I	CTNAG	2 cut(s)	269, 534
HpySE526I	ACGT	3 cut(s)	16, 68, 500
Hsp92I	GRCGYC	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	298
LpnPI	CCDG	7 cut(s)	104, 110, 131, 186, 437, 545, 555
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	615
MaeII	ACGT	3 cut(s)	16, 68, 500
MaeIII	GTNAC	3 cut(s)	329, 508, 529
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	2 cut(s)	230, 396
MluCI	AATT	6 cut(s)	4, 56, 146, 541, 625, 649
MlyI	GAGTC	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	3 cut(s)	187, 409, 529
MseI	TTAA	1 cut(s)	149
MslI	CAYNNNNRTG	1 cut(s)	441
MspI	CCGG	1 cut(s)	424
MspR9I	CCNGG	2 cut(s)	119, 425
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	609
NciI	CCSGG	1 cut(s)	425
NdeII	GATC	1 cut(s)	298
NmuCI	GTSAC	2 cut(s)	329, 508
NspV	TTCGAA	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PfeI	GAWTC	3 cut(s)	77, 128, 372
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	284
PsrI	GAACNNNNNNTAC	2 cut(s)	514, 546
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	149
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	2 cut(s)	119, 425
SetI	ASST	8 cut(s)	19, 71, 252, 270, 347, 503, 605, 625
SfaNI	GCATC	1 cut(s)	242
SfuI	TTCGAA	1 cut(s)	545
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	441
Sse9I	AATT	6 cut(s)	4, 56, 146, 541, 625, 649
SsiI	CCGC	1 cut(s)	407
SspMI	CTAG	1 cut(s)	615
StyD4I	CCNGG	2 cut(s)	117, 423
TaaI	ACNGT	1 cut(s)	529
TaiI	ACGT	3 cut(s)	19, 71, 503
TaqI	TCGA	5 cut(s)	244, 370, 469, 493, 545
TaqII	GACCGA	1 cut(s)	581
TasI	AATT	6 cut(s)	4, 56, 146, 541, 625, 649
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	3 cut(s)	77, 128, 372
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TseFI	GTSAC	2 cut(s)	329, 508
Tsp45I	GTSAC	2 cut(s)	329, 508
TspDTI	ATGAA	2 cut(s)	17, 530
VpaK11BI	GGWCC	1 cut(s)	284
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	2 cut(s)	4, 56
XspI	CTAG	1 cut(s)	615
ZraI	GACGTC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.