Rh6AG317100

Ribonuclease 3-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003615
Physical Location & Seq
Reverse (-)
51558906 .. 51593645
34740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG317100.1

Sequence Viewer

Length: 597 bp
ATGAATCAAAACGCTGATGGAAGAGCTTTCCTCAACATTGAAGAAGATTCAGAATCGATAAGCAGCAATGAGCCTATACCAGATGAGGTCCCTCTGCAGCAGGCGGACACACCGGGGCCTTTTCTTAAGTCTCTGGGTTTGGAACCACCGATTCCACCAGCTGCTACTTCATGGTCAGATAACCCTAAGCCTAGGGCCTCAGGAGGCCAGCCAAAAAAGAAGAAGACAAGCAGTACCGGTCAGAATCCACAATCAGCGAGGCGTACGAAAGAAGCTACTCCGACGAGGAAGAGAAAGCCAGCCCCAGACCCAAAGAAGTGGGTTCCGCTGGTTAAAGCACTGAACAAAAGATCAAAACTGTATAACGTATGTGATGCATACAAATGGAAGCACCCTGTGTATGAGTGCTGCAAAAAGGAAGGGCCGGCCCACCTGAGGATGTTCACCTTCAAGGTCGTTATTGAGATAAAAAAGGAACCCTCAGAGCCAAACACAGAAGTGAAATGCTTTAGTGCACCGCAGCTGAATAAGAAAGCTGCAGCGGAACACGCCGCAGAAGGAGCGTTATGGTACTTGAAGAAGGTTGGTTATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DND1_DSRM

Protein Analysis

198

Amino Acids

22.03

Weight (kDa)

9.47

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DND1_DSRM PF14709 117 - 193 4.3e-16 double strand RNA binding domain from DEAD END PROTEIN 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 104, 326, 518, 542, 552
AdeI CACNNNGTG 1 cut(s) 397
AfaI GTAC 3 cut(s) 235, 265, 572
AfiI CCNNNNNNNGG 1 cut(s) 435
AflII CTTAAG 1 cut(s) 125
AgeI ACCGGT 1 cut(s) 236
AgsI TTSAA 3 cut(s) 41, 451, 577
AleI CACNNNNGTG 1 cut(s) 497
AluBI AGCT 5 cut(s) 26, 161, 275, 523, 536
AluI AGCT 5 cut(s) 26, 161, 275, 523, 536
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 1 cut(s) 135
Alw44I GTGCAC 1 cut(s) 513
AoxI GGCC 5 cut(s) 116, 195, 205, 422, 426
ApaLI GTGCAC 1 cut(s) 513
ApeKI GCWGC 7 cut(s) 63, 97, 161, 408, 520, 536, 539
AsiGI ACCGGT 1 cut(s) 236
AspA2I CCTAGG 1 cut(s) 191
AspS9I GGNCC 5 cut(s) 88, 116, 195, 422, 427
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 436
AvaII GGWCC 1 cut(s) 88
AvrII CCTAGG 1 cut(s) 191
AxyI CCTNAGG 2 cut(s) 199, 434
BaeGI GKGCMC 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 7 cut(s) 75, 109, 148, 395, 523, 532, 551
BccI CCATC 1 cut(s) 11
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 2 cut(s) 95, 537
BfrI CTTAAG 1 cut(s) 125
BisI GCNGC 8 cut(s) 64, 98, 162, 409, 521, 537, 540, 552
BlnI CCTAGG 1 cut(s) 191
BlsI GCNGC 8 cut(s) 65, 99, 163, 410, 522, 538, 541, 553
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 5 cut(s) 88, 116, 195, 422, 427
BmiI GGNNCC 5 cut(s) 90, 117, 144, 324, 477
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 230
BplI GAGNNNNNCTC 2 cut(s) 15, 47
Bpu10I CCTNAGC 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 113, 191
BsaWI WCCGGW 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 435
Bse118I RCCGGY 2 cut(s) 236, 424
Bse21I CCTNAGG 2 cut(s) 199, 434
Bse3DI GCAATG 1 cut(s) 73
BseCI ATCGAT 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 113, 191
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 435
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 3 cut(s) 213, 425, 495
BseSI GKGCMC 1 cut(s) 517
BseXI GCAGC 7 cut(s) 75, 109, 148, 395, 523, 532, 551
BshFI GGCC 5 cut(s) 118, 197, 207, 424, 428
BshTI ACCGGT 1 cut(s) 236
BshVI ATCGAT 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 517
BsiSI CCGG 3 cut(s) 113, 237, 425
BsiWI CGTACG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 435
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 5 cut(s) 118, 197, 207, 424, 428
Bsp1286I GDGCHC 1 cut(s) 517
Bsp143I GATC 1 cut(s) 350
BspACI CCGC 5 cut(s) 104, 326, 518, 542, 552
BspANI GGCC 5 cut(s) 118, 197, 207, 424, 428
BspCNI CTCAG 3 cut(s) 212, 426, 494
BspDI ATCGAT 1 cut(s) 56
BspLI GGNNCC 5 cut(s) 90, 117, 144, 324, 477
BspMAI CTGCAG 2 cut(s) 99, 541
BspQI GCTCTTC 1 cut(s) 16
BspTI CTTAAG 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 73
BsrFI RCCGGY 2 cut(s) 236, 424
BssAI RCCGGY 2 cut(s) 236, 424
BssECI CCNNGG 2 cut(s) 113, 191
BssMI GATC 1 cut(s) 350
BssT1I CCWWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 360
Bst6I CTCTTC 2 cut(s) 16, 284
BstAFI CTTAAG 1 cut(s) 125
BstC8I GCNNGC 4 cut(s) 102, 209, 300, 426
BstDEI CTNAG 4 cut(s) 186, 199, 434, 481
BstF5I GGATG 1 cut(s) 444
BstKTI GATC 1 cut(s) 353
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 350
BstMWI GCNNNNNNNGC 2 cut(s) 548, 560
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 2 cut(s) 95, 537
BstSLI GKGCMC 1 cut(s) 517
BstV1I GCAGC 7 cut(s) 75, 109, 148, 395, 523, 532, 551
BstV2I GAAGAC 1 cut(s) 230
BstXI CCANNNNNNTGG 1 cut(s) 318
Bsu15I ATCGAT 1 cut(s) 56
Bsu36I CCTNAGG 2 cut(s) 199, 434
BsuRI GGCC 5 cut(s) 118, 197, 207, 424, 428
BsuTUI ATCGAT 1 cut(s) 56
BtsCI GGATG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 338
Cac8I GCNNGC 4 cut(s) 102, 209, 300, 426
Cfr10I RCCGGY 2 cut(s) 236, 424
Cfr13I GGNCC 5 cut(s) 88, 116, 195, 422, 427
ClaI ATCGAT 1 cut(s) 56
Csp6I GTAC 3 cut(s) 234, 264, 571
CspAI ACCGGT 1 cut(s) 236
CviAII CATG 1 cut(s) 171
CviQI GTAC 3 cut(s) 234, 264, 571
DdeI CTNAG 4 cut(s) 186, 199, 434, 481
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
DraIII CACNNNGTG 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 16, 284
EarI CTCTTC 2 cut(s) 16, 284
EciI GGCGGA 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 88
Eco81I CCTNAGG 2 cut(s) 199, 434
EcoO109I RGGNCCY 3 cut(s) 88, 116, 195
EcoT14I CCWWGG 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 191
FaeI CATG 1 cut(s) 174
FaiI YATR 8 cut(s) 77, 172, 363, 370, 379, 402, 568, 591
FaqI GGGAC 1 cut(s) 74
FatI CATG 1 cut(s) 170
Fnu4HI GCNGC 8 cut(s) 64, 98, 162, 409, 521, 537, 540, 552
FokI GGATG 1 cut(s) 451
FseI GGCCGGCC 1 cut(s) 428
Fsp4HI GCNGC 8 cut(s) 64, 98, 162, 409, 521, 537, 540, 552
FspBI CTAG 1 cut(s) 192
GluI GCNGC 8 cut(s) 64, 98, 162, 409, 521, 537, 540, 552
HaeIII GGCC 5 cut(s) 118, 197, 207, 424, 428
HapII CCGG 3 cut(s) 113, 237, 425
Hin1II CATG 1 cut(s) 174
HinfI GANTC 5 cut(s) 4, 47, 53, 151, 244
HpaII CCGG 3 cut(s) 113, 237, 425
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 2 cut(s) 444, 515
Hpy188I TCNGA 5 cut(s) 52, 178, 243, 282, 484
Hpy188III TCNNGA 1 cut(s) 201
Hpy8I GTNNAC 2 cut(s) 444, 515
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 4 cut(s) 413, 457, 551, 574
HpyCH4III ACNGT 1 cut(s) 360
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 5 cut(s) 97, 377, 411, 515, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 548, 560
HpyF3I CTNAG 4 cut(s) 186, 199, 434, 481
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 1 cut(s) 174
KroI GCCGGC 1 cut(s) 424
KroNI GCCGGC 1 cut(s) 426
Kzo9I GATC 1 cut(s) 350
LguI GCTCTTC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 560
Lsp1109I GCAGC 7 cut(s) 75, 109, 148, 395, 523, 532, 551
LweI GCATC 1 cut(s) 364
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 366
MalI GATC 1 cut(s) 352
MboI GATC 1 cut(s) 350
MboII GAAGA 7 cut(s) 33, 53, 56, 232, 235, 301, 589
MhlI GDGCHC 1 cut(s) 517
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 9 cut(s) 41, 79, 102, 197, 208, 252, 279, 429, 490
Mph1103I ATGCAT 1 cut(s) 379
MroNI GCCGGC 1 cut(s) 424
MseI TTAA 3 cut(s) 126, 333, 595
MslI CAYNNNNRTG 2 cut(s) 382, 497
MspA1I CMGCKG 4 cut(s) 161, 328, 523, 542
MspCI CTTAAG 1 cut(s) 125
MspI CCGG 3 cut(s) 113, 237, 425
MspR9I CCNGG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 548, 560
NaeI GCCGGC 1 cut(s) 426
NciI CCSGG 1 cut(s) 114
NdeII GATC 1 cut(s) 350
NgoMIV GCCGGC 1 cut(s) 424
NlaIII CATG 1 cut(s) 174
NlaIV GGNNCC 5 cut(s) 90, 117, 144, 324, 477
NsiI ATGCAT 1 cut(s) 379
OliI CACNNNNGTG 1 cut(s) 497
PciSI GCTCTTC 1 cut(s) 16
PdiI GCCGGC 1 cut(s) 426
PfeI GAWTC 5 cut(s) 4, 47, 53, 151, 244
Pfl23II CGTACG 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 236
PkrI GCNGC 8 cut(s) 65, 99, 163, 410, 522, 538, 541, 553
PpuMI RGGWCCY 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 88
PspLI CGTACG 1 cut(s) 263
PspN4I GGNNCC 5 cut(s) 90, 117, 144, 324, 477
PspPI GGNCC 5 cut(s) 88, 116, 195, 422, 427
PspPPI RGGWCCY 1 cut(s) 88
PstI CTGCAG 2 cut(s) 99, 541
PvuII CAGCTG 2 cut(s) 161, 523
RigI GGCCGGCC 1 cut(s) 428
RsaI GTAC 3 cut(s) 235, 265, 572
RsaNI GTAC 3 cut(s) 234, 264, 571
RseI CAYNNNNRTG 2 cut(s) 382, 497
SapI GCTCTTC 1 cut(s) 16
SaqAI TTAA 3 cut(s) 126, 333, 595
SatI GCNGC 8 cut(s) 64, 98, 162, 409, 521, 537, 540, 552
Sau3AI GATC 1 cut(s) 350
Sau96I GGNCC 5 cut(s) 88, 116, 195, 422, 427
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 517
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 2 cut(s) 95, 537
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 2 cut(s) 382, 497
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
SsiI CCGC 5 cut(s) 104, 326, 518, 542, 552
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 1 cut(s) 191
TaaI ACNGT 1 cut(s) 360
TaiI ACGT 1 cut(s) 369
TaqI TCGA 1 cut(s) 56
TauI GCSGC 1 cut(s) 554
TfiI GAWTC 5 cut(s) 4, 47, 53, 151, 244
Tru1I TTAA 3 cut(s) 126, 333, 595
Tru9I TTAA 3 cut(s) 126, 333, 595
TscAI CASTG 1 cut(s) 345
TseI GCWGC 7 cut(s) 63, 97, 161, 408, 520, 536, 539
TspDTI ATGAA 2 cut(s) 17, 159
TspRI CASTG 1 cut(s) 345
Vha464I CTTAAG 1 cut(s) 125
VneI GTGCAC 1 cut(s) 513
VpaK11BI GGWCC 1 cut(s) 88
XmaJI CCTAGG 1 cut(s) 191
XspI CTAG 1 cut(s) 192
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.