Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003615

Physical Location & Seq

Genomic Coordinates Forward (+)

35612680 .. 35616216

Gene Structure 3537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCCTCCGCGGAAGCTCTATGTCGGCCGCCGGTATCACTTATCGGAATCAAAACGTTCTTGGTCCTTTCGGCACCAATCTGCACAAGCTCCATAGTCCCCTCATCGTCGTCACTCTCAACTTTTCGTGATGGTGGTGGTTATGACTGTTTTGCACCTACTTCTCACTTAGATCAGCCGGTCTCAGTCACAAAAGACATCAGAGGAGGACCCATAAAAAGCTCAAGTTCAGATGAACTCGTCATGCGGAAGCATTCCACTCAAGTTGAGCTAGACATGCCCATTTTGAGGCCTGCCCCAAATGTTGCAAATATGCCTCAGCCTGCCCCAAATGTTGCAAATCCAAATCCCTCTAAACGAACAGAGCTGTTAGAATCAAAGTTTATAGACCCTGCTGAGCCAAATAAAAGTTTGAAGGTTGAAGATGCTTCTTTTGGTTCCATAAGGGTTTCATCAAACGATAAAATTGAGGCTAATGGAGAGTTGCTTCGTGGACTGTGTTGGGATGTGGGGAATAAGAATGAAGTGGTTACCCCAATTAACAATCTAGTAGGCACCCAAAAAAAGAAACCAGCAAAATCACATCTGCTTGAGATTTGCACTAAACAAAAATGGGAGCCTCCTGTGTTTGAGTGCTGCAAGGAGGAAGGGCCAAGCCACAGGAAAATGTTCACCTTCAAGGTTAATGTTAAAGTGAATGATCCCAATACAGATCTTAAATGCTTTAGTTCTCCTCATCCAAAAAAGAAAGCTGCAGCCGAGCAAGCATCTGAAGGGGCACTGTGGTACTTAAAGCATCTTGGTTATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM

Protein Analysis

270

Amino Acids

29.46

Weight (kDa)

8.7

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DND1_DSRM	PF14709	192 - 265	1.6e-15	double strand RNA binding domain from DEAD END PROTEIN 1
dsrm	PF00035	192 - 261	3.3e-08	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80650 AT1G80650 AT1G80650 AT1G80650 AT4G00420 AT4G00420 AT4G00420 AT4G00420 AT4G00420
fragaria_vesca	FvH4_2g22602
malus_domestica	MD17G1220100.v1.1
prunus_persica	Prupe.3G095800_v2.0.a1 Prupe.3G095800_v2.0.a1
pyrus_communis	pycom17g22500
rosa_laevigata	RLG00000012284 RLG00000019337
rosa_multiflora	Rmu_co8221574.1_g000001 Rmu_sc0007236.1_g000004
rosa_roxburghii	Rroxscaffold_2G00111090 Rroxscaffold_7G00177730 Rroxscaffold_7G00177760
rosa_rugosa	Rorug02G0312000 Rorug06G0205600 Rorug06G0205600
rosa_samantha	Rh2AG364600 Rh2BG370300 Rh2CG276500 Rh2CG347900 Rh6AG317100 Rh6BG323700 Rh6BG324100 Rh6CG330300 Rh6DG315500
rosa_wichuraiana	Rw2G029720 Rw6G027350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	73, 554
AccII	CGCG	1 cut(s)	11
AciI	CCGC	4 cut(s)	9, 11, 29, 247
AclI	AACGTT	1 cut(s)	56
AclWI	GGATC	1 cut(s)	695
AcoI	YGGCCR	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	792
AfaI	GTAC	1 cut(s)	788
AfiI	CCNNNNNNNGG	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	415, 422, 679
AluBI	AGCT	6 cut(s)	17, 90, 222, 271, 367, 752
AluI	AGCT	6 cut(s)	17, 90, 222, 271, 367, 752
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	695
AoxI	GGCC	4 cut(s)	3, 26, 290, 650
ApeKI	GCWGC	3 cut(s)	636, 752, 755
Asp700I	GAANNNNTTC	1 cut(s)	668
AspS9I	GGNCC	3 cut(s)	64, 209, 650
AsuHPI	GGTGA	1 cut(s)	664
AvaII	GGWCC	2 cut(s)	64, 209
BaeGI	GKGCMC	1 cut(s)	781
BanI	GGYRCC	2 cut(s)	73, 554
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	3 cut(s)	623, 739, 767
BccI	CCATC	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	2 cut(s)	272, 548
BfmI	CTRYAG	1 cut(s)	753
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	4 cut(s)	29, 637, 753, 756
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	4 cut(s)	30, 638, 754, 757
Bme18I	GGWCC	2 cut(s)	64, 209
BmgT120I	GGNCC	3 cut(s)	64, 209, 650
BmiI	GGNNCC	5 cut(s)	75, 211, 439, 556, 618
BmsI	GCATC	3 cut(s)	415, 776, 805
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu1102I	GCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	3 cut(s)	208, 246, 611
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse118I	RCCGGY	2 cut(s)	31, 178
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	2 cut(s)	511, 736
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMII	CTCAG	3 cut(s)	198, 332, 387
BseRI	GAGGAG	2 cut(s)	219, 723
BseSI	GKGCMC	1 cut(s)	781
BseX3I	CGGCCG	1 cut(s)	26
BseXI	GCAGC	3 cut(s)	623, 739, 767
BsgI	GTGCAG	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	4 cut(s)	5, 28, 292, 652
BshNI	GGYRCC	2 cut(s)	73, 554
BsiEI	CGRYCG	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	32, 179
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	4 cut(s)	5, 28, 292, 652
Bso31I	GGTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	781
Bsp143I	GATC	3 cut(s)	172, 700, 712
Bsp1720I	GCTNAGC	1 cut(s)	396
BspACI	CCGC	4 cut(s)	9, 11, 29, 247
BspANI	GGCC	4 cut(s)	5, 28, 292, 652
BspCNI	CTCAG	3 cut(s)	197, 331, 388
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	5 cut(s)	75, 211, 439, 556, 618
BspMAI	CTGCAG	1 cut(s)	757
BspPI	GGATC	1 cut(s)	695
BspT107I	GGYRCC	2 cut(s)	73, 554
BspTNI	GGTCTC	1 cut(s)	187
BsrFI	RCCGGY	2 cut(s)	31, 178
BssAI	RCCGGY	2 cut(s)	31, 178
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	3 cut(s)	172, 700, 712
Bst4CI	ACNGT	3 cut(s)	149, 498, 783
BstC8I	GCNNGC	3 cut(s)	294, 324, 765
BstDEI	CTNAG	4 cut(s)	169, 184, 318, 396
BstDSI	CCRYGG	1 cut(s)	9
BstEII	GGTNACC	1 cut(s)	529
BstF5I	GGATG	2 cut(s)	511, 736
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	3 cut(s)	175, 703, 715
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	3 cut(s)	172, 700, 712
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 764
BstNSI	RCATGY	1 cut(s)	280
BstPI	GGTNACC	1 cut(s)	529
BstSFI	CTRYAG	1 cut(s)	753
BstSLI	GKGCMC	1 cut(s)	781
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	623, 739, 767
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
BstZI	CGGCCG	1 cut(s)	26
BsuRI	GGCC	4 cut(s)	5, 28, 292, 652
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	511, 736
BtsIMutI	CAGTG	1 cut(s)	779
Cac8I	GCNNGC	3 cut(s)	294, 324, 765
Cfr10I	RCCGGY	2 cut(s)	31, 178
Cfr13I	GGNCC	3 cut(s)	64, 209, 650
Cfr42I	CCGCGG	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	787
CspCI	CAANNNNNGTGG	2 cut(s)	247, 282
CviAII	CATG	2 cut(s)	244, 277
CviQI	GTAC	1 cut(s)	787
DdeI	CTNAG	4 cut(s)	169, 184, 318, 396
DpnI	GATC	3 cut(s)	174, 702, 714
DpnII	GATC	3 cut(s)	172, 700, 712
EaeI	YGGCCR	1 cut(s)	26
EagI	CGGCCG	1 cut(s)	26
EclXI	CGGCCG	1 cut(s)	26
Eco147I	AGGCCT	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	64, 209
Eco52I	CGGCCG	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	792
Eco91I	GGTNACC	1 cut(s)	529
EcoO109I	RGGNCCY	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	529
FaeI	CATG	2 cut(s)	247, 280
FaiI	YATR	9 cut(s)	22, 95, 144, 215, 245, 278, 314, 386, 443
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	243, 276
Fnu4HI	GCNGC	4 cut(s)	29, 637, 753, 756
FokI	GGATG	2 cut(s)	518, 723
Fsp4HI	GCNGC	4 cut(s)	29, 637, 753, 756
FspBI	CTAG	2 cut(s)	272, 548
GluI	GCNGC	4 cut(s)	29, 637, 753, 756
HaeIII	GGCC	4 cut(s)	5, 28, 292, 652
HapII	CCGG	2 cut(s)	32, 179
Hin1II	CATG	2 cut(s)	247, 280
HinfI	GANTC	2 cut(s)	48, 374
HpaII	CCGG	2 cut(s)	32, 179
HphI	GGTGA	1 cut(s)	664
Hpy166II	GTNNAC	2 cut(s)	494, 672
Hpy188I	TCNGA	4 cut(s)	47, 203, 232, 772
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	2 cut(s)	494, 672
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	4 cut(s)	409, 641, 685, 767
HpyCH4III	ACNGT	3 cut(s)	149, 498, 783
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	7 cut(s)	84, 155, 308, 338, 600, 639, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 764
HpyF3I	CTNAG	4 cut(s)	169, 184, 318, 396
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	247, 280
KspI	CCGCGG	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	172, 700, 712
LmnI	GCTCC	2 cut(s)	95, 616
LpnPI	CCDG	8 cut(s)	45, 192, 306, 336, 405, 585, 636, 646
Lsp1109I	GCAGC	3 cut(s)	623, 739, 767
LweI	GCATC	3 cut(s)	415, 776, 805
MaeI	CTAG	2 cut(s)	272, 548
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	3 cut(s)	111, 187, 529
MalI	GATC	3 cut(s)	174, 702, 714
MboI	GATC	3 cut(s)	172, 700, 712
MboII	GAAGA	1 cut(s)	434
MflI	RGATCY	1 cut(s)	712
MhlI	GDGCHC	1 cut(s)	781
MluCI	AATT	2 cut(s)	465, 537
MroXI	GAANNNNTTC	1 cut(s)	668
MseI	TTAA	5 cut(s)	540, 684, 690, 717, 791
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	2 cut(s)	32, 179
Mva1269I	GAATGC	1 cut(s)	253
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	277, 764
NdeII	GATC	3 cut(s)	172, 700, 712
NlaIII	CATG	2 cut(s)	247, 280
NlaIV	GGNNCC	5 cut(s)	75, 211, 439, 556, 618
NmeAIII	GCCGAG	1 cut(s)	784
NmuCI	GTSAC	2 cut(s)	111, 187
NspI	RCATGY	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	292
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	668
PfeI	GAWTC	2 cut(s)	48, 374
PkrI	GCNGC	4 cut(s)	30, 638, 754, 757
PpuMI	RGGWCCY	1 cut(s)	209
Psp1406I	AACGTT	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	209
PspEI	GGTNACC	1 cut(s)	529
PspN4I	GGNNCC	5 cut(s)	75, 211, 439, 556, 618
PspPI	GGNCC	3 cut(s)	64, 209, 650
PspPPI	RGGWCCY	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	757
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	1 cut(s)	788
RsaNI	GTAC	1 cut(s)	787
SacII	CCGCGG	1 cut(s)	12
SaqAI	TTAA	5 cut(s)	540, 684, 690, 717, 791
SatI	GCNGC	4 cut(s)	29, 637, 753, 756
Sau3AI	GATC	3 cut(s)	172, 700, 712
Sau96I	GGNCC	3 cut(s)	64, 209, 650
SduI	GDGCHC	1 cut(s)	781
SfaNI	GCATC	3 cut(s)	415, 776, 805
SfcI	CTRYAG	1 cut(s)	753
Sfr303I	CCGCGG	1 cut(s)	12
SgrBI	CCGCGG	1 cut(s)	12
SinI	GGWCC	2 cut(s)	64, 209
SmlI	CTYRAG	3 cut(s)	223, 261, 590
SmoI	CTYRAG	3 cut(s)	223, 261, 590
Sse9I	AATT	2 cut(s)	465, 537
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	4 cut(s)	9, 11, 29, 247
SspMI	CTAG	2 cut(s)	272, 548
StuI	AGGCCT	1 cut(s)	292
TaaI	ACNGT	3 cut(s)	149, 498, 783
TaiI	ACGT	1 cut(s)	59
TasI	AATT	2 cut(s)	465, 537
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	2 cut(s)	48, 374
Tru1I	TTAA	5 cut(s)	540, 684, 690, 717, 791
Tru9I	TTAA	5 cut(s)	540, 684, 690, 717, 791
TscAI	CASTG	1 cut(s)	786
TseFI	GTSAC	2 cut(s)	111, 187
TseI	GCWGC	3 cut(s)	636, 752, 755
Tsp45I	GTSAC	2 cut(s)	111, 187
TspDTI	ATGAA	3 cut(s)	249, 441, 537
TspRI	CASTG	1 cut(s)	786
VpaK11BI	GGWCC	2 cut(s)	64, 209
XceI	RCATGY	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	668
XspI	CTAG	2 cut(s)	272, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.