double strand RNA binding domain from DEAD END PROTEIN 1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G80650 AT1G80650 AT1G80650 AT1G80650 AT4G00420 AT4G00420 AT4G00420 AT4G00420 AT4G00420 |
| fragaria_vesca | FvH4_2g22602 |
| malus_domestica | MD17G1220100.v1.1 |
| prunus_persica | Prupe.3G095800_v2.0.a1 Prupe.3G095800_v2.0.a1 |
| pyrus_communis | pycom17g22500 |
| rosa_laevigata | RLG00000012284 RLG00000019337 |
| rosa_multiflora | Rmu_co8221574.1_g000001 Rmu_sc0007236.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00111090 Rroxscaffold_7G00177730 Rroxscaffold_7G00177760 |
| rosa_rugosa | Rorug02G0312000 Rorug06G0205600 Rorug06G0205600 |
| rosa_samantha | Rh2AG364600 Rh2BG370300 Rh2CG276500 Rh2CG347900 Rh6AG317100 Rh6BG323700 Rh6BG324100 Rh6CG330300 Rh6DG315500 |
| rosa_wichuraiana | Rw2G029720 Rw6G027350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 12 |
| AcuI | CTGAAG | 2 cut(s) | 231, 249 |
| AfaI | GTAC | 1 cut(s) | 419 |
| AflII | CTTAAG | 1 cut(s) | 470 |
| AgsI | TTSAA | 2 cut(s) | 365, 494 |
| AluBI | AGCT | 3 cut(s) | 109, 437, 506 |
| AluI | AGCT | 3 cut(s) | 109, 437, 506 |
| AlwI | GGATC | 1 cut(s) | 12 |
| AoxI | GGCC | 1 cut(s) | 203 |
| ApeKI | GCWGC | 3 cut(s) | 434, 446, 455 |
| AspS9I | GGNCC | 1 cut(s) | 323 |
| AsuHPI | GGTGA | 1 cut(s) | 569 |
| AvaII | GGWCC | 1 cut(s) | 323 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 449, 482 |
| BanII | GRGCYC | 1 cut(s) | 222 |
| BbsI | GAAGAC | 2 cut(s) | 15, 135 |
| BbvI | GCAGC | 3 cut(s) | 446, 458, 467 |
| BccI | CCATC | 2 cut(s) | 139, 541 |
| BfmI | CTRYAG | 1 cut(s) | 74 |
| BfrI | CTTAAG | 1 cut(s) | 470 |
| BglII | AGATCT | 1 cut(s) | 242 |
| BisI | GCNGC | 3 cut(s) | 435, 447, 456 |
| BlpI | GCTNAGC | 1 cut(s) | 438 |
| BlsI | GCNGC | 3 cut(s) | 436, 448, 457 |
| Bme18I | GGWCC | 1 cut(s) | 323 |
| BmgT120I | GGNCC | 1 cut(s) | 323 |
| BmiI | GGNNCC | 2 cut(s) | 150, 324 |
| BmsI | GCATC | 1 cut(s) | 71 |
| BpiI | GAAGAC | 2 cut(s) | 15, 135 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 438 |
| BpuEI | CTTGAG | 1 cut(s) | 185 |
| BsaJI | CCNNGG | 1 cut(s) | 318 |
| BseDI | CCNNGG | 1 cut(s) | 318 |
| BseGI | GGATG | 1 cut(s) | 72 |
| BseMII | CTCAG | 3 cut(s) | 207, 251, 429 |
| BseXI | GCAGC | 3 cut(s) | 446, 458, 467 |
| BshFI | GGCC | 1 cut(s) | 205 |
| BsnI | GGCC | 1 cut(s) | 205 |
| Bsp1286I | GDGCHC | 1 cut(s) | 222 |
| Bsp143I | GATC | 2 cut(s) | 4, 242 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 438 |
| BspANI | GGCC | 1 cut(s) | 205 |
| BspCNI | CTCAG | 3 cut(s) | 208, 250, 430 |
| BspLI | GGNNCC | 2 cut(s) | 150, 324 |
| BspPI | GGATC | 1 cut(s) | 12 |
| BspTI | CTTAAG | 1 cut(s) | 470 |
| BssECI | CCNNGG | 1 cut(s) | 318 |
| BssMI | GATC | 2 cut(s) | 4, 242 |
| Bst4CI | ACNGT | 6 cut(s) | 121, 261, 303, 361, 391, 417 |
| BstAFI | CTTAAG | 1 cut(s) | 470 |
| BstC8I | GCNNGC | 1 cut(s) | 444 |
| BstDEI | CTNAG | 3 cut(s) | 216, 237, 438 |
| BstF5I | GGATG | 1 cut(s) | 72 |
| BstKTI | GATC | 2 cut(s) | 7, 245 |
| BstMBI | GATC | 2 cut(s) | 4, 242 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 148, 443, 452, 455 |
| BstSFI | CTRYAG | 1 cut(s) | 74 |
| BstV1I | GCAGC | 3 cut(s) | 446, 458, 467 |
| BstV2I | GAAGAC | 2 cut(s) | 15, 135 |
| BstX2I | RGATCY | 2 cut(s) | 4, 242 |
| BstYI | RGATCY | 2 cut(s) | 4, 242 |
| BsuRI | GGCC | 1 cut(s) | 205 |
| BtsCI | GGATG | 1 cut(s) | 72 |
| BtsIMutI | CAGTG | 1 cut(s) | 299 |
| Cac8I | GCNNGC | 1 cut(s) | 444 |
| Cfr13I | GGNCC | 1 cut(s) | 323 |
| Csp6I | GTAC | 1 cut(s) | 418 |
| CviJI | RGCY | 8 cut(s) | 56, 109, 151, 205, 220, 251, 437, 506 |
| CviKI_1 | RGCY | 8 cut(s) | 56, 109, 151, 205, 220, 251, 437, 506 |
| CviQI | GTAC | 1 cut(s) | 418 |
| DdeI | CTNAG | 3 cut(s) | 216, 237, 438 |
| DpnI | GATC | 2 cut(s) | 6, 244 |
| DpnII | GATC | 2 cut(s) | 4, 242 |
| Eco147I | AGGCCT | 1 cut(s) | 205 |
| Eco24I | GRGCYC | 1 cut(s) | 222 |
| Eco32I | GATATC | 1 cut(s) | 537 |
| Eco47I | GGWCC | 1 cut(s) | 323 |
| Eco57I | CTGAAG | 2 cut(s) | 231, 249 |
| EcoO109I | RGGNCCY | 1 cut(s) | 323 |
| EcoRV | GATATC | 1 cut(s) | 537 |
| EcoT38I | GRGCYC | 1 cut(s) | 222 |
| FaiI | YATR | 8 cut(s) | 38, 267, 274, 306, 312, 333, 335, 486 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 444, 476 |
| FauNDI | CATATG | 1 cut(s) | 333 |
| Fnu4HI | GCNGC | 3 cut(s) | 435, 447, 456 |
| FokI | GGATG | 1 cut(s) | 79 |
| FriOI | GRGCYC | 1 cut(s) | 222 |
| Fsp4HI | GCNGC | 3 cut(s) | 435, 447, 456 |
| GluI | GCNGC | 3 cut(s) | 435, 447, 456 |
| HaeIII | GGCC | 1 cut(s) | 205 |
| HindIII | AAGCTT | 1 cut(s) | 504 |
| HinfI | GANTC | 3 cut(s) | 20, 377, 409 |
| HphI | GGTGA | 1 cut(s) | 569 |
| Hpy166II | GTNNAC | 2 cut(s) | 530, 560 |
| Hpy188I | TCNGA | 3 cut(s) | 184, 240, 384 |
| Hpy188III | TCNNGA | 1 cut(s) | 17 |
| Hpy8I | GTNNAC | 2 cut(s) | 530, 560 |
| HpyAV | CCTTC | 3 cut(s) | 55, 364, 500 |
| HpyCH4III | ACNGT | 6 cut(s) | 121, 261, 303, 361, 391, 417 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 148, 443, 452, 455 |
| HpyF3I | CTNAG | 3 cut(s) | 216, 237, 438 |
| Kzo9I | GATC | 2 cut(s) | 4, 242 |
| LmnI | GCTCC | 1 cut(s) | 148 |
| LpnPI | CCDG | 6 cut(s) | 30, 201, 333, 428, 495, 540 |
| Lsp1109I | GCAGC | 3 cut(s) | 446, 458, 467 |
| LweI | GCATC | 1 cut(s) | 71 |
| MaeIII | GTNAC | 3 cut(s) | 136, 355, 550 |
| MalI | GATC | 2 cut(s) | 6, 244 |
| MboI | GATC | 2 cut(s) | 4, 242 |
| MboII | GAAGA | 8 cut(s) | 15, 33, 137, 140, 237, 242, 436, 553 |
| MflI | RGATCY | 2 cut(s) | 4, 242 |
| MhlI | GDGCHC | 1 cut(s) | 222 |
| MluCI | AATT | 1 cut(s) | 268 |
| MlyI | GAGTC | 1 cut(s) | 29 |
| MnlI | CCTC | 8 cut(s) | 21, 24, 57, 195, 216, 276, 313, 367 |
| MseI | TTAA | 2 cut(s) | 96, 471 |
| MslI | CAYNNNNRTG | 1 cut(s) | 143 |
| MspA1I | CMGCKG | 1 cut(s) | 437 |
| MspCI | CTTAAG | 1 cut(s) | 470 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 148, 443, 452, 455 |
| NdeI | CATATG | 1 cut(s) | 333 |
| NdeII | GATC | 2 cut(s) | 4, 242 |
| NlaIV | GGNNCC | 2 cut(s) | 150, 324 |
| NmeAIII | GCCGAG | 1 cut(s) | 343 |
| NmuCI | GTSAC | 1 cut(s) | 136 |
| PceI | AGGCCT | 1 cut(s) | 205 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 120 |
| PfeI | GAWTC | 2 cut(s) | 377, 409 |
| PflFI | GACNNNGTC | 1 cut(s) | 134 |
| PkrI | GCNGC | 3 cut(s) | 436, 448, 457 |
| PleI | GAGTC | 1 cut(s) | 28 |
| PpsI | GAGTC | 1 cut(s) | 28 |
| PpuMI | RGGWCCY | 1 cut(s) | 323 |
| Psp5II | RGGWCCY | 1 cut(s) | 323 |
| PspN4I | GGNNCC | 2 cut(s) | 150, 324 |
| PspPI | GGNCC | 1 cut(s) | 323 |
| PspPPI | RGGWCCY | 1 cut(s) | 323 |
| PsuI | RGATCY | 2 cut(s) | 4, 242 |
| PsyI | GACNNNGTC | 1 cut(s) | 134 |
| PvuII | CAGCTG | 1 cut(s) | 437 |
| RsaI | GTAC | 1 cut(s) | 419 |
| RsaNI | GTAC | 1 cut(s) | 418 |
| RseI | CAYNNNNRTG | 1 cut(s) | 143 |
| SaqAI | TTAA | 2 cut(s) | 96, 471 |
| SatI | GCNGC | 3 cut(s) | 435, 447, 456 |
| Sau3AI | GATC | 2 cut(s) | 4, 242 |
| Sau96I | GGNCC | 1 cut(s) | 323 |
| SchI | GAGTC | 1 cut(s) | 29 |
| SduI | GDGCHC | 1 cut(s) | 222 |
| SetI | ASST | 4 cut(s) | 111, 439, 508, 559 |
| SfaNI | GCATC | 1 cut(s) | 71 |
| SfcI | CTRYAG | 1 cut(s) | 74 |
| SinI | GGWCC | 1 cut(s) | 323 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 143 |
| SmlI | CTYRAG | 2 cut(s) | 164, 470 |
| SmoI | CTYRAG | 2 cut(s) | 164, 470 |
| Sse9I | AATT | 1 cut(s) | 268 |
| SseBI | AGGCCT | 1 cut(s) | 205 |
| SspI | AATATT | 1 cut(s) | 342 |
| StuI | AGGCCT | 1 cut(s) | 205 |
| TaaI | ACNGT | 6 cut(s) | 121, 261, 303, 361, 391, 417 |
| TaqI | TCGA | 2 cut(s) | 123, 539 |
| TasI | AATT | 1 cut(s) | 268 |
| TatI | WGTACW | 1 cut(s) | 417 |
| TfiI | GAWTC | 2 cut(s) | 377, 409 |
| Tru1I | TTAA | 2 cut(s) | 96, 471 |
| Tru9I | TTAA | 2 cut(s) | 96, 471 |
| TscAI | CASTG | 1 cut(s) | 306 |
| TseFI | GTSAC | 1 cut(s) | 136 |
| TseI | GCWGC | 3 cut(s) | 434, 446, 455 |
| Tsp45I | GTSAC | 1 cut(s) | 136 |
| TspDTI | ATGAA | 3 cut(s) | 15, 350, 383 |
| TspGWI | ACGGA | 1 cut(s) | 538 |
| TspRI | CASTG | 1 cut(s) | 306 |
| Tth111I | GACNNNGTC | 1 cut(s) | 134 |
| Vha464I | CTTAAG | 1 cut(s) | 470 |
| VpaK11BI | GGWCC | 1 cut(s) | 323 |